Microbial Ecosystem Responses to Rapid Climate Change in the Arctic

Total Page:16

File Type:pdf, Size:1020Kb

Microbial Ecosystem Responses to Rapid Climate Change in the Arctic The ISME Journal (2010) 4, 1089–1091 & 2010 International Society for Microbial Ecology All rights reserved 1751-7362/10 www.nature.com/ismej COMMENTARY Microbial ecosystem responses to rapid climate change in the Arctic Warwick F Vincent The ISME Journal (2010) 4, 1089–1091; doi:10.1038/ The thickest multi-year sea ice occurs as land-fast ismej.2010.108; published online 15 July 2010 ice shelves along the northern coast of Ellesmere Island in high Arctic Canada. In addition to basal accretion by freezing of seawater, these also derive Rapid climate change in the Arctic has begun to part of their mass from snowfall, and in the case of affect the ecology of plants and animals throughout the Milne Ice Shelf, from glacier input. Abundant the region, with impacts on species ranges, popula- lakes and ponds melt out over the ice shelves each tion dynamics and food web interactions (Grebmeier summer and these contain bottom sediments and et al., 2006; Post et al., 2009). By comparison, little benthic microbial mats. The mats are consortia of attention has been given to the impacts on Arctic diverse Bacteria, Archaea and Eukarya (and asso- microbial communities, despite the major and often ciated viruses), but their main biomass constituents dominant contribution of microbes to total ecosys- are oscillatorian cyanobacteria, including genotypes tem biomass, biodiversity, nutrient cycling and that are 499% similar (in terms of 16S rRNA gene energy flow. Some Arctic microbial ecosystems sequences) to taxa previously thought to be endemic appear to be in rapid decline, whereas others are to Antarctica (Jungblut et al., 2010). The ice shelves shifting towards new states, with implications for are diminishing rapidly (Figure 1), and after millen- food webs and biogeochemical fluxes including nia of existence their unique microbial ecosystems greenhouse gas emissions. Given the accelerated are now facing imminent extinction (Vincent et al., rate of climate warming in the Arctic (Screen and 2009). Simmonds, 2010) and its potential effects on large- The high Arctic ice shelves dam bays and fiords to scale microbial processes (Kirchman et al., 2009; create ‘epishelf lakes’, an unusual ecosystem type Schuur et al., 2009), Arctic microbiota can be of freshwater overlying saltwater that is in tidal viewed both as sentinels and amplifiers of global exchange with the sea. The fracturing and break-up change. of ice shelves is causing the draining and loss of Ice forms the structural basis for many types of their fresh and brackish water microbial communi- microbial ecosystem in the polar regions; small ties. Epishelf lakes are well known from Antarctica, changes in temperature across the melting point can but after numerous losses over the last century, only therefore have pronounced impacts on polar habi- one such ecosystem is thought to remain in the High tats and communities (Vincent, 1988). Global warm- Arctic, and it is vulnerable to ongoing warming ing is causing a general attrition of the cryosphere, (Veillette et al., 2008). A different type of ice-dammed the ensemble of ice-containing environments on lagoon occurs at the mouth of Arctic rivers. These Earth. The continuous decline in annual sea ice is persist for 6–9 months each year behind thick reducing the growing season for microbial commu- barriers of rubble ice (stamukhi) that form in the nities that live in brine channels between the ice ice convergence zone, at the outer limit of land-fast crystals and in the water column at the edge of the sea ice. Studies on one such ecosystem at the mouth pack ice (marginal ice zone). In the Bering Sea of the Mackenzie River showed that it is an active region, these effects may account for decreased microbial ecosystem with distinct physical and organic carbon fluxes to the seafloor and the microbiological properties (Galand et al., 2008). observed reduction in benthic respiration rates Stamukhi lakes are found throughout the circum- (Grebmeier et al., 2006). Over the last decade, there polar region and most likely have a key functional has been a severe loss of multi-year sea ice, the role in processing riverine inputs to the Arctic 43-m thick ice formed by multiple years of Ocean. Given their dependence on ice dynamics, accumulation. Only 20 years ago, this ice type these systems will respond strongly to ongoing covered about 80% of the Arctic Ocean (time series climate change, with implications for the upstream details at http://seaice.apl.washington.edu/), but flooding and residence time of water over river little attention has been given to its microbial deltas, and for the transport of organic carbon and ecology. It can be expected that ongoing climate other terrigenous materials into the offshore ocean. change will lead to the disappearance of this and Melting sea ice combined with increasing fresh- other ice types, and their associated biota. water delivery from river inflows is affecting the Commentary 1090 Figure 1 Fracturing and attrition of the Ward Hunt Ice Shelf ecosystem, high Arctic Canada, August 2008 (details in Vincent et al., 2009). Elongate meltwater lakes form in the troughs of the undulating ice each summer, and these contain microbial mat consortia of diverse bacteria and microbial eukaryotes (photographs: WF Vincent). physical characteristics of the Arctic Ocean by thousands of years (Laurion et al., 2010; and causing reductions in the salinity of the surface references therein). The microbiota of permafrost mixed layer, which in turn results in greater soil is itself responding to warming and deepening hydrodynamic stability of the water column. These of the surface active layer. Gas flux studies have changes have been accompanied by increased shown that permafrost thaw can result in microbial bacterial concentrations, and also by a shift in CO2 production rates that exceed plant carbon phytoplankton size structure towards small microbial uptake, making permafrost a potentially large carbon eukaryotes, notably, cold-adapted picoprasino- source to the biosphere with ongoing climate change phytes (Li et al., 2009). The latter are likely to be (Schuur et al., 2009). more competitive and less subject to sinking losses As the Arctic continues to warm, psychrotrophs relative to larger phytoplankton in stratified, with their broad thermal tolerances are likely to nutrient-poor conditions. However, these small cells flourish at the expense of psychrophiles. Microbial are much less efficiently transferred within marine generalists invading from warmer latitudes will food webs and the resultant shifts may alter organic likely displace many of the resident specialists, carbon export to fish communities and to benthic and the retraction and loss of certain ice features ecosystems. Such effects could be exacerbated by such as perennial snow banks, multiyear sea ice, warmer temperatures that speed up respiration and land-fast ice, glaciers and ice shelves will further microbial loop processes. A warmer Arctic Ocean reduce the opportunities for niche specialization. may also be more susceptible to invasive species Arctic microbial ecosystems will retain their strong from the south, for example, the eventual replace- seasonality; however, there is likely to be greater ment of picoprasinophytes by picocyanobacteria, biodiversity reflecting invasions from the south, and modification of dinoflagellate assemblages by faster biogeochemical kinetics in a warmer environ- the arrival of harmful algal bloom species. Both of ment, increased extents of anaerobic and methane- these microbiological scenarios would most likely based ecosystems, and in some regions, greater net affect food quality, trophic processes and ecosystem production and emission of greenhouse gases. In the services such as fisheries and shellfish harvesting ocean, these changes will be compounded by the (a traditional Inuit practice). impacts of acidification and contaminants, and Arctic climate change is also influencing non- throughout the north polar region by increased marine microbial ecosystems. For example, northern human activities including shipping, mining, oil lakes are experiencing longer periods of open water drilling and urbanization. In the new state of the conditions, resulting in potentially greater primary Arctic, close attention will need to be paid to the production rates, but also disruption by wind- structure and functioning of its diverse microbial induced mixing of vertically stratified microbial ecosystems as global indicators and amplifiers of communities (Vincent et al., 2009). Erosion, warmer change. water temperatures and greater evaporation are causing a drying up of some Arctic freshwaters, but permafrost thawing in other regions is leading to the expansion of thermokarst lakes and ponds. Acknowledgements These microbiological hot spots on the tundra are I thank all members of our Arctic research group and the intense sites of microbial respiration and methano- International Polar Year program MERGE (details at http:// genesis, and have the potential to produce globally www.cen.ulaval.ca/merge/); Connie Lovejoy and two significant effluxes of greenhouse gases from soil anonymous referees for their constructive reviews; the organic carbon pools that have accumulated over Polar Continental Shelf Project and the Canadian Coast The ISME Journal Commentary 1091 Guard for logistics support; and the Natural Sciences and potential impact of climate change. Nature Rev Engineering Research Council, the Canada Research Chair Microbiol 7: 451–459. program,
Recommended publications
  • A Study on the Phototrophic Microbial Mat Communities of Sulphur Mountain Thermal Springs and Their Association with the Endangered, Endemic Snail Physella Johnsoni
    A Study on the Phototrophic Microbial Mat Communities of Sulphur Mountain Thermal Springs and their Association with the Endangered, Endemic Snail Physella johnsoni By Michael Bilyj A thesis submitted to the Faculty of Graduate Studies in partial fulfillment of the requirements for the degree of Master of Science Department of Microbiology Faculty of Science University of Manitoba Winnipeg, Manitoba October 2011 © Copyright 2011, Michael A. Bilyj 1 Abstract The seasonal population fluctuation of anoxygenic phototrophs and the diversity of cyanobacteria at the Sulphur Mountain thermal springs of Banff, Canada were investigated and compared to the drastic population changes of the endangered snail Physella johnsoni. A new species and two strains of Rhodomicrobium were taxonomically characterized in addition to new species of Rhodobacter and Erythromicrobium. Major mat-forming organisms included Thiothrix-like species, oxygenic phototrophs of genera Spirulina, Oscillatoria, and Phormidium and purple nonsulfur bacteria Rhodobacter, Rhodopseudomonas and Rhodomicrobium. Aerobic anoxygenic phototrophs comprised upwards of 9.6 x 104 CFU/cm2 of mat or 18.9% of total aerobic heterotrophic bacterial isolates at certain sites, while maximal purple nonsulfur and purple sulfur bacteria were quantified at 3.2 x 105 and 2.0 x 106 CFU/cm2 of mat, respectively. Photosynthetic activity measurements revealed incredibly productive carbon fixation rates averaging 40.5 mg C/cm2/24 h. A temporal mismatch was observed for mat area and prokaryote-based organics to P. johnsoni population flux in a ―tracking inertia‖ manner. 2 Acknowledgements It is difficult to express sufficient gratitude to my supervisor Dr. Vladimir Yurkov for his unfaltering patience, generosity and motivation throughout this entire degree.
    [Show full text]
  • Response of Marine Food Webs to Climate-Induced Changes in Temperature and Inflow of Allochthonous Organic Matter
    Response of marine food webs to climate-induced changes in temperature and inflow of allochthonous organic matter Rickard Degerman Department of Ecology and Environmental Science 901 87 Umeå Umeå 2015 1 Copyright©Rickard Degerman ISBN: 978-91-7601-266-6 Front cover illustration by Mats Minnhagen Printed by: KBC Service Center, Umeå University Umeå, Sweden 2015 2 Tillägnad Maria, Emma och Isak 3 Table of Contents Abstract 5 List of papers 6 Introduction 7 Aquatic food webs – different pathways Food web efficiency – a measure of ecosystem function Top predators cause cascade effects on lower trophic levels The Baltic Sea – a semi-enclosed sea exposed to multiple stressors Varying food web structures Climate-induced changes in the marine ecosystem Food web responses to increased temperature Responses to inputs of allochthonous organic matter Objectives 14 Material and Methods 14 Paper I Paper II and III Paper IV Results and Discussion 18 Effect of temperature and nutrient availability on heterotrophic bacteria Influence of food web length and labile DOC on pelagic productivity and FWE Consequences of changes in inputs of ADOM and temperature for pelagic productivity and FWE Control of pelagic productivity, FWE and ecosystem trophic balance by colored DOC Conclusion and future perspectives 21 Author contributions 23 Acknowledgements 23 Thanks 24 References 25 4 Abstract Global records of temperature show a warming trend both in the atmosphere and in the oceans. Current climate change scenarios indicate that global temperature will continue to increase in the future. The effects will however be very different in different geographic regions. In northern Europe precipitation is projected to increase along with temperature.
    [Show full text]
  • Thermophilic Lithotrophy and Phototrophy in an Intertidal, Iron-Rich, Geothermal Spring 2 3 Lewis M
    bioRxiv preprint doi: https://doi.org/10.1101/428698; this version posted September 27, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Thermophilic Lithotrophy and Phototrophy in an Intertidal, Iron-rich, Geothermal Spring 2 3 Lewis M. Ward1,2,3*, Airi Idei4, Mayuko Nakagawa2,5, Yuichiro Ueno2,5,6, Woodward W. 4 Fischer3, Shawn E. McGlynn2* 5 6 1. Department of Earth and Planetary Sciences, Harvard University, Cambridge, MA 02138 USA 7 2. Earth-Life Science Institute, Tokyo Institute of Technology, Meguro, Tokyo, 152-8550, Japan 8 3. Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 9 91125 USA 10 4. Department of Biological Sciences, Tokyo Metropolitan University, Hachioji, Tokyo 192-0397, 11 Japan 12 5. Department of Earth and Planetary Sciences, Tokyo Institute of Technology, Meguro, Tokyo, 13 152-8551, Japan 14 6. Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth 15 Science and Technology, Natsushima-cho, Yokosuka 237-0061, Japan 16 Correspondence: [email protected] or [email protected] 17 18 Abstract 19 Hydrothermal systems, including terrestrial hot springs, contain diverse and systematic 20 arrays of geochemical conditions that vary over short spatial scales due to progressive interaction 21 between the reducing hydrothermal fluids, the oxygenated atmosphere, and in some cases 22 seawater. At Jinata Onsen, on Shikinejima Island, Japan, an intertidal, anoxic, iron- and 23 hydrogen-rich hot spring mixes with the oxygenated atmosphere and sulfate-rich seawater over 24 short spatial scales, creating an enormous range of redox environments over a distance ~10 m.
    [Show full text]
  • Microbial Loop' in Stratified Systems
    MARINE ECOLOGY PROGRESS SERIES Vol. 59: 1-17, 1990 Published January 11 Mar. Ecol. Prog. Ser. 1 A steady-state analysis of the 'microbial loop' in stratified systems Arnold H. Taylor, Ian Joint Plymouth Marine Laboratory, Prospect Place, West Hoe, Plymouth PLl 3DH, United Kingdom ABSTRACT. Steady state solutions are presented for a simple model of the surface mixed layer, which contains the components of the 'microbial loop', namely phytoplankton, picophytoplankton, bacterio- plankton, microzooplankton, dissolved organic carbon, detritus, nitrate and ammonia. This system is assumed to be in equilibrium with the larger grazers present at any time, which are represented as an external mortality function. The model also allows for dissolved organic nitrogen consumption by bacteria, and self-grazing and mixotrophy of the microzooplankton. The model steady states are always stable. The solution shows a number of general properties; for example, biomass of each individual component depends only on total nitrogen concentration below the mixed layer, not whether the nitrogen is in the form of nitrate or ammonia. Standing stocks and production rates from the model are compared with summer observations from the Celtic Sea and Porcupine Sea Bight. The agreement is good and suggests that the system is often not far from equilibrium. A sensitivity analysis of the model is included. The effect of varying the mixing across the pycnocline is investigated; more intense mixing results in the large phytoplankton population increasing at the expense of picophytoplankton, micro- zooplankton and DOC. The change from phytoplankton to picophytoplankton dominance at low mixing occurs even though the same physiological parameters are used for both size fractions.
    [Show full text]
  • The Vulnerability of Microbial Ecosystems in a Changing Climate: Potential Impact in Shark Bay
    life Review The Vulnerability of Microbial Ecosystems in a Changing Climate: Potential Impact in Shark Bay Max Reinold 1,2, Hon Lun Wong 1,2, Fraser I. MacLeod 1,2, Julia Meltzer 1,2, April Thompson 1,2 and Brendan P. Burns 1,2,* 1 School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney 2052, Australia 2 Australian Centre for Astrobiology, The University of New South Wales, Sydney 2052, Australia * Correspondence: [email protected]; Tel.: +612-9385-3659; Fax: +612-9385-1591 Received: 30 July 2019; Accepted: 28 August 2019; Published: 2 September 2019 Abstract: The potential impact of climate change on eukaryotes, including humans, has been relatively well described. In contrast, the contribution and susceptibility of microorganisms to a changing climate have, until recently, received relatively less attention. In this review, the importance of microorganisms in the climate change discourse is highlighted. Microorganisms are responsible for approximately half of all primary production on earth, support all forms of macroscopic life whether directly or indirectly, and often persist in “extreme” environments where most other life are excluded. In short, microorganisms are the life support system of the biosphere and therefore must be included in decision making regarding climate change. Any effects climate change will have on microorganisms will inevitably impact higher eukaryotes and the activity of microbial communities in turn can contribute to or alleviate the severity of the changing climate. It is of vital importance that unique, fragile, microbial ecosystems are a focus of research efforts so that their resilience to extreme weather events and climate change are thoroughly understood and that conservation efforts can be implemented as a response.
    [Show full text]
  • Developments in Aquatic Microbiology
    INTERNATL MICROBIOL (2000) 3: 203–211 203 © Springer-Verlag Ibérica 2000 REVIEW ARTICLE Samuel P. Meyers Developments in aquatic Department of Oceanography and Coastal Sciences, Louisiana State University, microbiology Baton Rouge, LA, USA Received 30 August 2000 Accepted 29 September 2000 Summary Major discoveries in marine microbiology over the past 4-5 decades have resulted in the recognition of bacteria as a major biomass component of marine food webs. Such discoveries include chemosynthetic activities in deep-ocean ecosystems, survival processes in oligotrophic waters, and the role of microorganisms in food webs coupled with symbiotic relationships and energy flow. Many discoveries can be attributed to innovative methodologies, including radioisotopes, immunofluores- cent-epifluorescent analysis, and flow cytometry. The latter has shown the key role of marine viruses in marine system energetics. Studies of the components of the “microbial loop” have shown the significance of various phagotrophic processes involved in grazing by microinvertebrates. Microbial activities and dissolved organic carbon are closely coupled with the dynamics of fluctuating water masses. New biotechnological approaches and the use of molecular biology techniques still provide new and relevant information on the role of microorganisms in oceanic and estuarine environments. International interdisciplinary studies have explored ecological aspects of marine microorganisms and their significance in biocomplexity. Studies on the Correspondence to: origins of both life and ecosystems now focus on microbiological processes in the Louisiana State University Station. marine environment. This paper describes earlier and recent discoveries in marine Post Office Box 19090-A. Baton Rouge, LA 70893. USA (aquatic) microbiology and the trends for future work, emphasizing improvements Tel.: +1-225-3885180 in methodology as major catalysts for the progress of this broadly-based field.
    [Show full text]
  • Controls and Structure of the Microbial Loop
    Controls and Structure of the Microbial Loop A symposium organized by the Microbial Oceanography summer course sponsored by the Agouron Foundation Saturday, July 1, 2006 Asia Room, East-West Center, University of Hawaii Symposium Speakers: Peter J. leB Williams (University of Bangor, Wales) David L. Kirchman (University of Delaware) Daniel J. Repeta (Woods Hole Oceanographic Institute) Grieg Steward (University of Hawaii) The oceans constitute the largest ecosystems on the planet, comprising more than 70% of the surface area and nearly 99% of the livable space on Earth. Life in the oceans is dominated by microbes; these small, singled-celled organisms constitute the base of the marine food web and catalyze the transformation of energy and matter in the sea. The microbial loop describes the dynamics of microbial food webs, with bacteria consuming non-living organic matter and converting this energy and matter into living biomass. Consumption of bacteria by predation recycles organic matter back into the marine food web. The speakers of this symposium will explore the processes that control the structure and functioning of microbial food webs and address some of these fundamental questions: What aspects of microbial activity do we need to measure to constrain energy and material flow into and out of the microbial loop? Are we able to measure bacterioplankton dynamics (biomass, growth, production, respiration) well enough to edu/agouroninstitutecourse understand the contribution of the microbial loop to marine systems? What factors control the flow of material and energy into and out of the microbial loop? At what scales (space and time) do we need to measure processes controlling the growth and metabolism of microorganisms? How does our knowledge of microbial community structure and diversity influence our understanding of the function of the microbial loop? Program: 9:00 am Welcome and Introductory Remarks followed by: Peter J.
    [Show full text]
  • The Mysterious Microbial Mats
    Submarine Ring of Fire 2012: NE Lau Basin Expedition The Mysterious Microbial Mats Focus Ecological role of microbial mats in hydrothermal vent ecosystems Grade Level 5-6 (Life Science) Focus Question What is the role of microbial mats in hydrothermal vent ecosystems? Learning Objectives n Students will plan an investigation using a model ecosystem to explain some of the components of an anaerobic ecosystem. n Students will construct explanations for the potential role of microbial mats in hydrothermal vent ecosystems. Materials For each student group: q Directions for setting up Winogradsky columns from http:// quest.arc.nasa.gov/projects/astrobiology/fieldwork/lessons/ Winogradsky_5_8.pdf q Two 2-liter plastic soda bottles q Black mud from a local river, lake, or estuary, approximately 2.5 l q 2.5 l of water from each mud/sand location used q 1 small bucket q 250 ml graduated cylinder or 1 cup measure q 1 paint stirrer or large spoon q 1 sheet of newspaper q 1 tablespoon powdered chalk q One hard boiled egg yolk or one tablespoon calcium sulfate q 1 set measuring spoons q Aluminum foil or plastic wrap and rubber band q Masking tape and markers for labeling columns q (Optional) Pencil sharpener for crushing chalk q (Optional) Mortar and pestle for making egg yolk powder q (Optional) 1 lamp with 40- to 60-watt light bulb q (Optional) Microscopes and materials for making wet mounts Image captions/credits on Page 2. Audio-Visual Materials q (Optional) Interactive whiteboard 1 www.oceanexplorer.noaa.gov Submarine Ring of Fire 2012: NE Lau
    [Show full text]
  • “How to Make a Microbial Mat”
    Science Lesson Plan: How to Make a Microbial Mat Brad Bebout, Allison Pfeifer, Erich Fleming, Adrienne Frisbee, Jan Winter NASA Ames Research Center Background Microbes have shaped the atmosphere and climate of Earth over geologic time. Microbes may be important in the search for life both within our solar system and on extrasolar planets. Some of the earliest and most widespread evidence of life on Earth were in the form of microbial mats. Microbial mats are complex, usually layered collections of microorganisms that can be observed in a number of aquatic ecosystems. They are complete ecosystems in miniature. In this activity, students create living versions of the microbial mats that have existed on earth for 3.5 billion years. Living microbial mats constructed in plastic boxes. Main Concepts Photosynthetic microbial mats are complex ecosystems that generally exhibit vertical gradients in light, and chemical compounds. These gradients are established by photosynthesis at the top of the mat and control the functioning of the intact ecosystem. Scientific Question What factors contribute to the vertical structure of microbial mats in the field? Objectives 1. The students will create their own microbial mat. 2. The microbial mat will be available for later experimentation and/or observation. Abstract of Lesson Microbial mats are defined as layered communities of microorganisms that are only a few millimeters thick. Many biogeochemical processes are conducted by the organisms in the mat to sustain life. For example, the mats perform photosynthesis, and respiration, and can acquire nitrogen through the process of nitrogen fixation. The mat community is a fully functioning ecosystem containing both producers and consumers or organic carbon.
    [Show full text]
  • Microbial Lithification in Marine Stromatolites and Hypersaline Mats
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by RERO DOC Digital Library Published in Trends in Microbiology 13,9 : 429-438, 2005, 1 which should be used for any reference to this work Microbial lithification in marine stromatolites and hypersaline mats Christophe Dupraz1 and Pieter T. Visscher2 1Institut de Ge´ ologie, Universite´ de Neuchaˆ tel, Rue Emile-Argand 11, CP 2, CH-2007 Neuchaˆ tel, Switzerland 2Center for Integrative Geosciences, Department of Marine Sciences, University of Connecticut, 1080 Shennecossett Road, Groton, Connecticut, 06340, USA Lithification in microbial ecosystems occurs when pre- crucial role in regulating sedimentation and global bio- cipitation of minerals outweighs dissolution. Although geochemical cycles. the formation of various minerals can result from After the decline of stromatolites in the late Proterozoic microbial metabolism, carbonate precipitation is pos- (ca. 543 million years before present), microbially induced sibly the most important process that impacts global and/or controlled precipitation continued throughout the carbon cycling. Recent investigations have produced geological record as an active and essential player in most models for stromatolite formation in open marine aquatic ecosystems [9,10]. Although less abundant than in environments and lithification in shallow hypersaline the Precambrian, microbial precipitation is observed in a lakes, which could be highly relevant for interpreting the multitude of semi-confined (physically or chemically)
    [Show full text]
  • 01 Delong 2-8 6/9/05 8:58 AM Page 2
    01 Delong 2-8 6/9/05 8:58 AM Page 2 INSIGHT REVIEW NATURE|Vol 437|15 September 2005|doi:10.1038/nature04157 Genomic perspectives in microbial oceanography Edward F. DeLong1 and David M. Karl2 The global ocean is an integrated living system where energy and matter transformations are governed by interdependent physical, chemical and biotic processes. Although the fundamentals of ocean physics and chemistry are well established, comprehensive approaches to describing and interpreting oceanic microbial diversity and processes are only now emerging. In particular, the application of genomics to problems in microbial oceanography is significantly expanding our understanding of marine microbial evolution, metabolism and ecology. Integration of these new genome-enabled insights into the broader framework of ocean science represents one of the great contemporary challenges for microbial oceanographers. Marine ecosystems are complex and dynamic. A mechanistic under- greatly aid in these efforts. The correlation between organism- and habi- standing of the susceptibility of marine ecosystems to global environ- tat-specific genomic features and other physical, chemical and biotic mental variability and climate change driven by greenhouse gases will variables has the potential to refine our understanding of microbial and require a comprehensive description of several factors. These include biogeochemical process in ocean systems. marine physical, chemical and biological interactions including All these advances — improved cultivation, environmental genomic thresholds, negative and positive feedback mechanisms and other approaches and in situ microbial observatories — promise to enhance nonlinear interactions. The fluxes of matter and energy, and the our understanding of the living ocean system. Below, we provide a brief microbes that mediate them, are of central importance in the ocean, recent history of marine microbiology and outline some of the recent yet remain poorly understood.
    [Show full text]
  • Microbial Loop Carbon Cycling in Ocean Environments Studied Using a Simple Steady-State Model
    AQUATIC MICROBIAL ECOLOGY Vol. 26: 37–49, 2001 Published October 26 Aquat Microb Ecol Microbial loop carbon cycling in ocean environments studied using a simple steady-state model Thomas R. Anderson1,*, Hugh W. Ducklow2 1Southampton Oceanography Centre, Waterfront Campus, European Way, Southampton SO14 3ZH, United Kingdom 2College of William and Mary School of Marine Science, Rte 1208, Box 1346, Gloucester Point, Virginia 23062, USA ABSTRACT: A simple steady-state model is used to examine the microbial loop as a pathway for organic C in marine systems, constrained by observed estimates of bacterial to primary production ratio (BP:PP) and bacterial growth efficiency (BGE). Carbon sources (primary production including extracellular release of dissolved organic carbon, DOC), cycling via zooplankton grazing and viral lysis, and sinks (bacterial and zooplankton respiration) are represented. Model solutions indicate that, at least under near steady-state conditions, recent estimates of BP:PP of about 0.1 to 0.15 are consistent with reasonable scenarios of C cycling (low BGE and phytoplankton extracellular release) at open ocean sites such as the Sargasso Sea and subarctic North Pacific. The finding that bacteria are a major (50%) sink for primary production is shown to be consistent with the best estimates of BGE and dissolved organic matter (DOM) production by zooplankton and phytoplankton. Zooplank- ton-related processes are predicted to provide the greatest supply of DOC for bacterial consumption. The bacterial contribution to C flow in the microbial loop, via bacterivory and viral lysis, is generally low, as a consequence of low BGE. Both BP and BGE are hard to quantify accurately.
    [Show full text]