Comparing Journal Impact Factor and H-Type Indices in Virology Journals
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Key Factors That Enable the Pandemic Potential of RNA Viruses and Inter-Species Transmission: a Systematic Review
viruses Review Key Factors That Enable the Pandemic Potential of RNA Viruses and Inter-Species Transmission: A Systematic Review Santiago Alvarez-Munoz , Nicolas Upegui-Porras , Arlen P. Gomez and Gloria Ramirez-Nieto * Microbiology and Epidemiology Research Group, Facultad de Medicina Veterinaria y de Zootecnia, Universidad Nacional de Colombia, Bogotá 111321, Colombia; [email protected] (S.A.-M.); [email protected] (N.U.-P.); [email protected] (A.P.G.) * Correspondence: [email protected]; Tel.: +57-1-3-16-56-93 Abstract: Viruses play a primary role as etiological agents of pandemics worldwide. Although there has been progress in identifying the molecular features of both viruses and hosts, the extent of the impact these and other factors have that contribute to interspecies transmission and their relationship with the emergence of diseases are poorly understood. The objective of this review was to analyze the factors related to the characteristics inherent to RNA viruses accountable for pandemics in the last 20 years which facilitate infection, promote interspecies jump, and assist in the generation of zoonotic infections with pandemic potential. The search resulted in 48 research articles that met the inclusion criteria. Changes adopted by RNA viruses are influenced by environmental and host-related factors, which define their ability to adapt. Population density, host distribution, migration patterns, and the loss of natural habitats, among others, have been associated as factors in the virus–host interaction. This review also included a critical analysis of the Latin American context, considering its diverse and unique social, cultural, and biodiversity characteristics. The scarcity of scientific information is Citation: Alvarez-Munoz, S.; striking, thus, a call to local institutions and governments to invest more resources and efforts to the Upegui-Porras, N.; Gomez, A.P.; study of these factors in the region is key. -
Northern African Strains of Human T-Lymphotropic Virus Type 1 Arose from a Recombination Event
Desrames et al. Retrovirology 2015, 12(Suppl 1):P80 http://www.retrovirology.com/content/12/S1/P80 POSTERPRESENTATION Open Access Northern African strains of human T-lymphotropic virus type 1 arose from a recombination event A Desrames1*, O Cassar1, O Gout2, O Hermine3, GP Taylor4, PV Afonso1, A Gessain1 From 17th International Conference on Human Retroviruses: HTLV and Related Viruses Trois Ilets, Martinique. 18-21 June 2015 Although recombination is a major source of genetic from HTLV-1 infected patients of diverse African origin. variability in retroviruses, no recombinant strain had The data on this on-going study will be presented. been observed for HTLV-1, the first isolated human- pathogenic retrovirus. Different genotypes exist for Authors’ details HTLV-1: Genotypes b and d to g are restricted to central 1Institut Pasteur, Unité d’Epidémiologie et Physiopathologie des Virus Africa, while genotype c is only endemic in Australo- Oncogènes, Département de Virologie, Paris, France CNRS, UMR 3569, Paris, 2 Melanesia. In contrast, the cosmopolitan genotype A is France. Service de Neurologie, Fondation Rothschild, Paris, France. 3Service d’Hématologie, Hôpital Necker, Paris, France. 4Section of Infectious widely distributed. We applied a combination of phyloge- Diseases, Faculty of Medicine, Imperial College, London, UK. netics and recombination analysis approaches to a set of new HTLV-1 sequences, including the complete LTR Published: 28 August 2015 and a 522-bp fragment of the env gene, which we col- lected from 19 countries throughout North, West and Central Africa, the continent where the virus has the lar- doi:10.1186/1742-4690-12-S1-P80 Cite this article as: Desrames et al.: Northern African strains of human gest endemic presence. -
A Novel Method to Examine Individual RNA Structures Within a Mixed Population Reveals Insights Into the HIV-1 RNA Dimerization P
Kenyon et al. Retrovirology 2013, 10(Suppl 1):P41 http://www.retrovirology.com/content/10/S1/P41 POSTERPRESENTATION Open Access A novel method to examine individual RNA structures within a mixed population reveals insights into the HIV-1 RNA dimerization process Julia Kenyon1*, Liam Prestwood1, Stuart Le Grice2, Andrew Lever1 From Frontiers of Retrovirology: Complex retroviruses, retroelements and their hosts Cambridge, UK. 16-18 September 2013 Different models have been proposed for the HIV-1 RNA Authors’ details 1Department of Medicine, University of Cambridge, Cambridge, UK. 2HIV monomer and dimer structures, often by studying Drug Resistance Program, Center for Cancer Research, National Cancer mutants that disrupt the palindromic nature of the Institute, Frederick, MD 21702-1201, USA. dimerisation initiation site (DIS) to stabilise the mono- Published: 19 September 2013 mer. We have developed a new technique known as “ingel SHAPE (selective 2’OH acylation analysed by pri- mer extension)”. Individual RNA structures within a doi:10.11861742-4690-10-S1-P41 mixed structural population are isolated by electrophor- Cite this article as: Kenyon et al.: A novel method to examine individual esis under native conditions, and secondary structural RNA structures within a mixed population reveals insights into the HIV- probing takes place within the gel. High-throughput ana- 1 RNA dimerization process. Retrovirology 2013 10(Suppl 1):P41. lysis generates a secondary structural map of each RNA, making it possible to examine the structures of different conformers under native conditions, without the need to stabilise each structure by mutagenesis or by using non- physiological buffers. We have validated the technique using TAR RNA, and show it to be accurate and highly reproducible. -
Protease Inhibitors Effectively Block Cell-To-Cell Spread of HIV-1 Between T Cells Boghuma Kabisen Titanji1, Marlen Aasa-Chapman1, Deenan Pillay1,2 and Clare Jolly1*
Titanji et al. Retrovirology 2013, 10:161 http://www.retrovirology.com/content/10/1/161 RESEARCH Open Access Protease inhibitors effectively block cell-to-cell spread of HIV-1 between T cells Boghuma Kabisen Titanji1, Marlen Aasa-Chapman1, Deenan Pillay1,2 and Clare Jolly1* Abstract Background: The Human Immunodeficiency Virus type-1 (HIV-1) spreads by cell-free diffusion and by direct cell-to-cell transfer, the latter being a significantly more efficient mode of transmission. Recently it has been suggested that cell-to-cell spread may permit ongoing virus replication in the presence of antiretroviral therapy (ART) based on studies performed using Reverse Transcriptase Inhibitors (RTIs). Protease Inhibitors (PIs) constitute an important component of ART; however whether this class of inhibitors can suppress cell-to-cell transfer of HIV-1 is unexplored. Here we have evaluated the inhibitory effect of PIs during cell-to-cell spread of HIV-1 between T lymphocytes. Results: Using quantitative assays in cell line and primary cell systems that directly measure the early steps of HIV-1 infection we find that the PIs Lopinavir and Darunavir are equally potent against both cell-free and cell-to-cell spread of HIV-1. We further show that a protease resistant mutant maintains its resistant phenotype during cell-to-cell spread and is transmitted more efficiently than wild-type virus in the presence of drug. By contrast we find that T cell-T cell spread of HIV-1 is 4–20 fold more resistant to inhibition by the RTIs Nevirapine, Zidovudine and Tenofovir. Notably, varying the ratio of infected and uninfected cells in co-culture impacted on the degree of inhibition, indicating that the relative efficacy of ART is dependent on the multiplicity of infection. -
A Bibliometric Analysis of Virology in Colombia (2000–2013)
Original Article Virology research in a Latin American developing country: a bibliometric analysis of virology in Colombia (2000–2013) Julian Ruiz-Saenz1,3, Marlen Martinez-Gutierrez1,2,3 1 Grupo de Investigación en Ciencias Animales-GRICA, Facultad de Medicina Veterinaria y Zootecnia, Universidad Cooperativa de Colombia, Bucaramanga, Colombia 2 Grupo de Investigación Infettare, Facultad de Medicina, Universidad Cooperativa de Colombia, Medellín, Colombia 3 Asociación Colombiana de Virología, Bogotá, Colombia Abstract Introduction: Bibliometric analysis demonstrates that the virology research in Latin America has increased. For this reason, the objective of this study was to evaluate Colombian publications on viruses and viral diseases in indexed journals during the period from 2000 to 2013. Methodology: The bibliographic data were collected from MedLine, SciELO, LILACS and Scopus databases. The database was constructed in Excel descriptive statistics. The SCImago Journal Rank (SJR) was evaluated using the SCImago Journal & Country Rank in 2013 and was used as an indicator of the quality of the journals used by the Colombian researchers. Results: The total number of papers published was 711, of which 40.4% were published in local journals, and 59.6% were published in foreign journals. Most (89.2%) were original papers. Moreover, 34.2% of the papers were published in collaboration with international researchers, with the United States being the most represented. Of the journals used, 85.6% had an SJR, and 14.4% did not. The median SJR of the papers was 0.789, and the median of the papers with international collaborators was higher compared to the SJR of the papers without international collaboration. -
Publications on COVID-19 in High Impact Factor
DOI: https://doi.org/10.11144/Javeriana.upsy19.pchi Publications on COVID-19 in High Impact Factor Journals: A Bibliometric Analysis* Publicaciones sobre COVID-19 en revistas científicas con alto factor de impacto: Un análisis bibliométrico Received: 04 June 2020 | Accepted: 16 July 2020 Wilson López-López Pontificia Universidad Javeriana, Colombia ORCID: https://orcid.org/0000-0002-2964-0402 Gonzalo Salas Universidad Católica del Maule, Chile ORCID: https://orcid.org/0000-0003-0707-8188 Maribel Vega-Arce Universidad Católica del Maule, Chile ORCID: https://orcid.org/0000-0002-8251-3058 Claudia A. Cornejo-Araya Universidad Católica del Maule, Chile ORCID: https://orcid.org/0000-0002-8054-9487 Miguel Barboza-Palomino Universidad Privada del Norte, Perú ORCID: https://orcid.org/0000-0001-8045-5491 Yu-Shan Hoa Asia University, Taiwán ORCID: https://orcid.org/0000-0002-2557-8736 ABSTRACT The COVID-19 pandemic caused by the SARS-CoV-2 virus has sickened more than six million people worldwide. This context has led to an abundance of publications quickly since the beginning of the outbreak. In a few months, thousands of scientific papers have appeared. This article aims to provide a bibliometric analysis of the publications on COVID-19 in five high-impact journals indexed to the Web of Science Core Collection's Science Citation Index Expanded (SCI-EXPANDED) a Correspondence author. E-mail: [email protected] including The Lancet, New England Journal of Medicine, Science, Nature, and JAMA-Journal of the American Medical Association. We found 169 documents associated with the search criteria. The findings indicate How to cite: López-López, W., Salas, G., Vega-Arce, that China, the United States, and the United Kingdom are the most C. -
Journal Catalog 2019 1
BENTHAM SCIENCE Bentham Science Publishers is a major STM journal and e-book publisher of 115 plus journal titles and over 800 e-books, helping to answer the information needs of the scientific AN INTRODUCTION research community. The leading journals in the field include. Current Neuropharmacology : I.F. 4.06 Current Medicinal Chemistry : I.F. 3.46 Current Topics in Medicinal Chemistry : I.F. 3.37 Current Alzheimer Research : I.F. 3.28 Current Drug Targets : I.F. 3.11 Current Pharmaceutical Design : I.F. 2.75 Ordering Information We offer great discounts for direct multiple subscription orders (institutional and personal), global and multi-site online licenses and consortia licenses. 3-Month FREE Online Journal Trial: We currently offer institutions the possibility of gaining FREE access to all Bentham titles for a 3-month period. Subscription Information: All journals are available online. For information on the journals and how to order, please visit our web site at www.benthamscience.com and select "Prices and Ordering Information" or contact our Subscription Department. Journal Sample Copies Pay-Per-View: As an alternative to subscription, you can access a single manuscript online. Through online payment, Sample Copy(s): We offer you the possibility of ordering get instant access to any full-text article of your choice. free print sample copies or viewing free online sample For information, visit our web site at: www.eurekaselect.com copies. For information, visit www.benthamscience.com and select Free Online Journals and Trials Subscription Department Marketing and advertising inquiries Bentham Science [email protected] Executive Suite Y - 2 P.O. -
Chikungunya-Dengue Co-Infection.Pdf
Furuya-Kanamori et al. BMC Infectious Diseases (2016) 16:84 DOI 10.1186/s12879-016-1417-2 RESEARCH ARTICLE Open Access Co-distribution and co-infection of chikungunya and dengue viruses Luis Furuya-Kanamori1*, Shaohong Liang2, Gabriel Milinovich3, Ricardo J. Soares Magalhaes4,5, Archie C. A. Clements1, Wenbiao Hu3, Patricia Brasil6, Francesca D. Frentiu7, Rebecca Dunning8 and Laith Yakob9 Abstract Background: Chikungunya and dengue infections are spatio-temporally related. The current review aims to determine the geographic limits of chikungunya, dengue and the principal mosquito vectors for both viruses and to synthesise current epidemiological understanding of their co-distribution. Methods: Three biomedical databases (PubMed, Scopus and Web of Science) were searched from their inception until May 2015 for studies that reported concurrent detection of chikungunya and dengue viruses in the same patient. Additionally, data from WHO, CDC and Healthmap alerts were extracted to create up-to-date global distribution maps for both dengue and chikungunya. Results: Evidence for chikungunya-dengue co-infection has been found in Angola, Gabon, India, Madagascar, Malaysia, Myanmar, Nigeria, Saint Martin, Singapore, Sri Lanka, Tanzania, Thailand and Yemen; these constitute only 13 out of the 98 countries/territories where both chikungunya and dengue epidemic/endemic transmission have been reported. Conclusions: Understanding the true extent of chikungunya-dengue co-infection is hampered by current diagnosis largely based on their similar symptoms. Heightened awareness of chikungunya among the public and public health practitioners in the advent of the ongoing outbreak in the Americas can be expected to improve diagnostic rigour. Maps generated from the newly compiled lists of the geographic distribution of both pathogens and vectors represent the current geographical limits of chikungunya and dengue, as well as the countries/territories at risk of future incursion by both viruses. -
A Bibliometric Analysis
International Journal of Environmental Research and Public Health Article Twenty-Year Span of Global Coronavirus Research Trends: A Bibliometric Analysis Yi Zhou 1 and Liyu Chen 2,* 1 Xiangya School of Medicine, Central South University, Changsha 410013, China; [email protected] 2 Department of Microbiology, School of Basic Medical Sciences, Central South University, Changsha 410078, China * Correspondence: [email protected]; Tel.: +86-0731-8235-5003 Received: 27 March 2020; Accepted: 25 April 2020; Published: 28 April 2020 Abstract: The coronavirus disease 2019 (COVID-19) pandemic aroused global public concern and became a major medical issue. This study aims to investigate the global research routine and trends of coronavirus over the last twenty years based on the production, hotspots, and frontiers of published articles as well as to provide the global health system with a bibliometric reference. The Web of Science core collection database was retrieved for coronavirus articles published from 1 January 2000 to 17 March 2020. Duplicates and discrete papers were excluded. Analysis parameters including time, regions, impact factors, and citation times were processed through professional software. A total of 9043 coronavirus articles originated from 123 countries and were published in 1202 journals. The USA contributed most articles (3101) followed by China (2230). The research was published in specialized journals including the Journal of Virology. Universities were the main institutions of science progress. High-impact articles covered fields of basic science and clinical medicine. There were two sharp increases in research yields after the severe acute respiratory syndrome (SARS) and the Middle East respiratory syndrome (MERS) outbreaks. -
Global Research Productivity on Coronavirus: a Bibliometric Mapping and Visualization
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Library Philosophy and Practice (e-journal) Libraries at University of Nebraska-Lincoln Winter 4-1-2020 Global Research Productivity on Coronavirus: A Bibliometric Mapping and Visualization Vijay Kumar Bharati Mahatma Gandhi Kashi Vidyapith ,Varanasi UP,India, [email protected] Mahender Pratap Singh Babasaheb Bhimrao Ambedkar University(A central University),Lucknow,UP,India, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/libphilprac Part of the Library and Information Science Commons Bharati, Vijay Kumar and Singh, Mahender Pratap, "Global Research Productivity on Coronavirus: A Bibliometric Mapping and Visualization" (2020). Library Philosophy and Practice (e-journal). 4061. https://digitalcommons.unl.edu/libphilprac/4061 Global Research Productivity on Coronavirus: A Bibliometric Mapping and Visualization Vijay Kumar Bharati1 Prof. M. P. Singh2 Abstract Coronavirus, a pandemic threat to human beings, has awakened huge concern worldwide, but no bibliometric studies have been conducted on Coronavirus research during 2011-Feb.2020. The aim of this study is to map research productivity on the Coronavirus based on the articles indexed in the Scopus database. The articles related to Coronavirus dated from 2011 to Feb. 2020 were retrieved from the Scopus database. A total of 7558 papers were retrieved for this study which indexed by the Scopus database during 2010-Feb. 2020. The most productive year is recognized 2015with 1012 (13.38 %) articles while Maximum AGR 40.38 percent was recorded in the year. The USA ranked first with 2373 publications, followed by China with1378 publications while The Journal of Virology published the highest 330 articles followed by PLoS One with 224 articles. -
Specialissue
IMPACT FACTOR 5.048 an Open Access Journal by MDPI Virology in the Czech Republic – from a Great Legacy to Optimistic Future Guest Editor: Message from the Guest Editor Dr. Tomas Ruml Dear Colleagues, University of Chemistry and Technology Prague, Department We are currently experiencing one of the worst viral of Biochemistry and pandemics in recent history. The new coronavirus, SARS- Microbiology, Prague, Czech Republic CoV-2, has shown that we need to be prepared for new viral threats. This is true not only for emerging viruses but also [email protected] for those seemingly under control. Moreover, due to global warming, some viruses may migrate from tropical regions to areas with a continental climate. Therefore, it is Deadline for manuscript extremely important to exploit and interlink all possible submissions: resources and scientists worldwide in a battle against the 21 December 2021 (re)emerging threats posed by viruses. This Special Issue o f Viruses aims to introduce state-of-the-art virology research in the Czech Republic, which is a country that has left a noticeable trace in the field of virology. I look forward to receiving your submissions for this Special Issue. Prof. Tomas Ruml Guest Editor mdpi.com/si/57086 SpeciaIslsue IMPACT FACTOR 5.048 an Open Access Journal by MDPI Editor-in-Chief Message from the Editor-in-Chief Dr. Eric O. Freed Viruses (ISSN 1999-4915) is an open access journal which Director, HIV Dynamics and provides an advanced forum for studies of viruses. It Replication Program, Center for publishes reviews, regular research papers, Cancer Research, National Cancer Institute, Frederick, MD communications, conference reports and short notes. -
Open Access, Moving to the Fore Kuan-Teh Jeang*
Jeang Retrovirology 2012, 9:66 http://www.retrovirology.com/content/9/1/66 EDITORIAL Open Access Open access, moving to the fore Kuan-Teh Jeang* Abstract Nine years after its founding, Retrovirology has moved to the forefront of virology journals in Impact Factor. In 2004, during the early days of Open Access, I had the JAIDS, J Virol., Virology, J Gen Virology; and two estab- opportunity to start Retrovirology employing the then lished standards of molecular biology and biochemistry, “new way” of publishing [1]. Retrovirology was not the the Journal of Molecular Biology and the Journal of Bio- first journal that I helped found. Ten years earlier, in logical Chemistry (Figure 1). Of interest, amongst these 1994, I was one of nine editors, led by Dr. Chuan C. journals, Retrovirology is the only Open Access journal. Chang, who started the Journal of Biomedical Science This means that only in Retrovirology are your papers [2]. The Journal of Biomedical Science originated as a immediately available for all to read, the very day that subscription-based journal; thus, when Retrovirology they are published, in full text form without the readers began I understood the difference between a publishing being encumbered by subscription fees. This Open Ac- model based on subscription (readers/subscribing librar- cess feature may explain the large advantage in Immedi- ies and institutions pay) versus Open Access (authors acy Index for papers published in Retrovirology over the pay, and all articles are freely accessible by readers). next-ranked journal, the Journal of Infectious Diseases At the outset, there were two challenges to Retrovirol- (Figure 1).