(FMIPA) DAN TEKNIK KIMIA ( FTI) ACS E-Journals
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Biomedical Text Mining: a Survey of Recent Progress
Chapter 14 BIOMEDICAL TEXT MINING: A SURVEY OF RECENT PROGRESS Matthew S. Simpson Lister Hill National Center for Biomedical Communications United States National Library of Medicine, National Institutes of Health [email protected] Dina Demner-Fushman Lister Hill National Center for Biomedical Communications United States National Library of Medicine, National Institutes of Health [email protected] Abstract The biomedical community makes extensive use of text mining tech- nology. In the past several years, enormous progress has been made in developing tools and methods, and the community has been witness to some exciting developments. Although the state of the community is regularly reviewed, the sheer volume of work related to biomedical text mining and the rapid pace in which progress continues to be made make this a worthwhile, if not necessary, endeavor. This chapter pro- vides a brief overview of the current state of text mining in the biomed- ical domain. Emphasis is placed on the resources and tools available to biomedical researchers and practitioners, as well as the major text mining tasks of interest to the community. These tasks include the recognition of explicit facts from biomedical literature, the discovery of previously unknown or implicit facts, document summarization, and question answering. For each topic, its basic challenges and methods are outlined and recent and influential work is reviewed. Keywords: Biomedical information extraction, named entity recognition, relations, events, summarization, question answering, literature-based discovery C.C. Aggarwal and C.X. Zhai (eds.), Mining Text Data, DOI 10.1007/978-1-4614-3223-4_14, 465 © Springer Science+Business Media, LLC 2012 466 MINING TEXT DATA 1. -
MEDLINE® Comprehensive Biomedical and Health Sciences Information
ValuaBLE CONTENT; HIGhly FOCUSED seaRCH capaBILITIES MEDLINE® COMPREHENSIVE BIOmedical AND health SCIENCES INFORmatiON WHAT YOU’LL FIND WHAT YOU CAN DO • Content from over 5,300 journals in • Keep abreast of vital life sciences information 30 languages, plus a select number of • Uncover relevant results in related fields relevant items from newspapers, magazines, and newsletters • Identify potential collaborators with significant citation records • Over 17 million records from publications worldwide • Discover emerging trends that help you pursue successful research and grant acquisition • Approximately 600,000 records added annually • Target high-impact journals for publishing • Links from MEDLINE records to the valuable your manuscript NCBI protein and DNA sequence databases, and to PubMed Related Articles • Integrate searching, writing, and bibliography creation into one streamlined process • Direct links to your full-text collections • Fully searchable and indexed backfiles to 1950 • Full integration with ISI Web of Knowledge content and capabilities GLOBAL COVERAGE AND SPECIALIZED INDEXING ACCESS THE MOST RECENT INFORMAtion — AS MEDLINE is the U.S. National Library of Medicine® WELL AS BACKFILES TO 1950 (NLM®) premier bibliographic database, covering Discover the most recent information by viewing biomedicine and life sciences topics vital to biomedical MEDLINE In-Process records, recently added records practitioners, educators, and researchers. You’ll find that haven’t yet been fully indexed. And track nearly 60 coverage of the full range of disciplines, such as years of vital backfile data to find the supporting — or medicine, life sciences, behavioral sciences, chemical refuting — data you need. More backfiles give you the sciences, and bioengineering, as well as nursing, power to conduct deeper, more comprehensive searches dentistry, veterinary medicine, the health care system, and track trends through time. -
Exploring the Stability of Publication Regimes in Chemistry
ARTICLE https://doi.org/10.1057/s41599-020-00543-6 OPEN Back to disciplines: exploring the stability of publication regimes in chemistry: the case of the Journal of the American Chemical Society (1879–2010) ✉ Marianne Noel1 1234567890():,; Based on a case study, this article explores the stability of publication regimes (as defined by Hilgartner (2015, 2017)) in chemistry. Starting with a slight detour via open access (OA) policies, it concentrates on the conditions of editorial production and trade of a scholarly journal, from an historical perspective enriched by a sociology of valuation and pricing. Prices are seen as social constructs as I consider the modalities of market coordination among actors of the publishing enterprise in a major scholarly society, the American Chemical Society (ACS). The study focuses on the Journal of the American Chemical Society (JACS), a periodical that was founded in 1879 by the ACS, of which it is the “flagship” journal. The investigation relies mainly on a detailed examination of the JACS imprint from a diachronic perspective (1879–2010). I describe how scientific papers (as singular entities) gradually entered into a commodity market, first with the page-charge mechanism and the imposition of authors’ fees, up to the emergence of the Article Processing Charge (APC) model, where the authors/institutions pay fees to have the electronic versions of their articles in OA. The proposed timeline in five periods is marked by two points of rupture that correspond to State intervention and the adoption of federal laws. Inherited from the deployment of science regimes in the post-WWII period, revenue collection models were collectively invented by the ACS and its members as successive adjustments to address massive imbalances caused by changes in scientific, institutional, and regulatory environments. -
Information-Seeking Behavior in Complementary and Alternative Medicine (CAM): an Online Survey of Faculty at a Health Sciences Campus*
Information-seeking behavior in complementary and alternative medicine (CAM): an online survey of faculty at a health sciences campus* By David J. Owen, M.L.S., Ph.D. [email protected] Education Coordinator, Basic Sciences Min-Lin E. Fang, M.L.I.S. [email protected] Information Services Librarian Kalmanovitz Library and Center for Knowledge Management University of California, San Francisco San Francisco, California 94143-0840 Background: The amount of reliable information available for complementary and alternative medicine (CAM) is limited, and few authoritative resources are available. Objective: The objective is to investigate the information-seeking behavior of health professionals seeking CAM information. Methods: Data were gathered using a Web-based questionnaire made available to health sciences faculty af®liated with the University of California, San Francisco. Results: The areas of greatest interest were herbal medicine (67%), relaxation exercises (53%), and acupuncture (52%). About half the respondents perceived their CAM searches as being only partially successful. Eighty-two percent rated MEDLINE as a useful resource, 46% personal contacts with colleagues, 46% the Web, 40% journals, and 20% textbooks. Books and databases most frequently cited as useful had information about herbs. The largest group of respondents was in internal medicine (26%), though 15% identi®ed their specialties as psychiatry, psychology, behavioral medicine, or addiction medicine. There was no correlation between specialty and patterns of information- seeking behavior. Sixty-six percent expressed an interest in learning more about CAM resources. Conclusions: Health professionals are frequently unable to locate the CAM information they need, and the majority have little knowledge of existing CAM resources, relying instead on MEDLINE. -
Exploring Biomedical Records Through Text Mining-Driven Complex Data Visualisation
medRxiv preprint doi: https://doi.org/10.1101/2021.03.27.21250248; this version posted March 29, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission. Exploring biomedical records through text mining-driven complex data visualisation Joao Pita Costa Luka Stopar Luis Rei Institute Jozef Stefan Institute Jozef Stefan Institute Jozef Stefan Ljubljana, Slovenia Ljubljana, Slovenia Ljubljana, Slovenia [email protected] [email protected] [email protected] Besher Massri Marko Grobelnik Institute Jozef Stefan Institute Jozef Stefan Ljubljana, Slovenia Ljubljana, Slovenia [email protected] [email protected] ABSTRACT learning technologies that have been entering the health domain The recent events in health call for the prioritization of insightful at a slow and cautious pace. The emergencies caused by the recent and meaningful information retrieval from the fastly growing pool pandemics and the need to act fast and accurate were a motivation of biomedical knowledge. This information has its own challenges to fast forward some of the modernization of public health and both in the data itself and in its appropriate representation, enhanc- healthcare information systems. Though, the amount of available ing its usability by health professionals. In this paper we present information and its heterogeneity creates obstacles in its usage in a framework leveraging the MEDLINE dataset and its controlled meaningful ways. vocabulary, the MeSH Headings, to annotate and explore health- related documents. The MEDijs system ingests and automatically annotates text documents, extending their legacy metadata with MeSH Headings. -
1 Application of Text Mining to Biomedical Knowledge Extraction: Analyzing Clinical Narratives and Medical Literature
Amy Neustein, S. Sagar Imambi, Mário Rodrigues, António Teixeira and Liliana Ferreira 1 Application of text mining to biomedical knowledge extraction: analyzing clinical narratives and medical literature Abstract: One of the tools that can aid researchers and clinicians in coping with the surfeit of biomedical information is text mining. In this chapter, we explore how text mining is used to perform biomedical knowledge extraction. By describing its main phases, we show how text mining can be used to obtain relevant information from vast online databases of health science literature and patients’ electronic health records. In so doing, we describe the workings of the four phases of biomedical knowledge extraction using text mining (text gathering, text preprocessing, text analysis, and presentation) entailed in retrieval of the sought information with a high accuracy rate. The chapter also includes an in depth analysis of the differences between clinical text found in electronic health records and biomedical text found in online journals, books, and conference papers, as well as a presentation of various text mining tools that have been developed in both university and commercial settings. 1.1 Introduction The corpus of biomedical information is growing very rapidly. New and useful results appear every day in research publications, from journal articles to book chapters to workshop and conference proceedings. Many of these publications are available online through journal citation databases such as Medline – a subset of the PubMed interface that enables access to Medline publications – which is among the largest and most well-known online databases for indexing profes- sional literature. Such databases and their associated search engines contain important research work in the biological and medical domain, including recent findings pertaining to diseases, symptoms, and medications. -
Fall-2020-Print-Axia
INSIDE THIS SPECIAL FALL 2020 Contents EDITION OF ACS AXIAL axial.acs.org deeper ACS PUBLICATIONS SHANGHAITECH UNIVERSITY NEW ENVIRONMENTAL SCIENCE & WHAT CHEMISTS NEED LAUNCHESdive NEW JOURNALS PARTNERS WITH ACS PUBLICATIONS TO TECHNOLOGY JOURNALS TO KNOW ABOUT Explore the ResearchFOCUSED behind ON theFOOD 2020 AND Journal Citation Reports® LAUNCH ACCOUNTS OF MATERIALS NAME EDITORS AND MACHINE LEARNING AGRICULTURAL CHEMISTRY RESEARCH OPEN FOR SUBMISSIONS The 2020 Journal Citation Reports® (JCR) show the vital role ACS Publications journals play in publishing important, highly cited research. Thanks to the dedication and brilliance of our authors and reviewers, 89% of ACS journals have an Impact Factor greater than 3 this year. Browse this year’s JCR figures, which are based on citations from 2018 to 2019: EXPLORE THE RESEARCH HOW ACS IS SUPPORTING THE LEARN HOW ACS SUPPORTS SCIMEETINGS: PRESENT YOUR RESEARCH BEHIND THE 2020 JOURNAL CHEMISTRY COMMUNITY DURING THE OPEN SCIENCE BEYOND THE ACS FALL 2020 VIRTUAL CITATION REPORTS® COVID-19 PANDEMIC MEETING & EXPO Impact Factor 20.832 Impact Factor 4.473 Impact Factor Impact Factor 4.152 8.758 Impact Factor Impact Factor 4.486 Impact Factor 12.685 12.350 Impact Factor 4.434 Impact Factor Impact Factor 3.381 19.003 Impact Factor 3.418 Impact Factor Impact Factor 3.975 Impact Factor 4.614 6.042 Impact Factor Impact Factor Impact Factor 7.333 14.588 6.864 Impact Factor 2.870 Impact Factor Impact Factor 6.785 4.411 Impact Factor 7.632 Impact Factor 6.092 Impact Factor 2.865 Impact Factor 4.031 pubs.acs.org/acsagscitech ACS PUBLICATIONS LAUNCHES NEW JOURNALS FOCUSED ON FOOD AND AGRICULTURAL CHEMISTRY ournal of Agricultural and Food Chemistry Technical University of Munich and the chair of is growing into a family of journals with the Food Chemistry and Molecular Sensors. -
Marnix Medema Curriculum Vitae
Page 1 of 10 Curriculum vitae Personal Information FIRST NAME / SURNAME Marnix Medema ADDRESS (PRIVATE) Soetendaalseweg 16A, 6721XB Bennekom, NL ADDRESS (WORK) Droevendaalsesteeg 1, 6708PB Wageningen, NL TEL +31317484706 / +31654758321 (cell) EMAIL [email protected] WEB http://www.marnixmedema.nl NATIONALITY Dutch DATE OF BIRTH 24.01.1986 GENDER Male Work Experience & Education DATES March 2015 - present EMPLOYER Wageningen University, Wageningen, The Netherlands POSITION Assistant Professor DATES August 2013 - February 2015 EMPLOYER MPI for Marine Microbiology, Bremen, Germany POSITION Postdoctoral Researcher DATES September 2010 - March 2011 EMPLOYER University of California, San Francisco, USA POSITION Visiting Research Scholar DATES September 2009 - August 2013 EMPLOYER University of Groningen, The Netherlands POSITION PhD Student DATE / DISTINCTION 27.09.2013, cum laude ** DATES September 2006 - August 2008 QUALIFICATION AWARDED Master of Science Biomolecular Science, cum laude ** INSTITUTION University of Groningen, The Netherlands DATES September 2003 - August 2006 QUALIFICATION AWARDED Bachelor of Science Biology, cum laude ** INSTITUTION Radboud University Nijmegen, The Netherlands ** In the Netherlands, only two classes of honors are used: eervolle vermelding ("honorable mention") and cum laude, typically only to mark exceptional achievement. [...] Generally, less than 20% receive the "honorable mention" distinction, and "cum laude" is even harder to attain (less than 1%-5% depending on the university and study program). -
Pharmaceutics (PCEU) 1
Pharmaceutics (PCEU) 1 PCEU 615. Applied Pharmacokinetics. 2.5 Hours. PHARMACEUTICS (PCEU) Semester course; 2.5 lecture hours. 2.5 credits. Extends the concepts of pharmacokinetics as applied to dosage regimen design, pharmacokinetic PCEU 501. Pharmaceutical Calculations. 1 Hour. variability, drug interactions and statistical strategies for individualization Semester course; 1 lecture hour. 1 credit. This course is designed in a of drug therapy. Lectures and conferences take place throughout the student-centered learning format that supports self-directed learning. The semester. course will help students develop the skill set needed to screen out the PCEU 621. Advanced Pharmaceutics and Drug Disposition. 3 Hours. distractors from the determinant variables in a statement problem and Semester course; 3 lecture hours. 3 credits. Study at the advanced guide their thought processes in sequential use of information to solve level of the relationships between the physiochemical properties of a calculation problems seen in pharmacy practice. drug and dosage form and the absorption, distribution, elimination and PCEU 507. Pharmaceutics and Biopharmaceutics I. 3 Hours. pharmacological effects of the drug. Current theory and methodology Semester course; 3 lecture hours. 3 credits. Designed to describe involved in solving problems at the research level are emphasized. the physico-chemical and biopharmaceutical principles fundamental PCEU 622. Clinical Pharmacokinetics. 3 Hours. to the development of pharmaceutical dosage forms. Topics will Semester course; 2 lecture and 2 laboratory hours. 3 credits. The include pharmaceutical calculations, solid-state properties, solubility, application of current pharmacokinetic theory to clinical problems partitioning, solution properties, disperse systems, micromeritics, involved in optimizing and monitoring drug use in patients. -
Citation Success Index – an Intuitive Pair- Wise Journal Comparison Metric
Citation success index – An intuitive pair- wise journal comparison metric Staša Milojević1, Filippo Radicchi1 and Judit Bar-Ilan2 1School of Informatics and Computing, Indiana University, Bloomington, USA 2Department of Information Science, Bar-Ilan University, Ramat Gan, 5290002, Israel In this paper we present “citation success index”, a metric for comparing the citation capacity of pairs of journals. Citation success index is the probability that a random paper in one journal has more citations than a random paper in another journal (50% means the two journals do equally well). Unlike the journal impact factor (IF), the citation success index depends on the broadness and the shape of citation distributions. Also, it is insensitive to sporadic highly-cited papers that skew the IF. Nevertheless, we show, based on 16,000 journals containing ~2.4 million articles, that the citation success index is a relatively tight function of the ratio of IFs of journals being compared, due to the fact that journals with same IF have quite similar citation distributions. The citation success index grows slowly as a function of IF ratio. It is substantial (>90%) only when the ratio of IFs exceeds ~6, whereas a factor of two difference in IF values translates into a modest advantage for the journal with higher IF (index of ~70%). We facilitate the wider adoption of this metric by providing an online calculator that takes as input parameters only the IFs of the pair of journals. 1. Introduction Most authors of research articles, whether in teams or as individuals, ultimately aim to maximize the impact of their publications, even when this goal is expressed as a desire to reach the widest possible audience (Gordon, 1984; Luukkonen, 1992). -
Guidelines for Authors (Revised January 2010)
Guidelines for Authors (Revised January 2010) Contents (click on the topic) Objectives – Articles – Brief Articles – Current Reviews – Communications | Editorial Organization | Preparation of Electronic Manuscripts | Assembly of Manuscripts – Author Checklist – Title Page – Table of Contents Graphic – Abstract – Keywords – Abbreviations – Introduction – Experimental Section – Results – Discussion – Acknowledgment – Supporting Information – References – Tables – Figure Captions – Illustrations: Figures, Schemes, etc. – Nomenclature – Software – Coordinate Deposition | Submission – Copyright | Publication – Proofs – “Just Accepted” Manuscripts – ASAP Publication – ACS Policies for E-prints and Reprints Objectives The purpose of Molecular Pharmaceutics is to publish the results of original research that contributes significantly to the molecular mechanistic understanding of drug delivery and drug delivery systems. The journal encourages contributions describing research at the interface of drug discovery and drug development. Scientific areas within the scope of the journal include physical and pharmaceutical chemistry, biochemistry and biophysics, molecular and cellular biology, and polymer and materials science as they relate to drug and drug delivery system efficacy. Theoretical and experimental peer-reviewed communications, full-length research papers, brief articles, and critical reviews are welcomed. Submission of a manuscript to Molecular Pharmaceutics implies that the same work has not been previously published, including as part -
2017 Catalog 2017 Catalog
2017CATALOG ABOUT ACS AMERICAN CHEMICAL SOCIETY With more than 157,000 members, the American Chemical Society (ACS) Table of Contents>>> is the world’s largest scientific society and one of the world’s leading sources of authoritative scientific information. A nonprofit organization chartered by Congress, ACS is at the forefront of the evolving About ACS Publications ................................................................................. 3 worldwide chemical enterprise and the premier professional home for chemists, chemical Editorial Excellence for 138 years ..............................................................................................................4 What Fuels ACS Publications’ Growth ......................................................................................................6 engineers, and related professionals around the globe. ACS Publications’ Unsurpassed Performance .........................................................................................8 ACS Publications’ Impact on Chemistry ................................................................................................ 10 Select Highlights from ACS Journals ...................................................................................................... 12 An Inspiring Online Platform ................................................................................................................... 14 ACS on Campus ..........................................................................................................................................