Coprophagous Features in Carnivorous Nepenthes Plants: a Task for Ureases
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Evaluating the Adaptive Evolutionary Convergence of Carnivorous Plant Taxa Through Functional Genomics
Evaluating the adaptive evolutionary convergence of carnivorous plant taxa through functional genomics Gregory L. Wheeler and Bryan C. Carstens Department of Evolution, Ecology, & Organismal Biology, The Ohio State University, Columbus, OH, United States of America ABSTRACT Carnivorous plants are striking examples of evolutionary convergence, displaying complex and often highly similar adaptations despite lack of shared ancestry. Using available carnivorous plant genomes along with non-carnivorous reference taxa, this study examines the convergence of functional overrepresentation of genes previously implicated in plant carnivory. Gene Ontology (GO) coding was used to quantitatively score functional representation in these taxa, in terms of proportion of carnivory- associated functions relative to all functional sequence. Statistical analysis revealed that, in carnivorous plants as a group, only two of the 24 functions tested showed a signal of substantial overrepresentation. However, when the four carnivorous taxa were analyzed individually, 11 functions were found to be significant in at least one taxon. Though carnivorous plants collectively may show overrepresentation in functions from the predicted set, the specific functions that are overrepresented vary substantially from taxon to taxon. While it is possible that some functions serve a similar practical purpose such that one taxon does not need to utilize both to achieve the same result, it appears that there are multiple approaches for the evolution of carnivorous function in plant genomes. Our approach could be applied to tests of functional convergence in other systems provided on the availability of genomes and annotation data for a group. Submitted 27 October 2017 Accepted 13 January 2018 Subjects Bioinformatics, Evolutionary Studies, Genomics, Plant Science Published 31 January 2018 Keywords Carnivorous plants, Gene Ontology, Functional genomics, Convergent evolution Corresponding author Gregory L. -
The Miniature Genome of a Carnivorous Plant Genlisea Aurea
Leushkin et al. BMC Genomics 2013, 14:476 http://www.biomedcentral.com/1471-2164/14/476 RESEARCH ARTICLE Open Access The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences Evgeny V Leushkin1,2, Roman A Sutormin1, Elena R Nabieva1, Aleksey A Penin1,2,3, Alexey S Kondrashov1,4 and Maria D Logacheva1,5* Abstract Background: Genlisea aurea (Lentibulariaceae) is a carnivorous plant with unusually small genome size - 63.6 Mb – one of the smallest known among higher plants. Data on the genome sizes and the phylogeny of Genlisea suggest that this is a derived state within the genus. Thus, G. aurea is an excellent model organism for studying evolutionary mechanisms of genome contraction. Results: Here we report sequencing and de novo draft assembly of G. aurea genome. The assembly consists of 10,687 contigs of the total length of 43.4 Mb and includes 17,755 complete and partial protein-coding genes. Its comparison with the genome of Mimulus guttatus, another representative of higher core Lamiales clade, reveals striking differences in gene content and length of non-coding regions. Conclusions: Genome contraction was a complex process, which involved gene loss and reduction of lengths of introns and intergenic regions, but not intron loss. The gene loss is more frequent for the genes that belong to multigenic families indicating that genetic redundancy is an important prerequisite for genome size reduction. Keywords: Genome reduction, Carnivorous plant, Intron, Intergenic region Background evolutionary and functional points of view. In a model In spite of the similarity of basic cellular processes in eu- plant species, Arabidopsis thaliana, number of protein- karyotes, their genome sizes are extraordinarily variable. -
Carnivorous Plant Responses to Resource Availability
Carnivorous plant responses to resource availability: environmental interactions, morphology and biochemistry Christopher R. Hatcher A doctoral thesis submitted in partial fulfilment of requirements for the award of Doctor of Philosophy of Loughborough University November 2019 © by Christopher R. Hatcher (2019) Abstract Understanding how organisms respond to resources available in the environment is a fundamental goal of ecology. Resource availability controls ecological processes at all levels of organisation, from molecular characteristics of individuals to community and biosphere. Climate change and other anthropogenically driven factors are altering environmental resource availability, and likely affects ecology at all levels of organisation. It is critical, therefore, to understand the ecological impact of environmental variation at a range of spatial and temporal scales. Consequently, I bring physiological, ecological, biochemical and evolutionary research together to determine how plants respond to resource availability. In this thesis I have measured the effects of resource availability on phenotypic plasticity, intraspecific trait variation and metabolic responses of carnivorous sundew plants. Carnivorous plants are interesting model systems for a range of evolutionary and ecological questions because of their specific adaptations to attaining nutrients. They can, therefore, provide interesting perspectives on existing questions, in this case trait-environment interactions, plant strategies and plant responses to predicted future environmental scenarios. In a manipulative experiment, I measured the phenotypic plasticity of naturally shaded Drosera rotundifolia in response to disturbance mediated changes in light availability over successive growing seasons. Following selective disturbance, D. rotundifolia became more carnivorous by increasing the number of trichomes and trichome density. These plants derived more N from prey and flowered earlier. -
A New Carnivorous Plant Lineage (Triantha) with a Unique Sticky-Inflorescence Trap
A new carnivorous plant lineage (Triantha) with a unique sticky-inflorescence trap Qianshi Lina,b,1, Cécile Anéc,d, Thomas J. Givnishc, and Sean W. Grahama,b aDepartment of Botany, University of British Columbia, Vancouver, BC V6T 1Z4, Canada; bUBC Botanical Garden, University of British Columbia, Vancouver, BC V6T 1Z4, Canada; cDepartment of Botany, University of Wisconsin–Madison, Madison, WI 53706; and dDepartment of Statistics, University of Wisconsin–Madison, Madison WI 53706 Edited by Elizabeth A. Kellogg, Donald Danforth Plant Science Center, St. Louis, MO, and approved June 5, 2021 (received for review October 30, 2020) Carnivorous plants consume animals for mineral nutrients that and in wetlands, including bogs, marly shorelines, and calcareous enhance growth and reproduction in nutrient-poor environments. spring-fed fens. In bogs, T. occidentalis is commonly found with Here, we report that Triantha occidentalis (Tofieldiaceae) represents recognized carnivorous plants such as Drosera rotundifolia a previously overlooked carnivorous lineage that captures insects on (Droseraceae) and Pinguicula vulgaris (Lentibulariaceae). During sticky inflorescences. Field experiments, isotopic data, and mixing the summer flowering season, T. occidentalis produces leafless models demonstrate significant N transfer from prey to Triantha, erect flowering stems up to 80 cm tall (12). These scapes have with an estimated 64% of leaf N obtained from prey capture in sticky glandular hairs, especially on their upper portions, a feature previous years, comparable to levels inferred for the cooccurring distinguishing Triantha from other genera of Tofieldiaceae round-leaved sundew, a recognized carnivore. N obtained via carnivory (Fig. 1). Small insects are often found trapped by these hairs; is exported from the inflorescence and developing fruits and may herbarium specimens are frequently covered in insects (Fig. -
Towards Resolving Lamiales Relationships
Schäferhoff et al. BMC Evolutionary Biology 2010, 10:352 http://www.biomedcentral.com/1471-2148/10/352 RESEARCH ARTICLE Open Access Towards resolving Lamiales relationships: insights from rapidly evolving chloroplast sequences Bastian Schäferhoff1*, Andreas Fleischmann2, Eberhard Fischer3, Dirk C Albach4, Thomas Borsch5, Günther Heubl2, Kai F Müller1 Abstract Background: In the large angiosperm order Lamiales, a diverse array of highly specialized life strategies such as carnivory, parasitism, epiphytism, and desiccation tolerance occur, and some lineages possess drastically accelerated DNA substitutional rates or miniaturized genomes. However, understanding the evolution of these phenomena in the order, and clarifying borders of and relationships among lamialean families, has been hindered by largely unresolved trees in the past. Results: Our analysis of the rapidly evolving trnK/matK, trnL-F and rps16 chloroplast regions enabled us to infer more precise phylogenetic hypotheses for the Lamiales. Relationships among the nine first-branching families in the Lamiales tree are now resolved with very strong support. Subsequent to Plocospermataceae, a clade consisting of Carlemanniaceae plus Oleaceae branches, followed by Tetrachondraceae and a newly inferred clade composed of Gesneriaceae plus Calceolariaceae, which is also supported by morphological characters. Plantaginaceae (incl. Gratioleae) and Scrophulariaceae are well separated in the backbone grade; Lamiaceae and Verbenaceae appear in distant clades, while the recently described Linderniaceae are confirmed to be monophyletic and in an isolated position. Conclusions: Confidence about deep nodes of the Lamiales tree is an important step towards understanding the evolutionary diversification of a major clade of flowering plants. The degree of resolution obtained here now provides a first opportunity to discuss the evolution of morphological and biochemical traits in Lamiales. -
Carnivorous Plant Newsletter V44 N4 December 2015
Technical Refereed Contribution Photoperiod regulates Cape Sundew (Drosera capensis) gland secretion and leaf development Wang Dong-Hui • College of Life Science • Peking University • Haidian • Beijing 100871 • PRC Wang Dong-Qi • Cui Yi-Wei • Yang Lu • Gu Xiao-Di • Song Wen-Fei • Li Feng • The High School Affiliated to Renmin University of China • Haidian • Beijing 100080 • PRC • lifeng2004@pku. edu.cn Keywords: carnivorous plant, photoperiod, plant development, Drosera capensis. Abstract: Cape Sundew (Drosera capensis), a carnivorous plant that catches flies with sticky mu- cus, has attracted great interest among botanists and horticulture hobbyists since the Darwin era. But little is known about how this carnivorous plant regulates morphogenesis and organ formation to accommodate environmental changes. In this article we present the relationship between gland secretion of Cape Sundew and photoperiod utilizing various physiological and morphological meth- ods. We show that Cape Sundew grows faster and secretes more mucus under long days than under short days. Under long days leaf length and the blade\petiole ratio increases, leading to increased fly catching capacities. More importantly, in the short term, the rhythm of photoperiod causes Cape Sundew to secrete mucus independent of photo intensity. Introduction As one of the most special plant groups, carnivorous plants perform photosynthesis and feed on insects and some large carnivorous plants even prey on birds and small mammals. Darwin believed that a carnivorous plant was one of the most astonishing phenomena in the world (Dar- win 1875; Ellison & Gotelli 2009). Carnivorous plants are represented by more than 600 species belonging to 20 genera (Ellison & Gotelli 2001; McPherson 2010). -
Species of Interest in Braxton Mire
Species of Interest in Braxton Mire Table of Contents Introduction 1 Aporostylis bifolia 2 Bulbinella angustifolia 3 Carpha alpina 4 Celmisia gracilenta 5 Chionochloa rubra subsp. cuprea 6 Coprosma rugosa 7 Dracophyllum longifolium var. longifolium 8 Drosera spatulata 9 Empodisma minus 10 Gaultheria macrostigma 11 Gleichenia dicarpa 12 Herpolirion novaezelandiae 13 Leptospermum scoparium var. scoparium 14 Lobelia angulata 15 Machaerina tenax 16 Oreobolus pectinatus 17 Thelymitra cyanea 18 Glossary 19 Made on the New Zealand Plant Conservation Network website – www.nzpcn.org.nz Copyright All images used in this book remain copyright of the named photographer. Any reproduction, retransmission, republication, or other use of all or part of this book is expressly prohibited, unless prior written permission has been granted by the New Zealand Plant Conservation Network ([email protected]). All other rights reserved. © 2017 New Zealand Plant Conservation Network Introduction About the Network This book was compiled from information stored on the The Network has more than 800 members worldwide and is website of the New Zealand Plant Conservation Network New Zealand's largest nongovernmental organisation solely (www.nzpcn.org.nz). devoted to the protection and restoration of New Zealand's indigenous plant life. This website was established in 2003 as a repository for information about New Zealand's threatened vascular The vision of the New Zealand Plant Conservation Network is plants. Since then it has grown into a national database of that 'no indigenous species of plant will become extinct nor be information about all plants in the New Zealand botanic placed at risk of extinction as a result of human action or region including both native and naturalised vascular indifference, and that the rich, diverse and unique plant life of plants, threatened mosses, liverworts and fungi. -
Drosera Sp: a Critical Review on Phytochemical and Ethnomedicinal Aspect
International Journal of Pharmacy and Biological Sciences-IJPBSTM (2019) 9 (1): 596-601 Online ISSN: 2230-7605, Print ISSN: 2321-3272 Research Article | Biological Sciences | Open Access | MCI Approved UGC Approved Journal Drosera Sp: A Critical Review on Phytochemical and Ethnomedicinal Aspect Rakesh Goswami1, Tanmoy Sinha2* and Kishore Ghosh3 1 Department of Bio-Chemistry, Vidyasagar University, Medinipur, West Bengal 721102. 2 Department of Botany, Cytogenetic and Molecular Biology Section, University of Burdwan. 3Department of Botany, University of Burdwan. Received: 10 Oct 2018/ Accepted: 8 Nov 2018/ Published online: 01Jan 2019 Corresponding Author Email: [email protected] Abstract Day by day medicinal plant research and their phytometabolites drawing interest in medical sciences due to loyal medicinal and pharmacological values. Drosera is a very well-known insectivorous plant and it is consists of near about 170 species throughout the world. Phytochemical profiling of this species has revealed the presence of highly valuable phytochemicals like Quercetin, Hyperoside, Isoquercitrin and Naphthoquinones etc. We utilized logical writing and scientific literature from electronic search engine such as Spinger link, science direct, Pub Med, Scopus and BioMed central as well as relevant books, websites, scientific publications and dissertation as a source of information. According to recent research information, these compounds are strongly associated with anti-cancerous, anti- microbial and also anti-inflammatory activities. This review intends to investigate the published report regarding phytochemicals, ethnomedicinal and pharmacological viewpoints and put forth the therapeutic potential of Drosera. Future research can be directed to extensive investigation about phytochemistry, clinical trials and pharmacokinetics acquiring safety data so as to add new dimensions to therapeutic utilization of Drosera. -
Drosera Spatulata
Plant of the Month - October by Allan Carr Drosera spatulata Spoon-leaved Sundew Pronunciation: DROSS-er-a spat-ewe-LAH-ta DROSERACEAE Derivation: Drosera: from the Greek droseros (dewy) – refers to the droplets on the glandular hairs; spatulata: from the Latin spatulate (shaped like a spatula) – refers to the spoon-shaped leaves. Habit with numerous flower stalks Leaves forming a rosette Drosera is a large genus of about 100 species distributed in temperate and tropical parts of the world. They are well developed in Australia with about 54 named species and many more waiting to be described. Forty-two species are known from the south-west of WA and the rest occur in the eastern states and tropical areas. They are carnivorous and trap small insects with glandular hairs mostly on the upper surface of the leaves. Enzymes break down the insect’s protein and the resulting solution is absorbed by the leaf. This aids the plant’s nutrition but is not essential. However, the extra nutrition may be significant in flower and seed production. Description: Drosera spatulata belongs to a group of rosetted sundews, small perennial herbs with a basal rosette of leaves. This sundew has a wide distribution across Asia, Australia and New Zealand in moist, sandy locations - seepage sites, stream banks and wetland areas. Leaves in a basal rosette to 40 mm in diameter are spoon-shaped with glandular hairs that are pressure sensitive. These hairs move inwards and downwards when touched, trapping tiny creatures. Leaf colour may vary from a light creamy, green to a deep red. -
Revision of the Drosera Villosa Complex (Droseraceae) Supports 200 Year-Old Neglected Species Concepts
Phytotaxa 156 (1): 1–40 (2014) ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Article PHYTOTAXA Copyright © 2014 Magnolia Press ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.156.1.1 Exhuming Saint-Hilaire: revision of the Drosera villosa complex (Droseraceae) supports 200 year-old neglected species concepts PAULO MINATEL GONELLA1, FERNANDO RIVADAVIA2, PAULO TAKEO SANO3 & ANDREAS FLEISCHMANN4 1 Programa de Pós-Graduação em Botânica, Laboratório de Sistemática Vegetal, Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, CEP 05508–900, São Paulo, Brasil; e-mail: [email protected] 2 1 Daniel Burnham Ct., San Francisco, 94109, USA; e-mail: [email protected] 3 Laboratório de Sistemática Vegetal, Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, CEP 05508– 900, São Paulo, Brasil; e-mail: [email protected] 4 LMU Munich, Systematic Botany and Mycology, Menzinger Strasse 67, D-80638 Munich, Germany; e-mail: [email protected] Abstract The Drosera villosa complex is here reviewed and includes six species endemic to Brazil: D. villosa, here identified for the first time as a narrow endemic species native to the neighboring highlands of the Serra Negra and Serra do Ibitipoca, in southern Minas Gerais state; D. ascendens, rediscovered nearly 200 years after its description, narrowly endemic to the Diamantina Plateau, central Minas Gerais; D. graomogolensis, endemic to northern Minas Gerais, but here found to be more widespread than previously reported; D. latifolia, a highly polymorphic and widespread taxon, previously placed in synonymy of D. villosa and heretofore misidentified as D. ascendens, is here elevated to species rank; and two new species here described, D. -
The Linderniaceae and Gratiolaceae Are Further Lineages Distinct from the Scrophulariaceae (Lamiales)
Research Paper 1 The Linderniaceae and Gratiolaceae are further Lineages Distinct from the Scrophulariaceae (Lamiales) R. Rahmanzadeh1, K. Müller2, E. Fischer3, D. Bartels1, and T. Borsch2 1 Institut für Molekulare Physiologie und Biotechnologie der Pflanzen, Universität Bonn, Kirschallee 1, 53115 Bonn, Germany 2 Nees-Institut für Biodiversität der Pflanzen, Universität Bonn, Meckenheimer Allee 170, 53115 Bonn, Germany 3 Institut für Integrierte Naturwissenschaften ± Biologie, Universität Koblenz-Landau, Universitätsstraûe 1, 56070 Koblenz, Germany Received: July 14, 2004; Accepted: September 22, 2004 Abstract: The Lamiales are one of the largest orders of angio- Traditionally, Craterostigma, Lindernia and their relatives have sperms, with about 22000 species. The Scrophulariaceae, as been treated as members of the family Scrophulariaceae in the one of their most important families, has recently been shown order Lamiales (e.g., Takhtajan,1997). Although it is well estab- to be polyphyletic. As a consequence, this family was re-classi- lished that the Plocospermataceae and Oleaceae are their first fied and several groups of former scrophulariaceous genera branching families (Bremer et al., 2002; Hilu et al., 2003; Soltis now belong to different families, such as the Calceolariaceae, et al., 2000), little is known about the evolutionary diversifica- Plantaginaceae, or Phrymaceae. In the present study, relation- tion of most of the orders diversity. The Lamiales branching ships of the genera Craterostigma, Lindernia and its allies, hith- above the Plocospermataceae and Oleaceae are called ªcore erto classified within the Scrophulariaceae, were analyzed. Se- Lamialesº in the following text. The most recent classification quences of the chloroplast trnK intron and the matK gene by the Angiosperm Phylogeny Group (APG2, 2003) recognizes (~ 2.5 kb) were generated for representatives of all major line- 20 families. -
Coprophagous Features in Carnivorous Nepenthes Plants: a Task for Ureases
Coprophagous features in carnivorous Nepenthes plants: a task for ureases Ayufu Yilamujiang1, Anting Zhu2, Rodrigo Ligabue-Braun3, Stefan Bartram1, Claus-Peter Witte2, Rainer Hedrich4, Mitsuyasu Hasabe5, Caroline R. Schöner6, Michael G. Schöner6, Gerald Kerth6, Célia R. Carlini3,7, Axel Mithöfer1,* 1Department of Bioorganic Chemistry, Max Plank Institute for Chemical Ecology, 07745 Jena, Germany. 2Institute of Plant Nutrition, Leibniz University Hannover, 30419 Hannover, Germany. 3Center of Biotechnology, Universidade Federal do Rio Grande do Sul, 91501-970 Porto Alegre, Brazil. 4Institute for Molecular Plant Physiology and Biophysics, University of Würzburg, 97082 Würzburg, Germany. 5National Institute for Basic Biology, Okazaki 444-8585, Japan. 6Zoological Institute and Museum, Ernst-Moritz-Arndt-Universität Greifswald, 17489 Greifswald, Germany. 7Brain Institute (BRAINS-InsCer), Pontifícia Universidade Católica do Rio Grande do Sul, 90610-000 Porto Alegre, Brazil. Supplementary Information: Figure S1. Homology among amino acid sequences of ureases. Included are ureases from seven carnivorous plants (Aldrovanda vesiculosa, Cephalotus follicularis, Dionaea muscipula, Drosera spatulata, Genlisea aurea, Nepenthes alata, Nepenthes hemsleyana) and three non- carnivorous plants (Canavalia ensiformis, Glycine max embryo-specific, Arabidopsis thaliana). Different colors indicate individual amino acids that are different to the consensus amino acid at a particular position. Table S1: Sequence similarities for model and carnivorous plant-derived