Chapter 1: Atoms, Molecules and Ions
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Brief Guide to the Nomenclature of Organic Chemistry
1 Brief Guide to the Nomenclature of Table 1: Components of the substitutive name Organic Chemistry (4S,5E)-4,6-dichlorohept-5-en-2-one for K.-H. Hellwich (Germany), R. M. Hartshorn (New Zealand), CH3 Cl O A. Yerin (Russia), T. Damhus (Denmark), A. T. Hutton (South 4 2 Africa). E-mail: [email protected] Sponsoring body: Cl 6 CH 5 3 IUPAC Division of Chemical Nomenclature and Structure suffix for principal hept(a) parent (heptane) one Representation. characteristic group en(e) unsaturation ending chloro substituent prefix 1 INTRODUCTION di multiplicative prefix S E stereodescriptors CHEMISTRY The universal adoption of an agreed nomenclature is a key tool for 2 4 5 6 locants ( ) enclosing marks efficient communication in the chemical sciences, in industry and Multiplicative prefixes (Table 2) are used when more than one for regulations associated with import/export or health and safety. fragment of a particular kind is present in a structure. Which kind of REPRESENTATION The International Union of Pure and Applied Chemistry (IUPAC) multiplicative prefix is used depends on the complexity of the provides recommendations on many aspects of nomenclature.1 The APPLIED corresponding fragment – e.g. trichloro, but tris(chloromethyl). basics of organic nomenclature are summarized here, and there are companion documents on the nomenclature of inorganic2 and Table 2: Multiplicative prefixes for simple/complicated entities polymer3 chemistry, with hyperlinks to original documents. An No. Simple Complicated No. Simple Complicated AND overall -
4.2 Ionic Bonds Vocabulary: Ion – Polyatomic Ion – Ionic Bond – Ionic Compound – Chemical Formula – Subscript –
4.2 Ionic Bonds Vocabulary: Ion – Polyatomic ion – Ionic bond – Ionic compound – Chemical formula – Subscript – Crystal - An ion is an atom or group of atoms that has an electric charge. When a neutral atom loses a valence electron, it loses a negative charge. It becomes a positive ion. When a neutral atom gains an electron, it gains a negative charge and becomes a negative ion. Common Ions: Name Charge Symbol/Formula Lithium 1+ Li+ Sodium 1+ Na+ Potassium 1+ K+ Ammonium 1+ NH₄+ Calcium 2+ Ca²+ Magnesium 2+ Mg²+ Aluminum 3+ Al³+ Fluoride 1- F- Chloride 1- Cl- Iodide 1- I- Bicarbonate 1- HCO₃- Nitrate 1- NO₃- Oxide 2- O²- Sulfide 2- S²- Carbonate 2- CO₃²- Sulfate 2- SO₄²- Notice that some ions are made of several atoms. Ammonium is made of 1 nitrogen atom and 4 hydrogen atoms. Ions that are made of more than 1 atom are called polyatomic ions. Ionic bonds: When atoms that easily lose electrons react with atoms that easily gain electrons, valence electrons are transferred from one type to another. The transfer gives each type of atom a more stable arrangement of electrons. 1. Sodium has 1 valence electron. Chlorine has 7 valence electrons. 2. The valence electron of sodium is transferred to the chlorine atom. Both atoms become ions. Sodium atom becomes a positive ion (Na+) and chlorine becomes a negative ion (Cl-). 3. Oppositely charged particles attract, so the ions attract. An ionic bond is the attraction between 2 oppositely charged ions. The resulting compound is called an ionic compound. In an ionic compound, the total overall charge is zero because the total positive charges are equal to the total negative charges. -
Ionic Compound Ratios Time: 1 -2 Class Periods
Collisions Lesson Plan Ionic Compound Ratios Time: 1 -2 class periods Lesson Description In this lesson, students will use Collisions to explore the formation of ionic compounds and compound ratios. Key Essential Questions 1. What makes up an ionic compound? 2. Are ionic compounds found in common ratios? Learning Outcomes Students will be able to determine the ionic compound ratio of an ionic compound. Prior Student Knowledge Expected Cations are postiviely charged ions and anions are negatively charged ions. Lesson Materials • Individual student access to Collisions on tablet, Chromebook, or computer. • Projector / display of teacher screen • Accompanying student resources (attached) Standards Alignment NGSS Alignment Science & Enginnering Practices Disciplinary Core Ideas Crosscutting Concepts • Developing and using • HS-PS-12. Construct and • Structure and Function models revise an explanation for the • Construcing explanations outcome of a simple chemical and designing solutions rection based on the outermost electron states of atoms, trends int he periodic table, and knowl- edge of the partterns of chemi- cal properties. www.playmadagames.com ©2018 PlayMada Games LLC. All rights reserved. 1 PART 1: Explore (15 minutes) Summary This is an inquiry-driven activity where students will complete the first few levels of the Collisions Ionic Bonding game to become introduced to the concept of ionic bonding and compound ratios. Activity 1. Direct students to log into Collisions with their individual username and password. 2. Students should enter the Ionic Bonding game and play Levels 1-6 levels. 3. Have your students answer the following questions during gameplay: 1. What combination of ions did you use to successfully match a target? 2. -
Of the Periodic Table
of the Periodic Table teacher notes Give your students a visual introduction to the families of the periodic table! This product includes eight mini- posters, one for each of the element families on the main group of the periodic table: Alkali Metals, Alkaline Earth Metals, Boron/Aluminum Group (Icosagens), Carbon Group (Crystallogens), Nitrogen Group (Pnictogens), Oxygen Group (Chalcogens), Halogens, and Noble Gases. The mini-posters give overview information about the family as well as a visual of where on the periodic table the family is located and a diagram of an atom of that family highlighting the number of valence electrons. Also included is the student packet, which is broken into the eight families and asks for specific information that students will find on the mini-posters. The students are also directed to color each family with a specific color on the blank graphic organizer at the end of their packet and they go to the fantastic interactive table at www.periodictable.com to learn even more about the elements in each family. Furthermore, there is a section for students to conduct their own research on the element of hydrogen, which does not belong to a family. When I use this activity, I print two of each mini-poster in color (pages 8 through 15 of this file), laminate them, and lay them on a big table. I have students work in partners to read about each family, one at a time, and complete that section of the student packet (pages 16 through 21 of this file). When they finish, they bring the mini-poster back to the table for another group to use. -
Introduction to NMR Spectroscopy of Proteins
A brief introduction to NMR spectroscopy of proteins By Flemming M. Poulsen 2002 1 Introduction Nuclear magnetic resonance, NMR, and X-ray crystallography are the only two methods that can be applied to the study of three-dimensional molecular structures of proteins at atomic resolution. NMR spectroscopy is the only method that allows the determination of three-dimensional structures of proteins molecules in the solution phase. In addition NMR spectroscopy is a very useful method for the study of kinetic reactions and properties of proteins at the atomic level. In contrast to most other methods NMR spectroscopy studies chemical properties by studying individual nuclei. This is the power of the methods but sometimes also the weakness. NMR spectroscopy can be applied to structure determination by routine NMR techniques for proteins in the size range between 5 and 25 kDa. For many proteins in this size range structure determination is relatively easy, however there are many examples of structure determinations of proteins, which have failed due to problems of aggregation and dynamics and reduced solubility. It is the purpose of these notes to introduce the reader to descriptions and applications of the methods of NMR spectroscopy most commonly applied in scientific studies of biological macromolecules, in particular proteins. The figures 1,2 and 11 are copied from “Multidímensional NMR in Liquids” by F.J.M de Ven (1995)Wiley-VCH The Figure13 and Table 1 have been copied from “NMR of Proteins and Nucleic acis” K. Wüthrich (1986) Wiley Interscience The Figures 20, 21 and 22 have been copied from J. -
Introduction to Chemistry
Introduction to Chemistry Author: Tracy Poulsen Digital Proofer Supported by CK-12 Foundation CK-12 Foundation is a non-profit organization with a mission to reduce the cost of textbook Introduction to Chem... materials for the K-12 market both in the U.S. and worldwide. Using an open-content, web-based Authored by Tracy Poulsen collaborative model termed the “FlexBook,” CK-12 intends to pioneer the generation and 8.5" x 11.0" (21.59 x 27.94 cm) distribution of high-quality educational content that will serve both as core text as well as provide Black & White on White paper an adaptive environment for learning. 250 pages ISBN-13: 9781478298601 Copyright © 2010, CK-12 Foundation, www.ck12.org ISBN-10: 147829860X Except as otherwise noted, all CK-12 Content (including CK-12 Curriculum Material) is made Please carefully review your Digital Proof download for formatting, available to Users in accordance with the Creative Commons Attribution/Non-Commercial/Share grammar, and design issues that may need to be corrected. Alike 3.0 Unported (CC-by-NC-SA) License (http://creativecommons.org/licenses/by-nc- sa/3.0/), as amended and updated by Creative Commons from time to time (the “CC License”), We recommend that you review your book three times, with each time focusing on a different aspect. which is incorporated herein by this reference. Specific details can be found at http://about.ck12.org/terms. Check the format, including headers, footers, page 1 numbers, spacing, table of contents, and index. 2 Review any images or graphics and captions if applicable. -
Ionic Compounds Are Formed When Cations Combine with Anions Through an Electrostatic Interaction
CHM1390 September 7, 2007 Dr. Peebles Notes on Ionic Compounds Basics: Ionic compounds are formed when cations combine with anions through an electrostatic interaction. Cation – a positively charged ion, formed by loss of one or more electrons from a neutral atom or group of atoms. Anion – a negatively charged ion, formed by addition of one or more electrons to a neutral atoms or group of atoms. Instead of forming individual molecules, ionic compounds form a crystal lattice in which the ions are arranged in a regular three dimensional array. See Figure 3.1 on p. 85 of Tro for an example. The smallest unit of an ionic compound is referred to as a formula unit. It contains the smallest number of ions of each type needed to represent the composition of the crystal. For example, one formula unit of NaCl consists of one Na+ ion and one Cl– ion. Properties: Ionic compounds typically have very high melting points. The higher the charge on the ions, the higher the melting point will be. The ions in the lattice can be arranged in many different ways (called crystal packing or unit cells), and this gives different crystals different distinctive shapes. Ionic compounds are strong electrolytes. Electrolyte – a compound that breaks into or reacts to form ions when it is dissolved in water. Strong electrolyte – an electrolyte in which 100% of the compound that dissolves breaks into ions. All ionic compounds are strong electrolytes. For example, if NaCl is dissolved in water, there will be no NaCl leftover; the water will only contain dissolved Na+ and Cl– ions. -
Electron Paramagnetic Resonance of Radicals and Metal Complexes. 2. International Conference of the Polish EPR Association. Wars
! U t S - PL — voZ, PL9700944 Warsaw, 9-13 September 1996 ELECTRON PARAMAGNETIC RESONANCE OF RADICALS AND METAL COMPLEXES 2nd International Conference of the Polish EPR Association INSTITUTE OF NUCLEAR CHEMISTRY AND TECHNOLOGY UNIVERSITY OF WARSAW VGL 2 8 Hi 1 2 ORGANIZING COMMITTEE Institute of Nuclear Chemistry and Technology Prof. Andrzej G. Chmielewski, Ph.D., D.Sc. Assoc. Prof. Hanna B. Ambroz, Ph.D., D.Sc. Assoc. Prof. Jacek Michalik, Ph.D., D.Sc. Dr Zbigniew Zimek University of Warsaw Prof. Zbigniew Kqcki, Ph.D., D.Sc. ADDRESS OF ORGANIZING COMMITTEE Institute of Nuclear Chemistry and Technology, Dorodna 16,03-195 Warsaw, Poland phone: (0-4822) 11 23 47; telex: 813027 ichtj pi; fax: (0-4822) 11 15 32; e-mail: [email protected] .waw.pl Abstracts are published in the form as received from the Authors SPONSORS The organizers would like to thank the following sponsors for their financial support: » State Committee of Scientific Research » Stiftung fur Deutsch-Polnische Zusammenarbeit » National Atomic Energy Agency, Warsaw, Poland » Committee of Chemistry, Polish Academy of Sciences, Warsaw, Poland » Committee of Physics, Polish Academy of Sciences, Poznan, Poland » The British Council, Warsaw, Poland » CIECH S.A. » ELEKTRIM S.A. » Broker Analytische Messtechnik, Div. ESR/MINISPEC, Germany 3 CONTENTS CONFERENCE PROGRAM 9 LECTURES 15 RADICALS IN DNA AS SEEN BY ESR SPECTROSCOPY M.C.R. Symons 17 ELECTRON AND HOLE TRANSFER WITHIN DNA AND ITS HYDRATION LAYER M.D. Sevilla, D. Becker, Y. Razskazovskii 18 MODELS FOR PHOTOSYNTHETIC REACTION CENTER: STEADY STATE AND TIME RESOLVED EPR SPECTROSCOPY H. Kurreck, G. Eiger, M. Fuhs, A Wiehe, J. -
Periodic Trends and the S-Block Elements”, Chapter 21 from the Book Principles of General Chemistry (Index.Html) (V
This is “Periodic Trends and the s-Block Elements”, chapter 21 from the book Principles of General Chemistry (index.html) (v. 1.0M). This book is licensed under a Creative Commons by-nc-sa 3.0 (http://creativecommons.org/licenses/by-nc-sa/ 3.0/) license. See the license for more details, but that basically means you can share this book as long as you credit the author (but see below), don't make money from it, and do make it available to everyone else under the same terms. This content was accessible as of December 29, 2012, and it was downloaded then by Andy Schmitz (http://lardbucket.org) in an effort to preserve the availability of this book. Normally, the author and publisher would be credited here. However, the publisher has asked for the customary Creative Commons attribution to the original publisher, authors, title, and book URI to be removed. Additionally, per the publisher's request, their name has been removed in some passages. More information is available on this project's attribution page (http://2012books.lardbucket.org/attribution.html?utm_source=header). For more information on the source of this book, or why it is available for free, please see the project's home page (http://2012books.lardbucket.org/). You can browse or download additional books there. i Chapter 21 Periodic Trends and the s-Block Elements In previous chapters, we used the principles of chemical bonding, thermodynamics, and kinetics to provide a conceptual framework for understanding the chemistry of the elements. Beginning in Chapter 21 "Periodic Trends and the ", we use the periodic table to guide our discussion of the properties and reactions of the elements and the synthesis and uses of some of their commercially important compounds. -
Chemical Compounds - Vocabulary
CHEMICAL COMPOUNDS - VOCABULARY COVALENT COMPOUND A compound that has only covalent bonds between atoms of which it is made. The covalent bond results from sharing valence electrons between two atoms. The representative unit of a covalent compound is usually a molecule. IONIC COMPOUND A compound that is built of monatomic or polyatomic ions of opposite charges. The bonds between ions of opposite charges are called ionic bonds. Many, but not all ionic compounds contain a metallic element. The representative unit of an ionic compound is always a formula unit. There no molecules in ionic compounds. Ions per se are not compounds. FORMULA UNIT The smallest combination of atoms or ions that correctly represents the ratio in which they are combined in a chemical compound. Formula unit is a more general term than a molecule. ORGANIC COMPOUND A compound that is built of atoms of carbon and other elements (most commonly, hydrogen, nitrogen, oxygen, sulfur, and halogens) except for carbon monoxide, carbon dioxide, carbonic acid, carbonates, and hydrogen carbonates. If there is no carbon present, a compound is certainly inorganic. The simplest organic compound is CH4, methane. BINARY COMPOUND Ionic or covalent compound that is made of atoms of two different elements. Examples: MgCl2; Al2O3; HCl; H2O; CH4. DIATOMIC MOLECULE A molecule that is built of exactly two atoms either of the same element or of two different elements. Examples: O2; N2; CO; HF. MONATOMIC ION A single atom that lost or gained one or more electrons as compared to the neutral atom of the same element. The electric charge must be indicted when a formula of it is written unless the ion is combined with another ion in the formula of an ionic compound. -
How to Read and Interpret FTIR Spectroscope of Organic Material
97| Indonesian JournalIndonesian of Science Journal & Technology of Science &,Volum Technologye 4 Issue 4 ( 11,) (20April19 )2019 97-1 18Page 97-118 Indonesian Journal of Science & Technology Journal homepage: http://ejournal.upi.edu/index.php/ijost/ How to Read and Interpret FTIR Spectroscope of Organic Material Asep Bayu Dani Nandiyanto, Rosi Oktiani, Risti Ragadhita Departemen Kimia, Universitas Pendidikan Indonesia, Jl. Dr. Setiabudi no 229 Bandung 40154, Indonesia Correspondence: E-mail: [email protected] A B S T R A C T S A R T I C L E I N F O Article History: Fourier Transform Infrared (FTIR) has been developed as a Received 10 Jan 2019 tool for the simultaneous determination of organic Revised 20 Jan 2019 components, including chemical bond, as well as organic Accepted 31 Aug 2019 Available online 09 Apr 2019 content (e.g., protein, carbohydrate, and lipid). However, ____________________ until now, there is no further documents for describing the Keywords: detailed information in the FTIR peaks. The objective of this FTIR, study was to demonstrate how to read and assess chemical infrared spectrum, organic material, bond and structure of organic material in the FTIR, in which chemical bond, the analysis results were then compared with the literatures. organic structure. The step-by-step method on how to read the FTIR data was also presented, including reviewing simple to the complex organic materials. This study is potential to be used as a standard information on how to read FTIR peaks in the biochemical and organic materials. © 2019Tim Pengembang Jurnal UPI 1. INTRODUCTION analysis is quite rapid, good in accuracy, and relatively sensitive (Jaggi and Vij, 2006). -
Numerical Methods in Electron Magnetic Resonance
NO0000039 NUMERICAL METHODS IN ELECTRON MAGNETIC RESONANCE ANALYSES AND SIMULATIONS IN QUEST OF STRUCTURAL AND DYNAMICAL PROPERTIES OF FREE RADICALS IN SOLIDS BY ANDERS RASMUS S0RNES Thesis submitted for the degree Doctor scientiarum Department of Physics, University of Oslo 1998 31-18 Preface This thesis encompasses a collection of six theoretical and experimental Electron Magnetic Resonance (EMR) studies of the structure and dynamics of free radicals in solids. Radicals are molecular systems having one or more unpaired electron. Due to their energetically unfavourable open shell configuration, they are highly reactive. Radicals are formed in different ways. They are believed to be present in many chemical reactions as short-lived intermediate products, and they are also produced in interactions of x-radiation with matter, in Compton and photoelectric processes and interactions of their secondary electrons. Longer-lived, quasistable radicals do also exist and these may be used as spin-labels or spin-probes and may be attached to larger molecules and surfaces as measurement probes to examine the environment in their immediate vicinity. EMR is a collective term for a group of spectroscopic techniques inducing and observing transitions between the Zeeman levels of a paramagnetic system, such as a radical situated in an external magnetic field. Whithin the broader concept of EMR, the particular experimental techniques of Electron Paramagnetic Resonance (EPR), ELectron Nuclear DOuble Resonance (ENDOR), Field Swept ENDOR (FSE) and Electron Spin Echo Envelope Modulation (ESEEM) are discussed in this thesis. The focal point of this thesis is the development and use of numerical methods in the analysis, simulation and interpretation of EMR experiments on radicals in solids to uncover the structure, the dynamics and the environment of the system.