Biohackers : the Politics of Open Science
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23 Pairs in Humans That Contain Our Genes Genome: Your Entire DNA DNA: Deoxyribonucleic Acid; Contains 4 Base Pairs -Adenine, Thymine, Guanine, Cytosine
Handout for June 20, 2020 Skagit Valley Genealogical Society DNA and Genealogy Definitions Chromosomes: 23 pairs in humans that contain our genes Genome: Your entire DNA DNA: Deoxyribonucleic Acid; contains 4 base pairs -Adenine, Thymine, Guanine, Cytosine. In various combinations these determine your genome Mitochondria DNA (mtDNA): The bodies in a cell but outside the nucleus. They provide the energy for cells to do their work. They contain some DNA. Y-Chromosome: in males only X-Chromosome: Women have two of these; men only have one in combination with a Y-Chromosome MRCA: Most Recent Common Ancestor that you share with a match Centi-Morgans (cM): a centiMorgan is a measurement of how likely a segment of DNA is to recombine from one generation to the next. The important thing to remember: The larger the number of shared cMs, the closer the relationship to a DNA match. DNA Testing Sites Ancestry.com Autosomal testing only 23andme.com Autosomal only FamilyTreeDNA.com Y-DNA, mtDNA and Autosomal MyHeritage.com Autosomal only Many others for specific testing, e.g., African Ancesotrs Blogs and Wikis The Genetic Genealogist thegeneticgenealogist.com Family Search Wiki familysearch.org/wiki The International Society of Genetic Genealogists www.isogg.com DNA Explained https://dna-explained.com More information Reference Groups See: Ancestry.com https://www.ancestry.com/corporate/sites/default/files/AncestryDNA-Matching- White-Paper.pdf MyHeritage: https://faq.myheritage.com/en/article/which-ethnicities-does- myheritage-compare-my-dna-with 23andme: -
Exploring Identity Through Genetic and Genealogical Research: Development of a Collaborative Course Between Humanities and Biology
Quadrivium: A Journal of Multidisciplinary Scholarship Volume 3 Issue 1 Issue 3, Spring 2011 Article 8 4-20-2011 Exploring Identity Through Genetic and Genealogical Research: Development of a Collaborative Course Between Humanities and Biology James Doan Nova Southeastern University, [email protected] Emily F. Schmitt Lavin Nova Southeastern University, [email protected] Follow this and additional works at: https://nsuworks.nova.edu/quadrivium Part of the Arts and Humanities Commons, and the Social and Behavioral Sciences Commons Recommended Citation Doan, James and Schmitt Lavin, Emily F. (2011) "Exploring Identity Through Genetic and Genealogical Research: Development of a Collaborative Course Between Humanities and Biology," Quadrivium: A Journal of Multidisciplinary Scholarship: Vol. 3 : Iss. 1 , Article 8. Available at: https://nsuworks.nova.edu/quadrivium/vol3/iss1/8 This Article is brought to you for free and open access by the CAHSS Journals at NSUWorks. It has been accepted for inclusion in Quadrivium: A Journal of Multidisciplinary Scholarship by an authorized editor of NSUWorks. For more information, please contact [email protected]. Doan and Schmitt Lavin: Exploring Identity Through Genetic and Genealogical Research: Dev About the Authors Jim Doan, Ph.D., holds a B.A. in Literature from UC—Santa Cruz, an M.A. in Folklore and Mythology from UCLA, an M.A. in Celtic Languages and Literatures, and a Ph.D. in Folklore and Celtic Studies from Harvard. Since 1988, he has taught courses in literature, the arts, folklore, and mythology at the Farquhar College of Arts and Sciences Division of Humanities. He established the Stolzenberg-Doan Endowment Fund, which supports an International Studies lecture series at NSU, as well as scholarships to allow NSU students to undertake foreign studies. -
Human Enhancement Technologies and Our Merger with Machines
Human Enhancement and Technologies Our Merger with Machines Human • Woodrow Barfield and Blodgett-Ford Sayoko Enhancement Technologies and Our Merger with Machines Edited by Woodrow Barfield and Sayoko Blodgett-Ford Printed Edition of the Special Issue Published in Philosophies www.mdpi.com/journal/philosophies Human Enhancement Technologies and Our Merger with Machines Human Enhancement Technologies and Our Merger with Machines Editors Woodrow Barfield Sayoko Blodgett-Ford MDPI • Basel • Beijing • Wuhan • Barcelona • Belgrade • Manchester • Tokyo • Cluj • Tianjin Editors Woodrow Barfield Sayoko Blodgett-Ford Visiting Professor, University of Turin Boston College Law School Affiliate, Whitaker Institute, NUI, Galway USA Editorial Office MDPI St. Alban-Anlage 66 4052 Basel, Switzerland This is a reprint of articles from the Special Issue published online in the open access journal Philosophies (ISSN 2409-9287) (available at: https://www.mdpi.com/journal/philosophies/special issues/human enhancement technologies). For citation purposes, cite each article independently as indicated on the article page online and as indicated below: LastName, A.A.; LastName, B.B.; LastName, C.C. Article Title. Journal Name Year, Volume Number, Page Range. ISBN 978-3-0365-0904-4 (Hbk) ISBN 978-3-0365-0905-1 (PDF) Cover image courtesy of N. M. Ford. © 2021 by the authors. Articles in this book are Open Access and distributed under the Creative Commons Attribution (CC BY) license, which allows users to download, copy and build upon published articles, as long as the author and publisher are properly credited, which ensures maximum dissemination and a wider impact of our publications. The book as a whole is distributed by MDPI under the terms and conditions of the Creative Commons license CC BY-NC-ND. -
Part Iv the Future of Collaborations
PART IV THE FUTURE OF COLLABORATIONS 25 COLLABORATION USING OPEN NOTEBOOK SCIENCE IN ACADEMIA Jean - Claude Bradley , Andrew S. I. D. Lang , Steve Koch , and Cameron Neylon 25.1 Introduction 426 25.2 Open Notebook Science 427 25.3 UsefulChem Project 427 25.3.1 Platforms 427 25.3.2 Medicinal Chemistry: Collaborations Between Synthetic Chemists, Computational Chemists, and Biochemists 429 25.3.3 Chemical Synthesis Strategy: Collaborations Between Synthetic Chemists, Both Locally and Remotely 430 25.3.4 Cheminformatics: Collaborations Between Chemists and Programmers 431 25.3.5 Second Life 433 25.3.6 Requesting Collaboration 433 25.3.7 Sharing Drafts of Papers and Proposals 434 25.3.8 Media Coverage: Collaborations with Journalists and Authors 434 25.3.9 Other Open Notebook Science Projects 434 25.3.10 Other Types of Collaboration 435 25.4 Open Notebook Science Solubility Challenge Collaborations 436 25.4.1 Crowdsourcing Solubility Measurements 436 25.4.2 Sponsorship 437 25.4.3 Gaining Experience with Laboratory Rotations 437 Collaborative Computational Technologies for Biomedical Research, First Edition. Edited by Sean Ekins, Maggie A. Z. Hupcey, Antony J. Williams. © 2011 John Wiley & Sons, Inc. Published 2011 by John Wiley & Sons, Inc. 425 426 COLLABORATION USING OPEN NOTEBOOK SCIENCE IN ACADEMIA 25.4.4 Solubility Modeling and Visualization 437 25.4.5 ChemTaverna and MyExperiment 437 25.5 Open Notebook Science in Undergraduate Physics Laboratory Hosted on OpenWetWare 438 25.5.1 Overview 438 25.5.2 Description of How Students and Instructor -
University Library
University Library. Report to the University of Sheffield Research Data Management Service Delivery Group Research Data Management Technical Infrastructure: A Review of Options for Development at the University of Sheffield Date: Version 2.5 25/11/2014 Version 1.0 12/05/2014 Author: John A. Lewis Executive Summary This report reviews the options available for the development of a technical infrastructure, the software and hardware systems, to support Research Data Management (RDM) at the University of Sheffield. The appropriate management of research data throughout the data lifecycle, during and after the research project, is considered good research practice. This involves data management planning during the research proposal stage; looking after active data, its creation, processing, storage and access during the project; and data stewardship, long-term curation, publishing and reuse of archive data after the end of the project. Good RDM practice benefits all stakeholders in the research process: Researchers, will secure their data against loss or unauthorized access, and may increase research impact through publishing data; Research institutions may consider research data as ‘special collections’ and will need to minimise risk to data and damage to reputation; Research Funders wish to maximise the impact of the research they fund by enabling reuse; Publishers may wish to add value to research papers by publishing the underlying data. Many research funders now mandate RDM procedures, particularly Data Management Planning (DMP), and the UK research councils policies have contributed to the RCUK common principles on data policy. Notice must be taken of the EPSRC Expectations of organisations receiving EPSRC funding. These include the requirements that the organisation will: Publish appropriately structured metadata describing the research data they hold - therefore the institution must create a public data catalogue. -
Université De Montréal BIOHACKING and CODE CONVERGENCE : A
Université de Montréal BIOHACKING AND CODE CONVERGENCE : A TRANSDUCTIVE ETHNOGRAPHY par Sarah Choukah Département de communication Faculté des arts et des sciences Thèse présentée à la Faculté des études supérieures et postdoctorales en vue de l’obtention du grade de Philosophiæ Doctor (Ph.D.) en Communication janvier 2020 ⃝c Sarah Choukah, 2019 Université de Montréal Département de Communication, Faculté des Arts et Sciences Cette thèse intitulée Biohacking and Code Convergence: A Transductive Ethnography Présentée par Sarah Choukah A été évaluée par un jury composé des personnes suivantes Brian Massumi Président-rapporteur Bardini Thierry Directeur de recherche Kathy High Membre du jury Christopher Kelty Examinateur externe François-Joseph Lapointe Représentant du Doyen Sommaire Cette thèse se déploie dans un espace de discours et de pratiques revendicatrices, à l’inter- section des cultures amateures informatiques et biotechniques, euro-américaines contempo- raines. La problématique se dessinant dans ce croisement culturel examine des métaphores et analogies au coeur d’un traffic intense, au milieu de voies de commmunications imposantes, reliant les technologies informatiques et biotechniques comme lieux d’expression médiatique. L’examen retrace les lignes de force, les médiations expressives en ces lieux à travers leurs manifestations en tant que codes —à la fois informatiques et génétiques— et reconnaît les caractères analogiques d’expressivité des codes en tant que processus de convergence. Émergeant lentement, à partir des années 40 et 50, les visions convergentes des codes ont facilité l’entrée des ordinateurs personnels dans les marchés, ainsi que dans les garages de hackers, alors que des bricoleurs de l’informatique s’en réclamaient comme espace de liberté d’information —et surtout d’innovation. -
Quotidian Report: Grassroots Data Practices to Address Public Safety
17 Quotidian Report: Grassroots Data Practices to Address Public Safety ADRIANA ALVARADO GARCIA, School of Literature, Media, & Communication, Georgia Institute of Technology, USA CHRISTOPHER A. LE DANTEC, School of Literature, Media, & Communication, Georgia Institute of Technology, USA We examine the local data practices of citizens in Mexico who use Facebook sites as a platform to report crimes and share safety-related information. We conducted 14 interviews with a variety of participants who collaborate as administrators and contributors of these online communities. The communities we ex- amined have two central components: the citizens who crowd-source data about instances of crime in dif- ferent neighborhoods in and around Mexico City, and the administrators of the Facebook sites who use the crowd-sourced data to intervene and collaborate with other stakeholders. From our interviews, we identify the community, data, and action practices used by group administrators to collect, curate, and publish in- formation about public safety that would otherwise go un-reported. The combination of these practices improves the reputation of the groups on Facebook, increases trust, and encourages sustained participation from citizens. These practices also legitimize data gathered by group members as an important grassroots tool for responding to issues of public safety that would otherwise not be reported or acted upon. Our find- ings contribute a growing body of work that aims to understand how social media enable political action in contexts where people are not being served by existing institutions. CCS Concepts: • Information systems → Collaborative and social computing systems and tools; • Human-centered computing → Empirical studies in collaborative and social computing KEYWORDS: Nonprofit organizations; activism; data practices; work practices; Mexico; social change; digital civics ACM Reference format: Adriana Alvarado Garcia and Christopher A. -
You Might Be a Robot
\\jciprod01\productn\C\CRN\105-2\CRN203.txt unknown Seq: 1 28-MAY-20 13:27 YOU MIGHT BE A ROBOT Bryan Casey† & Mark A. Lemley‡ As robots and artificial intelligence (AI) increase their influ- ence over society, policymakers are increasingly regulating them. But to regulate these technologies, we first need to know what they are. And here we come to a problem. No one has been able to offer a decent definition of robots and AI—not even experts. What’s more, technological advances make it harder and harder each day to tell people from robots and robots from “dumb” machines. We have already seen disas- trous legal definitions written with one target in mind inadver- tently affecting others. In fact, if you are reading this you are (probably) not a robot, but certain laws might already treat you as one. Definitional challenges like these aren’t exclusive to robots and AI. But today, all signs indicate we are approaching an inflection point. Whether it is citywide bans of “robot sex brothels” or nationwide efforts to crack down on “ticket scalp- ing bots,” we are witnessing an explosion of interest in regu- lating robots, human enhancement technologies, and all things in between. And that, in turn, means that typological quandaries once confined to philosophy seminars can no longer be dismissed as academic. Want, for example, to crack down on foreign “influence campaigns” by regulating social media bots? Be careful not to define “bot” too broadly (like the California legislature recently did), or the supercomputer nes- tled in your pocket might just make you one. -
Open Source Research in Sustainability
Michigan Technological University Digital Commons @ Michigan Tech Department of Materials Science and Department of Materials Science and Engineering Publications Engineering 8-15-2012 Open Source Research in Sustainability Joshua M. Pearce Michigan Technological University Follow this and additional works at: https://digitalcommons.mtu.edu/materials_fp Recommended Citation oshua M. Pearce, “Open Source Research in Sustainability”, Sustainability the Journal of Record, 5(4), pp. 238-243, 2012. http://digitalcommons.mtu.edu/materials_fp/44 Follow this and additional works at: https://digitalcommons.mtu.edu/materials_fp Published as: Joshua M. Pearce, “Open Source Research in Sustainability”, Sustainability the Journal of Record, 5(4), pp. 238-243, 2012. DOI: http://dx.doi.org/10.1089/sus.2012.9944 Open Source Research in Sustainability Joshua M. Pearce Department of Materials Science & Engineering Department of Electrical & Computer Engineering Michigan Technological University 601 M&M Building 1400 Townsend Drive Houghton, MI 49931-1295 906-487-1466 [email protected] Abstract Most academics, who as researchers and teachers dedicate their lives to information sharing, would likely agree with much of the hacker ethic, which is a belief that information-sharing is a powerful positive good and there is an ethical duty to share expertise by writing free and open-source code and facilitating access to information wherever possible. However, despite a well-established gift culture similar to that of the open source software movement in academic publishing and the tenure process many academics fail to openly provide the “source” (e.g. data sets, literature reviews, detailed experimental methodologies, designs, and open access to results) of their research. Closed research is particularly egregious when it could be used to accelerate the transition to a sustainable world and this transition is hobbled by antiquated research methodologies that slow the diffusion of innovation. -
DIY CRISPR Christi J
NORTH CAROLINA LAW REVIEW Volume 97 Number 5 Legal, Ethical, and Policy Implications of Article 17 New Gene-Editing Technologies 6-1-2019 DIY CRISPR Christi J. Guerrini G. Evan Spencer Patricia J. Zettler Follow this and additional works at: https://scholarship.law.unc.edu/nclr Part of the Law Commons Recommended Citation Christi J. Guerrini, G. E. Spencer & Patricia J. Zettler, DIY CRISPR, 97 N.C. L. Rev. 1399 (2019). Available at: https://scholarship.law.unc.edu/nclr/vol97/iss5/17 This Article is brought to you for free and open access by Carolina Law Scholarship Repository. It has been accepted for inclusion in North Carolina Law Review by an authorized editor of Carolina Law Scholarship Repository. For more information, please contact [email protected]. 97 N.C. L. REV. 1399 (2019) DIY CRISPR* CHRISTI J. GUERRINI, G. EVAN SPENCER & PATRICIA J. ZETTLER** Although scientists have been manipulating genomes since the 1970s, the recent discovery of Clustered Regularly Interspaced Short Palindromic Repeats (“CRISPR”) has expanded the possibilities not only for what gene editing might accomplish but also who might accomplish it. Because CRISPR is relatively easy, efficient, and inexpensive, it is accessible to individuals— known as “citizen scientists”—who work in nontraditional laboratory settings and may not have formal scientific training. Prompted by concerns about human applications of CRISPR, the United States is cohosting a series of international summits on human gene editing, while organizations around the world race to issue their own reports and recommendations. For the most part, however, these efforts have focused on the use of CRISPR by professional scientists working in institutional settings who are already subject to layers of formal and informal oversight. -
Workingwiki: a Mediawiki-Based Platform for Collaborative Research
WorkingWiki: a MediaWiki-based platform for collaborative research Lee Worden McMaster University Hamilton, Ontario, Canada University of California, Berkeley Berkeley, California, United States [email protected] Abstract WorkingWiki is a software extension for the popular MediaWiki platform that makes a wiki into a powerful environment for collaborating on publication-quality manuscripts and software projects. Developed in Jonathan Dushoff’s theoretical biology lab at McMaster University and available as free software, it allows wiki users to work together on anything that can be done by using UNIX commands to transform textual “source code” into output. Researchers can use it to collaborate on programs written in R, python, C, or any other language, and there are special features to support easy work on LATEX documents. It develops the potential of the wiki medium to serve as a combination collaborative text editor, development environment, revision control system, and publishing platform. Its potential uses are open-ended — its processing is controlled by makefiles that are straightforward to customize — and its modular design is intended to allow parts of it to be adapted to other purposes. Copyright c 2011 by Lee Worden ([email protected]). This work is licensed under the Creative Commons Attribution 3.0 license. The human readable license can be found here: http: //creativecommons.org/licenses/by/3.0. 1 Introduction The remarkable success of Wikipedia as a collaboratively constructed repository of human knowledge is strong testimony to the power of the wiki as a medium for online collaboration. Wikis — websites whose content can be edited by readers — have been adopted by great numbers of diverse groups around the world hoping to compile and present their shared knowledge. -
Workingwiki: a Mediawiki-Based Platform for Collaborative Research
WorkingWiki: a MediaWiki-based platform for collaborative research Lee Worden McMaster University Hamilton, Ontario, Canada University of California, Berkeley Berkeley, California, United States [email protected] Abstract WorkingWiki is a software extension for the popular MediaWiki platform that makes a wiki into a powerful environment for collaborating on publication-quality manuscripts and software projects. Developed in Jonathan Dushoff’s theoretical biology lab at McMaster University and available as free software, it allows wiki users to work together on anything that can be done by using UNIX commands to transform textual “source code” into output. Researchers can use it to collaborate on programs written in R, python, C, or any other language, and there are special features to support easy work on LATEX documents. It develops the potential of the wiki medium to serve as a combination collaborative text editor, development environment, revision control system, and publishing platform. Its potential uses are open-ended — its processing is controlled by makefiles that are straightforward to customize — and its modular design is intended to allow parts of it to be adapted to other purposes. Copyright c 2011 by Lee Worden ([email protected]). This work is licensed under the Creative Commons Attribution 3.0 license. The human readable license can be found here: http: //creativecommons.org/licenses/by/3.0. 1 Introduction The remarkable success of Wikipedia as a collaboratively constructed repository of human knowledge is strong testimony to the power of the wiki as a medium for online collaboration. Wikis — websites whose content can be edited by readers — have been adopted by great numbers of diverse groups around the world hoping to compile and present their shared knowledge.