Low Proline Diet in Type I Hyperprolinaemia
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Al Exposure Increases Proline Levels by Different Pathways in An
www.nature.com/scientificreports OPEN Al exposure increases proline levels by diferent pathways in an Al‑sensitive and an Al‑tolerant rye genotype Alexandra de Sousa1,2, Hamada AbdElgawad2,4, Fernanda Fidalgo1, Jorge Teixeira1, Manuela Matos3, Badreldin A. Hamed4, Samy Selim5, Wael N. Hozzein6, Gerrit T. S. Beemster2 & Han Asard2* Aluminium (Al) toxicity limits crop productivity, particularly at low soil pH. Proline (Pro) plays a role in protecting plants against various abiotic stresses. Using the relatively Al‑tolerant cereal rye (Secale cereale L.), we evaluated Pro metabolism in roots and shoots of two genotypes difering in Al tolerance, var. RioDeva (sensitive) and var. Beira (tolerant). Most enzyme activities and metabolites of Pro biosynthesis were analysed. Al induced increases in Pro levels in each genotype, but the mechanisms were diferent and were also diferent between roots and shoots. The Al‑tolerant genotype accumulated highest Pro levels and this stronger increase was ascribed to simultaneous activation of the ornithine (Orn)‑biosynthetic pathway and decrease in Pro oxidation. The Orn pathway was particularly enhanced in roots. Nitrate reductase (NR) activity, N levels, and N/C ratios demonstrate that N‑metabolism is less inhibited in the Al‑tolerant line. The correlation between Pro changes and diferences in Al‑sensitivity between these two genotypes, supports a role for Pro in Al tolerance. Our results suggest that diferential responses in Pro biosynthesis may be linked to N‑availability. Understanding the role of Pro in diferences between genotypes in stress responses, could be valuable in plant selection and breeding for Al resistance. Proline (Pro) is involved in a wide range of plant physiological and developmental processes1. -
The Janus-Like Role of Proline Metabolism in Cancer Lynsey Burke1,Innaguterman1, Raquel Palacios Gallego1, Robert G
Burke et al. Cell Death Discovery (2020) 6:104 https://doi.org/10.1038/s41420-020-00341-8 Cell Death Discovery REVIEW ARTICLE Open Access The Janus-like role of proline metabolism in cancer Lynsey Burke1,InnaGuterman1, Raquel Palacios Gallego1, Robert G. Britton1, Daniel Burschowsky2, Cristina Tufarelli1 and Alessandro Rufini1 Abstract The metabolism of the non-essential amino acid L-proline is emerging as a key pathway in the metabolic rewiring that sustains cancer cells proliferation, survival and metastatic spread. Pyrroline-5-carboxylate reductase (PYCR) and proline dehydrogenase (PRODH) enzymes, which catalyze the last step in proline biosynthesis and the first step of its catabolism, respectively, have been extensively associated with the progression of several malignancies, and have been exposed as potential targets for anticancer drug development. As investigations into the links between proline metabolism and cancer accumulate, the complexity, and sometimes contradictory nature of this interaction emerge. It is clear that the role of proline metabolism enzymes in cancer depends on tumor type, with different cancers and cancer-related phenotypes displaying different dependencies on these enzymes. Unexpectedly, the outcome of rewiring proline metabolism also differs between conditions of nutrient and oxygen limitation. Here, we provide a comprehensive review of proline metabolism in cancer; we collate the experimental evidence that links proline metabolism with the different aspects of cancer progression and critically discuss the potential mechanisms involved. ● How is the rewiring of proline metabolism regulated Facts depending on cancer type and cancer subtype? 1234567890():,; 1234567890():,; 1234567890():,; 1234567890():,; ● Is it possible to develop successful pharmacological ● Proline metabolism is widely rewired during cancer inhibitor of proline metabolism enzymes for development. -
Amino Acid Disorders 105
AMINO ACID DISORDERS 105 Massaro, A. S. (1995). Trypanosomiasis. In Guide to Clinical tions in biological fluids relatively easy. These Neurology (J. P. Mohrand and J. C. Gautier, Eds.), pp. 663– analyzers separate amino acids either by ion-ex- 667. Churchill Livingstone, New York. Nussenzweig, V., Sonntag, R., Biancalana, A., et al. (1953). Ac¸a˜o change chromatography or by high-pressure liquid de corantes tri-fenil-metaˆnicos sobre o Trypanosoma cruzi in chromatography. The results are plotted as a graph vitro: Emprego da violeta de genciana na profilaxia da (Fig. 1). The concentration of each amino acid can transmissa˜o da mole´stia de chagas por transfusa˜o de sangue. then be calculated from the size of the corresponding O Hospital (Rio de Janeiro) 44, 731–744. peak on the graph. Pagano, M. A., Segura, M. J., DiLorenzo, G. A., et al. (1999). Cerebral tumor-like American trypanosomiasis in Most amino acid disorders can be diagnosed by acquired immunodeficiency syndrome. Ann. Neurol. 45, measuring the concentrations of amino acids in 403–406. blood plasma; however, some disorders of amino Rassi, A., Trancesi, J., and Tranchesi, B. (1982). Doenc¸ade acid transport are more easily recognized through the Chagas. In Doenc¸as Infecciosas e Parasita´rias (R. Veroesi, Ed.), analysis of urine amino acids. Therefore, screening 7th ed., pp. 674–712. Guanabara Koogan, Sa˜o Paulo, Brazil. Spina-Franc¸a, A., and Mattosinho-Franc¸a, L. C. (1988). for amino acid disorders is best done using both South American trypanosomiasis (Chagas’ disease). In blood and urine specimens. Occasionally, analysis of Handbook of Clinical Neurology (P. -
Yeast Genome Gazetteer P35-65
gazetteer Metabolism 35 tRNA modification mitochondrial transport amino-acid metabolism other tRNA-transcription activities vesicular transport (Golgi network, etc.) nitrogen and sulphur metabolism mRNA synthesis peroxisomal transport nucleotide metabolism mRNA processing (splicing) vacuolar transport phosphate metabolism mRNA processing (5’-end, 3’-end processing extracellular transport carbohydrate metabolism and mRNA degradation) cellular import lipid, fatty-acid and sterol metabolism other mRNA-transcription activities other intracellular-transport activities biosynthesis of vitamins, cofactors and RNA transport prosthetic groups other transcription activities Cellular organization and biogenesis 54 ionic homeostasis organization and biogenesis of cell wall and Protein synthesis 48 plasma membrane Energy 40 ribosomal proteins organization and biogenesis of glycolysis translation (initiation,elongation and cytoskeleton gluconeogenesis termination) organization and biogenesis of endoplasmic pentose-phosphate pathway translational control reticulum and Golgi tricarboxylic-acid pathway tRNA synthetases organization and biogenesis of chromosome respiration other protein-synthesis activities structure fermentation mitochondrial organization and biogenesis metabolism of energy reserves (glycogen Protein destination 49 peroxisomal organization and biogenesis and trehalose) protein folding and stabilization endosomal organization and biogenesis other energy-generation activities protein targeting, sorting and translocation vacuolar and lysosomal -
Amino Acid Disorders
471 Review Article on Inborn Errors of Metabolism Page 1 of 10 Amino acid disorders Ermal Aliu1, Shibani Kanungo2, Georgianne L. Arnold1 1Children’s Hospital of Pittsburgh, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA; 2Western Michigan University Homer Stryker MD School of Medicine, Kalamazoo, MI, USA Contributions: (I) Conception and design: S Kanungo, GL Arnold; (II) Administrative support: S Kanungo; (III) Provision of study materials or patients: None; (IV) Collection and assembly of data: E Aliu, GL Arnold; (V) Data analysis and interpretation: None; (VI) Manuscript writing: All authors; (VII) Final approval of manuscript: All authors. Correspondence to: Georgianne L. Arnold, MD. UPMC Children’s Hospital of Pittsburgh, 4401 Penn Avenue, Suite 1200, Pittsburgh, PA 15224, USA. Email: [email protected]. Abstract: Amino acids serve as key building blocks and as an energy source for cell repair, survival, regeneration and growth. Each amino acid has an amino group, a carboxylic acid, and a unique carbon structure. Human utilize 21 different amino acids; most of these can be synthesized endogenously, but 9 are “essential” in that they must be ingested in the diet. In addition to their role as building blocks of protein, amino acids are key energy source (ketogenic, glucogenic or both), are building blocks of Kreb’s (aka TCA) cycle intermediates and other metabolites, and recycled as needed. A metabolic defect in the metabolism of tyrosine (homogentisic acid oxidase deficiency) historically defined Archibald Garrod as key architect in linking biochemistry, genetics and medicine and creation of the term ‘Inborn Error of Metabolism’ (IEM). The key concept of a single gene defect leading to a single enzyme dysfunction, leading to “intoxication” with a precursor in the metabolic pathway was vital to linking genetics and metabolic disorders and developing screening and treatment approaches as described in other chapters in this issue. -
Proline Metabolism in Glucagon Treated Rats
PROLINE CATABOLISM IN LIVER by © Michael Roland Haslett A thesis submitted to the School of Graduate Studies in partial fulfilment of the requirements for the degree of Master of Science Department of Biochemistry Memorial University of Newfoundland and Labrador 2009 St. John's Newfoundland and Labrador, Canada Abstract The goal of this work was to localize one of the enzymes involved in proline oxidation, 111-pyrroline-5-carboxylate dehydrogenase (P5CDh) and to gain an understanding of the factors affecting proline catabolism in rat liver. In this regard we performed a systematic subcellular localization for P5CDh and studied proline catabolism in response to dietary protein and exogenous glucagon. Our results indicate that P5CDh is located solely in mitochondria in rat liver. With respect to factors affecting proline catabolism we observed that rats fed a diet containing excess protein (45% casein) display a 1.5 fold increase in activity of P5CDh and proline oxidase (PO), and a 40% increase in flux through the pathway resulting in complete oxidation of proline in isolated mitochondria. We also observed that rats administered exogenous glucagon exhibit a 2 fold increase in PO activity and a 1.5 fold increase in P5CDh activity, and a 2 fold increase in flux through the pathway resulting in complete oxidation of proline in 14 14 isolated mitochondria. C02 production from C-proline in the isolated nonrecirculating perfused rat liver was also elevated 2 fold in the glucagon treated rat. We also studied the transport of proline into isolated hepatocytes and observed a 1.5 fold increase in the transport of proline in rats given exogenous glucagon. -
Proline Oxidase Controls Proline, Glutamate, and Glutamine Cellular Concentrations in a U87 Glioblastoma Cell Line
RESEARCH ARTICLE Proline oxidase controls proline, glutamate, and glutamine cellular concentrations in a U87 glioblastoma cell line Pamela Cappelletti1,2*, Elena Tallarita1, Valentina Rabattoni1, Paola Campomenosi1,2, Silvia Sacchi1,2, Loredano Pollegioni1,2 1 Department of Biotechnology and Life Sciences, University of Insubria, Varese, Italy, 2 The Protein Factory Research Center, Politecnico of Milano and University of Insubria, Milano, Italy a1111111111 * [email protected] a1111111111 a1111111111 a1111111111 a1111111111 Abstract L-Proline is a multifunctional amino acid that plays an essential role in primary metabolism and physiological functions. Proline is oxidized to glutamate in the mitochondria and the FAD-containing enzyme proline oxidase (PO) catalyzes the first step in L-proline degrada- OPEN ACCESS tion pathway. Alterations in proline metabolism have been described in various human dis- Citation: Cappelletti P, Tallarita E, Rabattoni V, eases, such as hyperprolinemia type I, velo-cardio-facial syndrome/Di George syndrome, Campomenosi P, Sacchi S, Pollegioni L (2018) schizophrenia and cancer. In particular, the mutation giving rise to the substitution Leu441- Proline oxidase controls proline, glutamate, and glutamine cellular concentrations in a U87 Pro was identified in patients suffering of schizophrenia and hyperprolinemia type I. Here, glioblastoma cell line. PLoS ONE 13(4): e0196283. we report on the expression of wild-type and L441P variants of human PO in a U87 glioblas- https://doi.org/10.1371/journal.pone.0196283 toma human cell line in an attempt to assess their effect on glutamate metabolism. The sub- Editor: Suzie Chen, Rutgers University, UNITED cellular localization of the flavoenzyme is not altered in the L441P variant, for which specific STATES activity is halved compared to the wild-type PO. -
(12) Patent Application Publication (10) Pub. No.: US 2003/0082511 A1 Brown Et Al
US 20030082511A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2003/0082511 A1 Brown et al. (43) Pub. Date: May 1, 2003 (54) IDENTIFICATION OF MODULATORY Publication Classification MOLECULES USING INDUCIBLE PROMOTERS (51) Int. Cl." ............................... C12O 1/00; C12O 1/68 (52) U.S. Cl. ..................................................... 435/4; 435/6 (76) Inventors: Steven J. Brown, San Diego, CA (US); Damien J. Dunnington, San Diego, CA (US); Imran Clark, San Diego, CA (57) ABSTRACT (US) Correspondence Address: Methods for identifying an ion channel modulator, a target David B. Waller & Associates membrane receptor modulator molecule, and other modula 5677 Oberlin Drive tory molecules are disclosed, as well as cells and vectors for Suit 214 use in those methods. A polynucleotide encoding target is San Diego, CA 92121 (US) provided in a cell under control of an inducible promoter, and candidate modulatory molecules are contacted with the (21) Appl. No.: 09/965,201 cell after induction of the promoter to ascertain whether a change in a measurable physiological parameter occurs as a (22) Filed: Sep. 25, 2001 result of the candidate modulatory molecule. Patent Application Publication May 1, 2003 Sheet 1 of 8 US 2003/0082511 A1 KCNC1 cDNA F.G. 1 Patent Application Publication May 1, 2003 Sheet 2 of 8 US 2003/0082511 A1 49 - -9 G C EH H EH N t R M h so as se W M M MP N FIG.2 Patent Application Publication May 1, 2003 Sheet 3 of 8 US 2003/0082511 A1 FG. 3 Patent Application Publication May 1, 2003 Sheet 4 of 8 US 2003/0082511 A1 KCNC1 ITREXCHO KC 150 mM KC 2000000 so 100 mM induced Uninduced Steady state O 100 200 300 400 500 600 700 Time (seconds) FIG. -
Uva-DARE (Digital Academic Repository)
UvA-DARE (Digital Academic Repository) Implications of arginine deficiency for growth and organ maturation. Studies on hair, muscle, brain and lymphoid organ maturation de Jonge, W.J. Publication date 2001 Link to publication Citation for published version (APA): de Jonge, W. J. (2001). Implications of arginine deficiency for growth and organ maturation. Studies on hair, muscle, brain and lymphoid organ maturation. General rights It is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons). Disclaimer/Complaints regulations If you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, stating your reasons. In case of a legitimate complaint, the Library will make the material inaccessible and/or remove it from the website. Please Ask the Library: https://uba.uva.nl/en/contact, or a letter to: Library of the University of Amsterdam, Secretariat, Singel 425, 1012 WP Amsterdam, The Netherlands. You will be contacted as soon as possible. UvA-DARE is a service provided by the library of the University of Amsterdam (https://dare.uva.nl) Download date:05 Oct 2021 ChapterChapter I ArginineArginine biosynthesis and metabolism WouterWouter J de Jonge, Maaike J Bruins, 2Nicolaas E Deutz,2Peter B Soeters, 11 Wouter H hamers 'Departmentt of Anatomy and Embryology,3 Department of Biochemistry, Academicc Medical Center, Meibergdreef 15, 1105 AZ Amsterdam, department of Surgery,, Maastricht University (AZL), The Netherlands. -
Proline Dehydrogenase Is Essential for Proline Protection Against
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Biochemistry -- Faculty Publications Biochemistry, Department of 2012 Proline dehydrogenase is essential for proline protection against hydrogen peroxide induced cell death Sathish Kumar Natarajan University of Nebraska - Lincoln, [email protected] Weidong Zhu University of Nebraska-Lincoln Xinwen Liang University of Nebraska - Lincoln, [email protected] Lu Zhang University of Nebraska-Lincoln, [email protected] Andrew Demers University of Nebraska-Lincoln, [email protected] See next page for additional authors Follow this and additional works at: http://digitalcommons.unl.edu/biochemfacpub Part of the Biochemistry Commons, Biotechnology Commons, and the Other Biochemistry, Biophysics, and Structural Biology Commons Natarajan, Sathish Kumar; Zhu, Weidong; Liang, Xinwen; Zhang, Lu; Demers, Andrew; Zimmerman, Matthew C.; Simpson, Melanie A.; and Becker, Donald F., "Proline dehydrogenase is essential for proline protection against hydrogen peroxide induced cell death" (2012). Biochemistry -- Faculty Publications. 276. http://digitalcommons.unl.edu/biochemfacpub/276 This Article is brought to you for free and open access by the Biochemistry, Department of at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Biochemistry -- Faculty Publications by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Authors Sathish Kumar Natarajan, Weidong Zhu, Xinwen Liang, Lu Zhang, Andrew Demers, Matthew C. Zimmerman, Melanie A. Simpson, and Donald F. Becker This article is available at DigitalCommons@University of Nebraska - Lincoln: http://digitalcommons.unl.edu/biochemfacpub/276 NIH Public Access Author Manuscript Free Radic Biol Med. Author manuscript; available in PMC 2013 September 01. NIH-PA Author ManuscriptPublished NIH-PA Author Manuscript in final edited NIH-PA Author Manuscript form as: Free Radic Biol Med. -
Dr. Kiran Meena Department of Biochemistry Kiranmeena2104
Dr. Kiran Meena Department of Biochemistry [email protected] Class 7-8: 1-11-2018 (2:00 to 4:00 PM) Learning Objectives Catabolism of the Carbon Skeletons of amino acids and related disorders: • Catabolism of Phenylalanine and Tyrosine with genetic disorders • Arginine, Histidine, glutamate, glutamine and proline to α-ketoglutarate • Methionine, isoleucine, threonine and valine to Succinyl CoA • Degradation of branched chain aa (Leucine to Acetoacetate and Acetyl-CoA, Valine to β- Aminoisobutyrate and Succinyl-CoA and Isoleucine to Acetyl-CoA and Propionyl-CoA) • Asparagine and Aspartate to Oxaloacetate Conversion of amino acids to Specialized products Catabolism of Phenylalanine and Tyrosine with genetic disorders Homogentisate Oxidase/ Neonatal Tyrosinemia or Or p-hydroxyphenylpyruvate hydroxylase Fig18.23: Lehninger Principles of Biochemistry by David L Nelson Disorder related to phenylalanine catabolism Phenylketonuria (PKU) • Genetic defect in phenylalanine hydroxylase, first enzyme in catabolic pathway for phenylalanine, is responsible for disease phenylketonuria (PKU),most common cause of elevated levels of phenylalanine (hyperphenylalaninemia) • Excess phenylalanine is transaminated to Phenylpyruvate • The “spillover” of Phenylpyruvate (a phenylketone) into urine • High concentration of phenylalanine itself gives rise to brain dysfunction. Cont-- • Phenylalanine hydroxylase requires the cofactor tetrahydrobiopterin, which carries electrons from NADH to O2 and becomes oxidized to dihydrobiopterin • It is subsequently reduced -
The Microsomal Dicarboxylyl-Coa Synthetase
Biochem. J. (1985) 230, 683-693 683 Prinited in Great Britaini The microsomal dicarboxylyl-CoA synthetase Joseph VAMECQ,* Edmond DE HOFFMANNt and Francois VAN HOOF* *Laboratoire de Chimie Physiologique, Universite Catholique de Louvain and International Institute ofCellular and Molecular Pathology, UCL 75.39, 75 Avenue Hippocrate, B-1200 Brussels, Belgium, and tUnite de Cinetique, Combustion et Chimie Organique Physique, Universite Catholique de Louvain, Batiment Lavoisier, Place L. Pasteur 1, B-1348 Louvain-la-Neuve, Belgium (Received 11 March 1985/7 May 1985; accepted 30 May 1985) Dicarboxylic acids are products of the co-oxidation of monocarboxylic acids. We demonstrate that in rat liver dicarboxylic acids (C5-C1 6) can be converted into their CoA esters by a dicarboxylyl-CoA synthetase. During this activation ATP, which cannot be replaced by GTP, is converted into AMP and PP,, both acting as feedback inhibitors of the reaction. Thermolabile at 37°C, and optimally active at pH6.5, dicarboxylyl-CoA synthetase displays the highest activity on dodecanedioic acid (2yrmol/min per g of liver). Cell-fractionation studies indicate that this enzyme belongs to the hepatic microsomal fraction. Investigations about the fate of dicarboxylyl-CoA esters disclosed the existence of an oxidase, which could be measured by monitoring the production of H202. In our assay conditions this H202 production is dependent on and closely follows the CoA consumption. It appears that the chain-length specificity of the handling of dicarboxylic acids by this catabolic pathway (activation to acyl-CoA and oxidation with H202 production) parallels the pattern of the degradation of exogenous dicarboxylic acids in vivo.