Quick viewing(Text Mode)

Evolutionary History of the European Free-Tailed Bat, a Tropical Affinity Species Spanning Across the Mediterranean Basin

Evolutionary History of the European Free-Tailed Bat, a Tropical Affinity Species Spanning Across the Mediterranean Basin

| | DOI: 10.1111/jzs.12326

ORIGINAL ARTICLE

Evolutionary history of the European free-tailed , a tropical affinity species spanning across the Mediterranean Basin

Francisco Amorim1,2 | Orly Razgour3| Vanessa A. Mata1,2| Susana Lopes1| Raquel Godinho1,2,4| Carlos Ibáñez5| Javier Juste5| Stephen J. Rossiter6| Pedro Beja1,7| Hugo Rebelo1,7

1 Abstract 2 3 Tadarida teniotis 4 5 T. teniotis 6 T. teniotis Correspondence T. teniotis Funding information KEYWORDS

J Zool Syst Evol Res. 2020;58:499–518. © 2019 Blackwell Verlag GmbH|499 | AMORIM et Al.

| T. teniotis, which Herpestes ichneumon T. teniotis Tadarida teniotis Tadarida brasiliensis Nyctinomops macrotis | Tadarida | AMORIM et Al. |

COI-mini and D-loop-mini, |

seqscape | T. teniotis | mitochondrial genotyping Tadarida teniotis T. teniotis T. teniotis T. latouchei were also COIcytochrome c oxidase subunit I ATP6ATP synthase subunit 6 CytBcytochrome b D-loop COICOI- miniD-loopD-loop-mini T. teniotis T. latouchei

qiagen

COI genemapper v ATP6CytBD-loop | AMORIM et Al.

| | structure

arlequin 3.5 KK 56 Φ Φ Φ structure harvaster v0.6.94 popart

clumpp K K

beast v nT. la- touchei

partitionfinder | demographic history 8

tracer v | runs T. teniotis was recon

diyabc v2.1 |

genetix v COI and D-loop

eobs

AMORIM et Al. |

6 | Scenario 1 | –3 and 10–4 COI and D-loop

par- titionfinder v Scenario 2 COID-loop T. teniotis 5.25ECOI D-loop Scenario 3 3 and 1E6 3 and 2E5 45 34 Scenario 4 1E6 4 Scenario 5

| AMORIM et Al.

| | NNN COI N T.teniotis N T. latouchei 2 T. teniotis in museum collec χ p θ plicatus | T. teniotis T. teniotis were suc COID-loop CytB ATP6 APT6D-loop N

structure p

Tadarida teniotis based on COIATP6CytBD-Loop nT. latouchei n AMORIM et Al. | | AMORIM et Al.

Tadarida teniotis

Mean Allele Mean Allelic

frequency richness private alleles He Hobs Haplotypic diversity diversity (Pi) 0 0.58 0.63 0.40 0.0004 1 0.81 1.00 0.0022 14 0.80 0.92 0.0013 1 1.00 0.0011 3 0.80 0.83 0.0010 3 0.90 0.0011 0 0.83 0.0040 2 1.00 0.0036

Note: SD

eobs

Tadarida teniotis structure K

p | demographic history AMORIM et Al. |

Tadarida teniotis

Tadarida teniotis T. teniotis

| Myotis bech- T. teniotis steinii | | AMORIM et Al.

Nyctalus noctula | Myotis myotisRhinolophus ferrumequinum Miniopterus schreibersii R. fer- T. teniotis rumequinum T. teniotis T. te- niotis T. brasiliensisT. teniotis AMORIM et Al. |

| ORCID Francisco Amorim

Methods in Ecology and Evolution 5 Journal of Mammalogy 93 Barbastella6 Ecology and Evolution8 Ecology81 Molecular Ecology11 T. teniotis Trends in Ecology & Evolution 23 T. teniotis Tadarida teniotis Tadarida teniotis Natura Rerum 3 Molecular Phylogenetics and Evolution99 The Mediterranean region: biological diversity in space and time | AMORIM et Al.

Bulletin Du Muséum National D’histoire Trends in Ecology and Evolution13 Naturelle28 Review28 Zoological Journal of the Linnean Society Molecular Biology 174 and Evolution 29 Journal of Statistical Software86 Conservation Genetics Resources4 Oryctolagus cuniculus Evolution 56 Molecular Ecology Resources 10 Conservation Biology 12 BioTechniques 20 Atlas of Paleoclimates 3156 and Paleoenvironments of the Northern Hemisphere Biological Reviews of the Cambridge Philosophical Society 76 Biological Journal of the Linnean Society96 Hemidactylus Molecular Phylogenetics and Evolution 38 Journal of Biogeography38 Journal of Biogeography 45 Biological Journal of the Linnean Society68 jbi.13382 Nature 405 Myotis myotis. Journal of Evolutionary Biology14 2000. Molecular Phylogenetics and Evolution54 Bioinformatics 30 Molecular Ecology Resources9 BMC Bioinformatics11 Journal of Reproductive biology of Biogeography41 Bioinformatics23 Trends in Ecology and Evolution26 Bioinformatics 24 Proceedings of the National Academy of Sciences 110 Heredity 101 AMORIM et Al. |

Canary Islands. Trends in Ecology & Evolution15 Nature403 Molecular Phylogenetics and Evolution31 Bioinformatics 26 Biological Journal of the Linnean Society 75 Quaternary Science Reviews 25 Nyctalus noctula Evolution 53 Bioinformatics28 Molecular Ecology Resources 15 Global Ecology and Biogeography 21 Genetics 155 Systematic Biology 67 Molecular Ecology 17 syy032 Hemidactylus turcicus Molecular Phylogenetics and Evolution58 Molecular Ecology18 Ecology Letters 16 analyses. Molecular Biology and Evolution34 Proceedings of the National Academy of Sciences 108 Methods in Ecology and Evolution6 Nature Protocols 2 libraries. Molecular Ecology Resources 11 Molecular Ecology16 Tadarida teniotis. Acta Chiropterologica6 Myotis Molecular Phylogenetics and Evolution 21 Tadarida teniotisBiology Letters12 Molecular Ecology17 Mitochondrial DNA Part B 2 review. Mammalian Biology - Zeitschrift Für Säugetierkunde 80 Tadarida brasil- Nature Biotechnology18 iensis Integrative and Comparative Biology48 Genetics 129 | AMORIM et Al.

Evolution56 Figure S1. Molecular Ecology 7 Figure S2. Molecular Phylogenetics and Evolution23 BioTechniques37 Ib and Fr Genetical Research 89 Figure S3.T. teniotis cytochrome c oxidase subunit I ATP6cytochrome b Dloop Figure S4. COI ATP6 CytB and D-Loop Figure S5. Tadarida teniotis COI-mini and D-Loop-mini Figure S6.structureTadarida teni- otis H H obs p Figure S7. Ib and Fr Data S1. t.

Tadarida teniotisθ values.

Tadarida teniotisF J Zool Syst Evol Res. 2020;58:499–518.

jzs.12326 AMORIM et Al. | Country/ Region Israel/ Yoav Israel/ Yoav Yes Yes Yes n/a n/a n/a Yes Yes Micros Yes Yes Yes Yes Yes Yes Yes n/a n/a n/a n/a n/a n/a n/a Yes n/a n/a n/a n/a Yes n/a n/a n/a n/a CytB n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a ATP6 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a D-Loop n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a COI mini n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a Lat/ Long 22.2441.41/ 31.58/ 34.88 31.58/ 34.88 40.64/ 22.94 40.64/ 22.94 30.01/ 31.21 40.88/ 14.2 34.00/ 36.21 34 0.00/ 36.21 34.00/ 35.83 Provider [voucher] Sample Code | AMORIM et Al. Country/ Region Micros Yes n/a n/a n/a n/a yes n/a n/a Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes CytB n/a n/a n/a n/a n/a n/a /a ATP6 n/a n/a n/a n/a n/a n/a n D-Loop n/a n/a n/a n/a mini n/a COI n/a n/a n/a n/a n/a n/a Lat/ Long 35.34/ 25.13 41.93/ 12.5241.93/ 41.93/ 12.5241.93/ 41.93/ 12.5241.93/ 41.93/ 12.5241.93/ 41.93/ 12.5241.93/ 43.56/ 10.32 Provider [voucher] Sample Code AMORIM et Al. | Country/ Region Micros Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes /a CytB n /a ATP6 n D-Loop COI Lat/ Long Provider [voucher] Sample Code | AMORIM et Al. Country/ Region Micros Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes n/a Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes CytB n/a n/a n/a n/a n/a ATP6 n/a n/a n/a n/a n/a n/a n/a D-Loop n/a COI n/a Lat/ Long Provider [voucher] Sample Code AMORIM et Al. | Country/ Region n/a n/a n/a Micros Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes Yes n/a n/a Yes Yes Yes n/a Yes n/a Yes n/a Yes n/a n/a n/a CytB n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a ATP6 n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a D-Loop n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a mini COI n/a n/a n/a n/a n/a n/a Lat/ Long Provider [voucher] Sample Code | AMORIM et Al. 2 Mitochondrial DNA Part B teniotis

T. Country/ Region Micros n/a n/a n/a n/a CytB n/a n/a n/a n/a ATP6 n/a n/a n/a n/a D-Loop n/a n/a n/a n/a latouchei

T. COI n/a mini mini mini teniotis .

T. Lat/ Long

latouchei

T. Chaerephon plicatus Provider [voucher] Sample Code a b c d

Top View