Complete Dissertation

VU Research Portal Environmental forcing of aquatic ecosystem variability Grötsch, P.M.M. 2018 document version Publisher's PDF, also known as Version of record Link to publication in VU Research Portal citation for published version (APA) Grötsch, P. M. M. (2018). Environmental forcing of aquatic ecosystem variability: A matter of perspective. General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal ? Take down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. E-mail address: [email protected] Download date: 23. Sep. 2021 ENVIRONMENTAL FORCING OF AQUATIC ECOSYSTEM VARIABILITY A MATTER OF PERSPECTIVE PHILIPP M. M. GRÖTSCH Thesis Committee: Prof. dr. van der Werf, G. R., Vrije Universiteit Amsterdam Prof. dr. Aerts, J. C. J. H., Vrije Universiteit Amsterdam Prof. dr. Salama, M. S., Universiteit Twente dr. Pitarch, J., Koninklijk Nederlands Instituut voor Onderzoek der Zee Prof. dr. Bracher, A., Universiteit Bremen Philipp M. M. Grötsch Environmental forcing of aquatic ecosystem variability – A matter of perspective PhD thesis, VU University Amsterdam, the Netherlands (2018) 176 pages ISBN 000-00-0000-000-0 Cover: Cyanobacterial bloom patterns in the Baltic Sea, captured on August 11 2015 by the Operational Land Imager (OLI) on Landsat 8. The image was digitally enhanced. For further information, please refer to the caption of Figure 1.1. Source: NASA Earth Observatory. The research on which this thesis is based was primarily carried out at the Institute for Environmental Studies, VU University, Amsterdam, The Netherlands, with funding allo- cated by WaterInsight, Wageningen, The Netherlands. A 1.5-year exchange with Tartu Observatory, Estonia, was funded within the framework of WaterS, an EU FP7 Marie Curie IAPP project. Both WaterInsight and WaterS are gratefully acknowledged. VRIJE UNIVERSITEIT ENVIRONMENTAL FORCING OF AQUATIC ECOSYSTEM VARIABILITY A MATTER OF PERSPECTIVE ACADEMISCH PROEFSCHRIFT ter verkrijging van de graad Doctor aan de Vrije Universiteit Amsterdam, op gezag van de rector magnificus prof.dr. V. Subramaniam, in het openbaar te verdedigen ten overstaan van de promotiecommissie van de Faculteit der Bètawetenschappen op woensdag 13 juni 2018 om 13.45 uur in de aula van de universiteit, De Boelelaan 1105 door Philipp Michael Maximilian GRÖTSCH geboren te München, Duitsland promotor: prof.dr.ir. P.H. Verburg copromotoren: dr. S.G.H. Simis dr. M.A. Eleveld Für Sabine und Tomi CONTENTS 1 General Introduction1 2 Introduction to Water Colour 11 3 Spectrally resolved Glint Correction 21 4 Spatial Distribution of Adjacency Effects 49 5 Meteorological Forcing of Summer Bloom 61 6 Cyanobacterial Bloom Detection 75 7 Spring Bloom Phenology 97 8 Synthesis 123 Bibliography 133 List of Publications 157 Summary 159 Curriculum Vitæ 163 Acknowledgements 165 vii 1 GENERAL INTRODUCTION Over two-thirds of our planet is covered by water. Oceans, coastal seas, and inland water bodies remain to be the least explored areas on Earth, despite serving as a primary driver for our climate and hosting the aquatic ecosystem. Both aspects are essential to main- taining life on this planet, including that of a growing human population (Platt et al., 2008). Aquatic biota use and transform resources allotted by physical and chemical processes. Investigating the intricacies of aquatic ecosystems has fuelled multi-disciplinary scientific efforts for centuries. In times of climate change and increasing anthro- pogenic pressure, a comprehensive understanding of these complex biogeochemical interactions is prerequisite to sustainable stewardship of oceans and lakes (Platt et al., 2008). However, only for the last several decades scientists could resort to the wealth of observations resulting from operational use of satellite remote sensing and in situ monitoring networks (Gregg, 2007). Abundance of observations, along with advances in computational resources and storage capacity, enabled large-scale analysis of variability in relevant ecosystem status indicators and external driving factors (Gregg, 2007). How- ever, each measurement methodology offers a distinct perspective on the ecosystem, both above and below the water surface, and on specific temporal and spatial scales (Dickey, 2003). Exploiting these unique perceptions of the ecosystem in a corroborative interpre- tation empowers significant advancement in system knowledge (Racault et al., 2014a). 1 2 1.G ENERAL INTRODUCTION This approach is at the core of this thesis, and is reflected in the research questions for- 1 mulated towards the end of this chapter. First, a brief introduction is given to aquatic ecosystem variability and the optical monitoring approaches that are equipped to re- solving it. 1.1.E NVIRONMENTAL FORCING OF AQUATIC ECOSYSTEMS Our understanding of physical, chemical, and biological processes in the water column relies crucially on the analysis of variability inherent to the aquatic ecosystem and its external driving forces. Environmental physical forcing induces variability on all temporal and spatial scales to the aquatic ecosystem. The underwater light field, for example, is subject to intensity variations on the order of milliseconds caused by wave facets on the water surface (Gege and Pinnel, 2011). Light availability is further modulated by diurnal and seasonal sun elevation cycles, varying cloud cover and atmospheric com- position, and changing water constituent concentrations (Kirk, 1994; Stramska, 1998). Air temperature gradients and wind-forced mixing are other aspects of the weather that affect ecosystem variability, i.e. by contributing to ocean currents that transport nutri- ents both horizontally and vertically. These processes also act on scales as small as the semi-enclosed brackish Baltic Sea: cyanobacterial surface bloom amplifies heat dissipa- tion rates (Kahru et al., 1993) and is likely to become more abundant with anticipated changes in climate and rising eutrophication (O’Neil et al., 2012). Since global ocean heat content is an essential parameter in climate models (Domingues et al., 2008), it is important to quantify the mutual effects between long-term trends in environmental conditions and corresponding assimilation processes of the ecosystem (Mora et al., 2013). In the context of this thesis, phytoplankton variability is studied as a proxy for aquatic ecosystem variability. Short-term variations and long-term trends in meteorological conditions, hydrodynamics, and nutrient availability can trigger complex acclimatisation processes in these organisms that cause variability in both phytoplankton abundance and appearance (Boyce et al., 2010; Kraemer et al., 2017; Paerl and Huisman, 2008). Since phytoplankton form the base of the aquatic food web, variability in their abundance propagates through the ecosystem. Phytoplankton cells can ad- just their photosynthetic machinery to the available light, including photoprotective mechanisms to prevent damage from excess radiation (Krause et al., 1982; Mueller et al., 2001). Diurnal (and longer) migration cycles are practised by certain cyanobacterial and algal species, e.g. through regulation of their buoyancy to alternate between phases of nutrient uptake at depth, and photosynthesis close to the water surface (Lips and Lips, 1.1.E NVIRONMENTAL FORCING OF AQUATIC ECOSYSTEMS 3 1 Figure 1.1: Cyanobacterial bloom patterns at different spatial scales in the Baltic Sea, captured on August 11 2015 by the Operational Land Imager (OLI) on Landsat 8. Translu- cent areas in the top image indicate the extent of the bottom panels. At the highest zoom level (bottom right), a ferry can be discerned that passed through the bloom and caused vertical mixing along its track. Source: NASA Earth Observatory. 4 1.G ENERAL INTRODUCTION 2013). Active buoyancy control (Sengupta et al., 2017; Stal et al., 2003) can give these 1 species a competitive advantage over other species of phytoplankton in nutrient replete conditions, i.e. after deep mixing events (Walsby et al., 1997). Subsequent prevailing calm and warm conditions can lead to intense cyanobacterial surface blooms (Bresciani et al., 2013; Lips and Lips, 2008; Wynne et al., 2010, 2013) with highly variable vertical distributions (Hajdu et al., 2007). These potentially toxic (Hansson and Håkansson, 2007; Paerl et al., 2009) harmful-algal-blooms (HABs) can negatively affect economy, ecology, and public health (Anderson, 1997; Anderson et al., 2002; Paerl and Huisman, 2008; Sellner et al., 2003). In the eutrophic Baltic Sea, for example, cyanobacterial surface blooms form every summer during periods of favourable meteorological conditions (Kahru and Elmgren, 2014), e.g. low-wind and high radiation. Such spatially highly variable cyanobacterial surface blooms are readily detectable in situ and from space (see Figure 1.1). Stratification in euphotic surface layers complicates accurate assessment

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