Complaint Alleges That OMICS Group, Inc., Along with Two Affiliated Companies
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Use of Omics Data in Fracture Prediction; a Scoping and Systematic Review in Horses and Humans
animals Review Use of Omics Data in Fracture Prediction; a Scoping and Systematic Review in Horses and Humans Seungmee Lee 1,*, Melissa E. Baker 1, Michael Clinton 2 and Sarah E. Taylor 1 1 The Dick Vet Equine Hospital, The Roslin Institute, Easter Bush, Roslin, Midlothian EH25 9RG, UK; [email protected] (M.E.B.); [email protected] (S.E.T.) 2 The RICE Group, Division of Gene Function and Development, The Roslin Institute, Easter Bush, Roslin, Midlothian EH25 9RG, UK; [email protected] * Correspondence: [email protected] Simple Summary: Despite many recent advances in imaging and epidemiological data analysis, musculoskeletal injuries continue to be a welfare issue in racehorses. Omics studies describe the study of protein, genetic material (both DNA and RNA, including microRNAs—small non-coding ribonucleic acids) and metabolites that may provide insights into the pathophysiology of disease or opportunities to monitor response to treatment when measured in bodily fluids. As these fields of study are scientifically complex and highly specialised, it is timely to perform a review of the current literature to allow for the design of robust studies that allow for repeatable work. Systematic reviews have been introduced into the medical literature and are a methodological way of searching for relevant papers followed by critical review of the content and a detection of biases. The objectives of the current systematic review were to identify and critically appraise the literature pertaining to microRNA (miRNA) and their target genes that are correlated with stress fractures in racehorses and humans. -
A Comprehensive Analysis of the Usability and Archival Stability of Omics Computational
bioRxiv preprint doi: https://doi.org/10.1101/452532; this version posted October 25, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Title: A comprehensive analysis of the usability and archival stability of omics computational tools and resources 1,2$# 2$ 1 1 3 1 Serghei Mangul , Thiago Mosqueiro , Dat Duong , Keith Mitchell ,Varuni Sarwal , Brian Hill , 4 1 1 1 7 Jaqueline Brito , Russell Jared Littman , Benjamin Statz , Angela Ka-Mei Lam , Gargi Dayama , 7 2 5 1,6 7,8 Laura Grieneisen , Lana S. Martin , Jonathan Flint , Eleazar Eskin , Ran Blekhman 1 Department of Computer Science, University of California Los Angeles, 580 Portola Plaza, Los Angeles, CA 90095, USA 2 Institute for Quantitative and Computational Biosciences, University of California Los Angeles, 611 Charles E. Young Drive East, Los Angeles, CA 90095, USA 3 Indian Institute of Technology Delhi, Hauz Khas, New Delhi, Delhi 110016, India 4 Institute of Mathematics and Computer Science, University of São Paulo, São Paulo, Brazil 5 Center for Neurobehavioral Genetics, Semel Institute for Neuroscience and Human Behavior, University of California Los Angeles, 760 Westwood Plaza, Los Angeles, CA 90095, USA 6 Department of Human Genetics, University of California Los Angeles, 695 Charles E. Young Drive South, Los Angeles, CA 90095, USA 7 Department of Genetics, Cell Biology and Development, University of Minnesota, 321 Church St SE, Minneapolis, MN 55455, USA 8 Department of Ecology, Evolution, and Behavior, University of Minnesota, 100 Ecology Building, 1987 Upper Buford Cir, Falcon Heights, MN 55108, USA $ - These authors contributed equally to the paper # - Corresponding author 1 bioRxiv preprint doi: https://doi.org/10.1101/452532; this version posted October 25, 2018. -
Topic 5 How Does the Regulatory Framework Affect Incentives for Research and Development?
Topic 5 How Does the Regulatory Framework Affect Incentives for Research and Development? Prepared for World Health Organization’s Commission on Intellectual Property Rights, Innovation, and Public Health (CIPIH) Response Prepared by USP CIPIH Advisory Panel International Health Expert Committee of USP’s Council of Experts November 16, 2005 Authors This paper is the work of a USP Advisory Panel whose members’ names, together with those of contributing USP staff, are included in Attachment 1. The Advisory Panel worked in accordance with USP’s rules and procedures at the direction of the International Health Expert Committee of USP’s Council of Experts, whose members’ names are included in Attachment 2. USP CIPIH Advisory Panel Response to Topic 5 November 2005 Page 2 Table of Contents Executive Summary...............................................................................................................5 Introduction............................................................................................................................7 Coincident Papers.........................................................................................................8 General Themes ............................................................................................................8 Developing Countries: The Challenges .................................................................................8 Disease Burden.............................................................................................................8 Table -
Edi3ng a Scien3fic Journal
Eding a Scienfic Journal Leading and Shaping Your Discipline Mary M. Christopher, DVM, PhD Karen M. Young, VMD, PhD ! Veterinary Medicine Small journals lack visibility • U.S. Naonal Library of Medicine indexes 5,515 in MEDLINE, of >18,000 journals received • 90% of relevant informaon is published in 10% of biomedical journals • Science Citaon Index: <2% of journals from small and developing countries • Small journals are oen ‘not seen’, even when the informaon is important Indexing + access = visibility Indexing Is your journal indexed? Where? Online publicaon Is your journal published online? Access to arcles Is a journal subscripon required to access your arcles? Indexing • A systemac organizaon of the literature to facilitate informaon retrieval • VISIBILITY: provide a simple way to gain global visibility for lile/no cost • ACCESS: can serve as a portal to online content • QUALITY: oen have criteria for technical, editorial, and research quality and a stable publicaon record Major indexers of scienfic journals Types of indexes • Open indexes – Google Scholar – Index Copernicus • Quality-controlled indexes – MEDLINE/PubMed – CAB Internaonal • Citaon indexes (also quality-controlled) – Scopus – Web of Science Indexes and journal selecon • “Bradford’s Law”: a small number of journals in a discipline publish the majority of significant scholarly work • Thus, most indexes use criteria to select journals for inclusion – Must meet basic publishing standards, publish regularly – Relevant scope – Original, peer-reviewed content – Editorial and -
Measuring Journal and Research Prestige
Measuring Journal and Research Prestige Presented by: Jaap van Harten, PhD, Executive Publisher Elsevier BV, Amsterdam, The Netherlands Location: Laval University, Québec City, Canada Date: September 22, 2014 Open(ing) Questions • What is the best scientific journal you know? • Why is that one the best? • Why couldn’t another journal be just as good? 2 Objectives • Why is there a need to discern quality among different journals? • What metrics are used to compare journals? • Which journal is most appropriate “for me” to submit my manuscript to? 3 Why is there a need to discern quality among different journals? Growth of peer-reviewed journals “This is truly the decade of the journal, and one should seek to limit their number rather than to increase them, since there can be too many periodicals.” 5 Growth of peer-reviewed journals “This is truly the decade of the journal, and one should seek to limit their number rather than to increase them, since there can be too many periodicals.” 1789 Neues medizinisches Wochenblatt für Aerzte, Wundärzte, Apotheker und Freunde der Naturwissenschaft 6 Growth of peer-reviewed journals 25.000 Number Journals of Active Number 20,000 15,000 10,000 5,000 Source: 0 <1900 1900s 1910s 1920s 1930s 1940s 1950s 1960s 1970s 1980s 1990s >2000 Decade 7 Journal Competition For example, in the category of “Analytical Chemistry” Analytica Chimica Acta Analytical Sciences Analytical Chemistry Current Analytical Chemistry Analytical Biochemistry Reviews in Analytical Chemistry Analytical and Bioanalytical Chemistry Electroanalysis Journal of Electroanalytical Chemistry Journal of Analytical Chemistry Analyst And >50 others! How can you tell which of these are high quality journals? • Journals for the best papers and the best authors • The concept of journal prestige originates from this competition 8 What metrics are used to compare journals? Overview of Journal Metrics • Journal citation data and bibliometrics can be used to measure the impact or influence of articles, authors, and journals • Impact Factor et al. -
Pharmaceutics (PCEU) 1
Pharmaceutics (PCEU) 1 PCEU 615. Applied Pharmacokinetics. 2.5 Hours. PHARMACEUTICS (PCEU) Semester course; 2.5 lecture hours. 2.5 credits. Extends the concepts of pharmacokinetics as applied to dosage regimen design, pharmacokinetic PCEU 501. Pharmaceutical Calculations. 1 Hour. variability, drug interactions and statistical strategies for individualization Semester course; 1 lecture hour. 1 credit. This course is designed in a of drug therapy. Lectures and conferences take place throughout the student-centered learning format that supports self-directed learning. The semester. course will help students develop the skill set needed to screen out the PCEU 621. Advanced Pharmaceutics and Drug Disposition. 3 Hours. distractors from the determinant variables in a statement problem and Semester course; 3 lecture hours. 3 credits. Study at the advanced guide their thought processes in sequential use of information to solve level of the relationships between the physiochemical properties of a calculation problems seen in pharmacy practice. drug and dosage form and the absorption, distribution, elimination and PCEU 507. Pharmaceutics and Biopharmaceutics I. 3 Hours. pharmacological effects of the drug. Current theory and methodology Semester course; 3 lecture hours. 3 credits. Designed to describe involved in solving problems at the research level are emphasized. the physico-chemical and biopharmaceutical principles fundamental PCEU 622. Clinical Pharmacokinetics. 3 Hours. to the development of pharmaceutical dosage forms. Topics will Semester course; 2 lecture and 2 laboratory hours. 3 credits. The include pharmaceutical calculations, solid-state properties, solubility, application of current pharmacokinetic theory to clinical problems partitioning, solution properties, disperse systems, micromeritics, involved in optimizing and monitoring drug use in patients. -
Downloaded, Cited, Published, and Discussed Online
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.04.433874; this version posted March 4, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Linguistic Analysis of the bioRxiv Preprint Landscape This manuscript (permalink) was automatically generated from greenelab/annorxiver_manuscript@7744221 on February 26, 2021. Authors David N. Nicholson 0000-0003-0002-5761 · danich1 · dnicholson329 Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine University of Pennsylvania, Philadelphia PA, USA · Funded by The Gordon and Betty Moore Foundation (GBMF4552); The National Institutes of Health (T32 HG000046) Vincent Rubinetti · vincerubinetti · vincerubinetti Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine University of Pennsylvania, Philadelphia PA, USA · Funded by The Gordon and Betty Moore Foundation (GBMF4552); The National Institutes of Health (T32 HG010067) Dongbo Hu · dongbohu Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine University of Pennsylvania, Philadelphia PA, USA · Funded by The Gordon and Betty Moore Foundation (GBMF4552); The National Institutes of Health (T32 HG010067) Marvin Thielk 0000-0002-0751-3664 · MarvinT · TheNeuralCoder Elsevier, Philadelphia PA, USA Lawrence E. Hunter 0000-0003-1455-3370 · LEHunter -
Some Thoughts on Writing and Reviewing Scientific Articles
Elsevier-sponsored workshop held at the 25th Congress of the International Society of Forensic Genetics (ISFG) Scientific Publication: Reading, Writing, and Reviewing John M. Butler, PhD U.S. National Institute of Standards and Technology (NIST) Associate Editor, Forensic Science International: Genetics Melbourne, Australia 5 September 2013 Presentation Outline The 3 R’s of Scientific Publication: Reading, (Re-)Writing, and Reviewing • Introduction • Reading – Tools for reference collection • Writing – Submission & peer-review process • Reviewing • FSI Genetics Target Audience for This Presentation • Young (or even more seasoned) scientists who want to learn how to write better or become a more effective reviewer • Anyone who wants to better understand the review process “Writing a manuscript is arguably the single most critical component to being a scientist – one for which, in many cases, formal training is minimal.” - Dr. Nathan Blow, BioTechniques editor-in-chief (May 2013, p. 235) My Qualifications on this Topic • Degrees in chemistry – BYU (B.S., 1992), University of Virginia (Ph.D., 1995) – Undergraduate classes on scientific writing and public speaking • Research-focused career E – Published ~150 articles and invited book chapters x – Given >300 presentations on scientific topics p e • Love for teaching r – Written four books (so far) on forensic DNA typing i e • Active reviewer and journal editor responsibilities n – Associate editor of Forensic Science International: Genetics since 2007 c – Reviewed hundreds of articles for -
Streptococcus Thermophilus Biofilm Formation
Streptococcus thermophilus Biofilm Formation: A Remnant Trait of Ancestral Commensal Life? Benoit Couvigny, Claire Thérial, Céline Gautier, Pierre Renault, Romain Briandet, Eric Guédon, Ali Al-Ahmad To cite this version: Benoit Couvigny, Claire Thérial, Céline Gautier, Pierre Renault, Romain Briandet, et al.. Streptococ- cus thermophilus Biofilm Formation: A Remnant Trait of Ancestral Commensal Life?. PLoS ONE, Public Library of Science, 2015, 10 (6), pp.e0128099. 10.1371/journal.pone.0128099. hal-01204465 HAL Id: hal-01204465 https://hal.archives-ouvertes.fr/hal-01204465 Submitted on 27 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License RESEARCH ARTICLE Streptococcus thermophilus Biofilm Formation: A Remnant Trait of Ancestral Commensal Life? Benoit Couvigny1,2☯, Claire Thérial1,2☯¤, Céline Gautier1,2, Pierre Renault1,2, Romain Briandet1,2, Eric Guédon1,2* 1 INRA, UMR 1319 Micalis, Domaine de Vilvert, F-78352 Jouy-en-Josas, France, 2 AgroParisTech, UMR MICALIS, Jouy-en-Josas, France ☯ These authors contributed equally to this work. ¤ Current address: Laboratoire Eau Environnement et Systèmes Urbains, Faculté des sciences et technologie, Créteil, France * [email protected] a11111 Abstract Microorganisms have a long history of use in food production and preservation. -
Comparing Journal Impact Factor and H-Type Indices in Virology Journals
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by DigitalCommons@University of Nebraska University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Library Philosophy and Practice (e-journal) Libraries at University of Nebraska-Lincoln 2012 Comparing Journal Impact Factor and H-type Indices in Virology Journals Zao Liu [email protected] Gary (Gang) Wan [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/libphilprac Part of the Library and Information Science Commons Liu, Zao and Wan, Gary (Gang), "Comparing Journal Impact Factor and H-type Indices in Virology Journals" (2012). Library Philosophy and Practice (e-journal). 891. https://digitalcommons.unl.edu/libphilprac/891 Comparing Journal Impact Factor and H-type Indices in Virology Journals Zao Liu Texas A&M University [email protected] Gary (Gang) Wan Texas A&M University Abstract This paper examines the relationships between the journal impact factor and the h-type indices in virology journals. The virology journals and their 2010 journal impact factors were retrieved from Journal Citation Reports. The h-index and the g-index values of the journals for 2007-2011 were obtained from Web of Science and Google Scholar. The journals were ranked by their journal impact factor and h-indices. The correlation analysis of the measures found a strong relationship between the journal impact factor and the h-type indices, and a stronger tie between the h-indices themselves. Despite the strong correlations between the measures, differences in rankings of the journals with the journal impact factor and the h-type indices were found, and possible explanations for the differences were provided. -
Guidelines for Authors (Revised January 2010)
Guidelines for Authors (Revised January 2010) Contents (click on the topic) Objectives – Articles – Brief Articles – Current Reviews – Communications | Editorial Organization | Preparation of Electronic Manuscripts | Assembly of Manuscripts – Author Checklist – Title Page – Table of Contents Graphic – Abstract – Keywords – Abbreviations – Introduction – Experimental Section – Results – Discussion – Acknowledgment – Supporting Information – References – Tables – Figure Captions – Illustrations: Figures, Schemes, etc. – Nomenclature – Software – Coordinate Deposition | Submission – Copyright | Publication – Proofs – “Just Accepted” Manuscripts – ASAP Publication – ACS Policies for E-prints and Reprints Objectives The purpose of Molecular Pharmaceutics is to publish the results of original research that contributes significantly to the molecular mechanistic understanding of drug delivery and drug delivery systems. The journal encourages contributions describing research at the interface of drug discovery and drug development. Scientific areas within the scope of the journal include physical and pharmaceutical chemistry, biochemistry and biophysics, molecular and cellular biology, and polymer and materials science as they relate to drug and drug delivery system efficacy. Theoretical and experimental peer-reviewed communications, full-length research papers, brief articles, and critical reviews are welcomed. Submission of a manuscript to Molecular Pharmaceutics implies that the same work has not been previously published, including as part -
A Bibliometric Analysis of Virology in Colombia (2000–2013)
Original Article Virology research in a Latin American developing country: a bibliometric analysis of virology in Colombia (2000–2013) Julian Ruiz-Saenz1,3, Marlen Martinez-Gutierrez1,2,3 1 Grupo de Investigación en Ciencias Animales-GRICA, Facultad de Medicina Veterinaria y Zootecnia, Universidad Cooperativa de Colombia, Bucaramanga, Colombia 2 Grupo de Investigación Infettare, Facultad de Medicina, Universidad Cooperativa de Colombia, Medellín, Colombia 3 Asociación Colombiana de Virología, Bogotá, Colombia Abstract Introduction: Bibliometric analysis demonstrates that the virology research in Latin America has increased. For this reason, the objective of this study was to evaluate Colombian publications on viruses and viral diseases in indexed journals during the period from 2000 to 2013. Methodology: The bibliographic data were collected from MedLine, SciELO, LILACS and Scopus databases. The database was constructed in Excel descriptive statistics. The SCImago Journal Rank (SJR) was evaluated using the SCImago Journal & Country Rank in 2013 and was used as an indicator of the quality of the journals used by the Colombian researchers. Results: The total number of papers published was 711, of which 40.4% were published in local journals, and 59.6% were published in foreign journals. Most (89.2%) were original papers. Moreover, 34.2% of the papers were published in collaboration with international researchers, with the United States being the most represented. Of the journals used, 85.6% had an SJR, and 14.4% did not. The median SJR of the papers was 0.789, and the median of the papers with international collaborators was higher compared to the SJR of the papers without international collaboration.