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The Fishing and Illegal Trade of the Angelshark DNA Barcoding
Fisheries Research 206 (2018) 193–197 Contents lists available at ScienceDirect Fisheries Research journal homepage: www.elsevier.com/locate/fishres The fishing and illegal trade of the angelshark: DNA barcoding against T misleading identifications ⁎ Ingrid Vasconcellos Bunholia, Bruno Lopes da Silva Ferrettea,b, , Juliana Beltramin De Biasia,b, Carolina de Oliveira Magalhãesa,b, Matheus Marcos Rotundoc, Claudio Oliveirab, Fausto Forestib, Fernando Fernandes Mendonçaa a Laboratório de Genética Pesqueira e Conservação (GenPesC), Instituto do Mar (IMar), Universidade Federal de São Paulo (UNIFESP), Santos, SP, 11070-102, Brazil b Laboratório de Biologia e Genética de Peixes (LBGP), Instituto de Biociências de Botucatu (IBB), Universidade Estadual Paulista (UNESP), Botucatu, SP, 18618-689, Brazil c Acervo Zoológico da Universidade Santa Cecília (AZUSC), Universidade Santa Cecília (Unisanta), Santos, SP, 11045-907, Brazil ARTICLE INFO ABSTRACT Handled by J Viñas Morphological identification in the field can be extremely difficult considering fragmentation of species for trade Keywords: or high similarity between congeneric species. In this context, the shark group belonging to the genus Squatina is Conservation composed of three species distributed in the southern part of the western Atlantic. These three species are Endangered species classified in the IUCN Red List as endangered, and they are currently protected under Brazilian law, which Fishing monitoring prohibits fishing and trade. Molecular genetic tools are now used for practical taxonomic identification, parti- Forensic genetics cularly in cases where morphological observation is prevented, e.g., during fish processing. Consequently, DNA fi Mislabeling identi cation barcoding was used in the present study to track potential crimes against the landing and trade of endangered species along the São Paulo coastline, in particular Squatina guggenheim (n = 75) and S. -
Parameterisation and Application of Dynamic Energy Budget Model to Sea Cucumber Apostichopus Japonicus
Vol. 9: 1–8, 2017 AQUACULTURE ENVIRONMENT INTERACTIONS Published January 10 doi: 10.3354/aei00210 Aquacult Environ Interact OPENPEN ACCESSCCESS Parameterisation and application of dynamic energy budget model to sea cucumber Apostichopus japonicus Jeffrey S. Ren1, Jeanie Stenton-Dozey1, Jihong Zhang2,3,* 1National Institute of Water and Atmospheric Research, 10 Kyle Street, PO Box 8602, Christchurch 8440, New Zealand 2Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 106 Nanjing Road, Qingdao 266071, PR China 3Function Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, 1 Wenhai Road, Aoshanwei, Jimo, Qingdao 266200, PR China ABSTRACT: The sea cucumber Apostichopus japonicus is an important aquaculture species in China. As global interest in sustainable aquaculture grows, the species has increasingly been used for co-culture in integrated multitrophic aquaculture (IMTA). To provide a basis for opti - mising stocking density in IMTA systems, we parameterised and validated a standard dynamic energy budget (DEB) model for the sea cucumber. The covariation method was used to estimate parameters of the model with the DEBtool package. The method is based on minimisation of the weighted sum of squared deviation for datasets and model predictions in one single-step pro- cedure. Implementation of the package requires meaningful initial values of parameters, which were estimated using non-linear regression. Parameterisation of the model suggested that the accuracy of the lower (TL) and upper (TH) boundaries of tolerance temperatures are particularly important, as these would trigger the unique behaviour of the sea cucumber for hibernation and aestivation. After parameterisation, the model was validated with datasets from a shellfish aqua- culture environment in which sea cucumbers were co-cultured with the scallop Chlamys farreri and Pacific oyster Crassostrea gigas at various combinations of density. -
Bibliography Database of Living/Fossil Sharks, Rays and Chimaeras (Chondrichthyes: Elasmobranchii, Holocephali) Papers of the Year 2016
www.shark-references.com Version 13.01.2017 Bibliography database of living/fossil sharks, rays and chimaeras (Chondrichthyes: Elasmobranchii, Holocephali) Papers of the year 2016 published by Jürgen Pollerspöck, Benediktinerring 34, 94569 Stephansposching, Germany and Nicolas Straube, Munich, Germany ISSN: 2195-6499 copyright by the authors 1 please inform us about missing papers: [email protected] www.shark-references.com Version 13.01.2017 Abstract: This paper contains a collection of 803 citations (no conference abstracts) on topics related to extant and extinct Chondrichthyes (sharks, rays, and chimaeras) as well as a list of Chondrichthyan species and hosted parasites newly described in 2016. The list is the result of regular queries in numerous journals, books and online publications. It provides a complete list of publication citations as well as a database report containing rearranged subsets of the list sorted by the keyword statistics, extant and extinct genera and species descriptions from the years 2000 to 2016, list of descriptions of extinct and extant species from 2016, parasitology, reproduction, distribution, diet, conservation, and taxonomy. The paper is intended to be consulted for information. In addition, we provide information on the geographic and depth distribution of newly described species, i.e. the type specimens from the year 1990- 2016 in a hot spot analysis. Please note that the content of this paper has been compiled to the best of our abilities based on current knowledge and practice, however, -
A Practical Handbook for Determining the Ages of Gulf of Mexico And
A Practical Handbook for Determining the Ages of Gulf of Mexico and Atlantic Coast Fishes THIRD EDITION GSMFC No. 300 NOVEMBER 2020 i Gulf States Marine Fisheries Commission Commissioners and Proxies ALABAMA Senator R.L. “Bret” Allain, II Chris Blankenship, Commissioner State Senator District 21 Alabama Department of Conservation Franklin, Louisiana and Natural Resources John Roussel Montgomery, Alabama Zachary, Louisiana Representative Chris Pringle Mobile, Alabama MISSISSIPPI Chris Nelson Joe Spraggins, Executive Director Bon Secour Fisheries, Inc. Mississippi Department of Marine Bon Secour, Alabama Resources Biloxi, Mississippi FLORIDA Read Hendon Eric Sutton, Executive Director USM/Gulf Coast Research Laboratory Florida Fish and Wildlife Ocean Springs, Mississippi Conservation Commission Tallahassee, Florida TEXAS Representative Jay Trumbull Carter Smith, Executive Director Tallahassee, Florida Texas Parks and Wildlife Department Austin, Texas LOUISIANA Doug Boyd Jack Montoucet, Secretary Boerne, Texas Louisiana Department of Wildlife and Fisheries Baton Rouge, Louisiana GSMFC Staff ASMFC Staff Mr. David M. Donaldson Mr. Bob Beal Executive Director Executive Director Mr. Steven J. VanderKooy Mr. Jeffrey Kipp IJF Program Coordinator Stock Assessment Scientist Ms. Debora McIntyre Dr. Kristen Anstead IJF Staff Assistant Fisheries Scientist ii A Practical Handbook for Determining the Ages of Gulf of Mexico and Atlantic Coast Fishes Third Edition Edited by Steve VanderKooy Jessica Carroll Scott Elzey Jessica Gilmore Jeffrey Kipp Gulf States Marine Fisheries Commission 2404 Government St Ocean Springs, MS 39564 and Atlantic States Marine Fisheries Commission 1050 N. Highland Street Suite 200 A-N Arlington, VA 22201 Publication Number 300 November 2020 A publication of the Gulf States Marine Fisheries Commission pursuant to National Oceanic and Atmospheric Administration Award Number NA15NMF4070076 and NA15NMF4720399. -
Genomic Insights of Body Plan Transitions from Bilateral to Pentameral Symmetry in Echinoderms
ARTICLE https://doi.org/10.1038/s42003-020-1091-1 OPEN Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms Yongxin Li1, Akihito Omori 2, Rachel L. Flores3, Sheri Satterfield3, Christine Nguyen3, Tatsuya Ota 4, Toko Tsurugaya5, Tetsuro Ikuta6,7, Kazuho Ikeo4, Mani Kikuchi8, Jason C. K. Leong9, Adrian Reich 10, Meng Hao1, Wenting Wan1, Yang Dong 11, Yaondong Ren1, Si Zhang12, Tao Zeng 12, Masahiro Uesaka13, 1234567890():,; Yui Uchida9,14, Xueyan Li 1, Tomoko F. Shibata9, Takahiro Bino15, Kota Ogawa16, Shuji Shigenobu 15, Mariko Kondo 9, Fayou Wang12, Luonan Chen 12,17, Gary Wessel10, Hidetoshi Saiga7,9,18, ✉ ✉ R. Andrew Cameron 19, Brian Livingston3, Cynthia Bradham20, Wen Wang 1,21,22 & Naoki Irie 9,14,22 Echinoderms are an exceptional group of bilaterians that develop pentameral adult symmetry from a bilaterally symmetric larva. However, the genetic basis in evolution and development of this unique transformation remains to be clarified. Here we report newly sequenced genomes, developmental transcriptomes, and proteomes of diverse echinoderms including the green sea urchin (L. variegatus), a sea cucumber (A. japonicus), and with particular emphasis on a sister group of the earliest-diverged echinoderms, the feather star (A. japo- nica). We learned that the last common ancestor of echinoderms retained a well-organized Hox cluster reminiscent of the hemichordate, and had gene sets involved in endoskeleton development. Further, unlike in other animal groups, the most conserved developmental stages were not at the body plan establishing phase, and genes normally involved in bila- terality appear to function in pentameric axis development. These results enhance our understanding of the divergence of protostomes and deuterostomes almost 500 Mya. -
Checklist of Serranid and Epinephelid Fishes (Perciformes: Serranidae & Epinephelidae) of India
Journal of the Ocean Science Foundation 2021, Volume 38 Checklist of serranid and epinephelid fishes (Perciformes: Serranidae & Epinephelidae) of India AKHILESH, K.V. 1, RAJAN, P.T. 2, VINEESH, N. 3, IDREESBABU, K.K. 4, BINEESH, K.K. 5, MUKTHA, M. 6, ANULEKSHMI, C. 1, MANJEBRAYAKATH, H. 7, GLADSTON, Y. 8 & NASHAD M. 9 1 ICAR-Central Marine Fisheries Research Institute, Mumbai Regional Station, Maharashtra, India. Corresponding author: [email protected]; Email: [email protected] 2 Andaman & Nicobar Regional Centre, Zoological Survey of India, Port Blair, India. Email: [email protected] 3 Department of Health & Family Welfare, Government of West Bengal, India. Email: [email protected] 4 Department of Science and Technology, U.T. of Lakshadweep, Kavaratti, India. Email: [email protected] 5 Southern Regional Centre, Zoological Survey of India, Chennai, Tamil Nadu, India. Email: [email protected] 6 ICAR-Central Marine Fisheries Research Institute, Visakhapatnam Regional Centre, Andhra Pradesh, India. Email: [email protected] 7 Centre for Marine Living Resources and Ecology, Kochi, Kerala, India. Email: [email protected] 8 ICAR-Central Island Agricultural Research Institute, Port Blair, Andaman and Nicobar Islands, India. Email: [email protected] 9 Fishery Survey of India, Port Blair, Andaman and Nicobar Islands, 744101, India. Email: [email protected] Abstract We provide an updated checklist of fishes of the families Serranidae and Epinephelidae reported or listed from India, along with photographs. A total of 120 fishes in this group are listed as occurring in India based on published literature, of which 25 require further confirmation and validation. We confirm here the presence of at least 95 species in 22 genera occurring in Indian marine waters. -
Distribution and Movement of Chinese Sturgeon, Acipenser Sinensis, on the Spawning Ground Located Below the Gezhouba Dam During Spawning Seasons
J. Appl. Ichthyol. 22 (Suppl. 1) (2006), 145-151 Received: January 10, 2006 © 2006 Blackwell Verlag, Berlin Accepted: August 9, 2006 ISSN 0175-8659 Distribution and movement of Chinese sturgeon, Acipenser sinensis, on the spawning ground located below the Gezhouba Dam during spawning seasons By D. Yang1,3, B. Kynard2, Q. Wei1,3, X. Chen1,3, W. Zheng1 and H. Du1,3 1Key Laboratory of Freshwater Fish Germplasm Resources and Biotechnology, the Ministry of Agriculture of PRC. Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Jinzhou 434000, China; 2Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Wuxi 214081, China; 3S. C. Anadromous Fish Research Center, US Geological Service, MA 01376 USA Summary estuary to begin their upstream spawning migration as maturing adults. The age of females and males at this stage is commonly Sonic tracking of 40 adult pre-spawning Chinese sturgeons (35 above 14 years and 9 years, respectively. Migrating spawners usu- females, 5 males) was done during 8 spawning seasons (1996– ally arrive at the spawning ground about 18 months after starting 2004). Fish spent most of the time close to the dam (within 7 km). the upstream migration. Their gonads develop from stage III into A yearly mean of 64% of the tracking locations of pre-spawners stage IV during the upstream migration (Anonymous. 1988; were in the small area of 1.08 km distance below the dam (cell I-B Chang, 1999). The range of their spawning ground locations before of the tracking grid system). These movements indicate fish con- the construction of the Gezhouba Dam reached from the Maoshui tinue to attempt to move farther upstream to pass the dam. -
Pallid Sturgeon Recovery Plan (Recovery Plan)
PALLID STURGEON coRE VERYPMN Recovery Plan for the Pallid Sturgeon (Scaphirhynchus a/bus) Prepared by the Pallid Sturgeon Recovery Team Principal Authors Mark P. Dryer, Leader U.S. Fish and Wildlife Service Ecological Services 1500 Capitol Avenue Bismarck, ND 58501 and Alan J. Sandvol U.S. Fish and Wildlife Service Fisheries and Federal Aid 1500 Capitol Avenue Bismarck, ND 58501 for Region 6 U.S. Fish and Wildlife Service Denver, Colorado / Approved: Re~5l i rector Date TABLE OF CONTENTS TITLE PAGE RECOVERY BACKGROUND AND STRATEGY iii PALLID STURGEON RECOVERY TEAM iv DISCLAIMER V ACKNOWLEDGEMENTS vi EXECUTIVE SUMMARY vii Part I INTRODUCTION 1 History 1 General Description 1 Historical Distribution and Abundance 3 Present Distribution and Abundance 5 Habitat Preference 5 Current Velocity 7 Turbidity 8 Water Depth 8 Substrate 8 Temperature 8 Life History 8 Reproductive Biology 8 Food and Feeding Habits 9 Age and Growth 10 Reasons for Decline 10 Habitat Loss 10 Commercial Harvest 13 Pall uti on/Contami nants 14 Hybridization 14 Part II RECOVERY 16 Recovery Objectives and Criteria 16 Recovery—Priority Management Areas 16 Recovery Outline 19 24 Recovery Outline Narrative . LITERATURE CITED 42 Part III IMPLEMENTATION SCHEDULE 46 FIGURES NO. PAGE 1. Comparative Diagrams of the Ventral Surface of the Head of Shovelnose Sturgeon and Pallid Sturgeon, Showing Several Measurement Ratios of Value for Identification 2 2. Historic Range of Pallid Sturgeon 4 3. Recent Occurrence of Pallid Sturgeon 6 4. Recovery—Priority Management Areas 18 RECOVERY BACKGROUND AND STRATEGY The pallid sturgeon (Scaphirhynchus albus Forbes and Richardson) was listed as an endangered species on September 6, 1990 (55 FR 36641) pursuant to the Endangered Species Act (Act) of 1973 (16 U.S.C. -
Rockfish Population Slowly on the Rise
West Coast rockfish Rockfish population slowly on the rise Above: Rockfish in a kelp forest. Right: Black rockfish. Inset: Juvenile rockfish. More than 60 species of rockfi sh dwell in ocean perch, and canary. These species are of- schooling rockfi sh. vast numbers in the Eastern Pacifi c Ocean fi cially “overfi shed,” a designation which the When you’ve got a permit for hake, you’re from Baja to Alaska. White-fl eshed and deli- council grants when a fi sh’s population drops geared up for hake, you’re fi shing for hake, cious, they frequently school together and to 25 percent of its estimated virgin level, and and you know there is a hell of a lot of hake often intermingle with other commercially a stock is not considered “recovered” until it around, nothing stinks so much as scooping sought fi shes — but seven members of the ge- has climbed back up to the 40-percent mark. up a school of lousy rockfi sh — especially nus Sebastes have spoiled the party. These guidelines were devised and written ones protected by strict bycatch limits. Actually, it was fi shermen, who harvested into policy in 1998 as part of the Fishery Man- The fl eet may have dozens of tonnes of hake them nearly to economic extinction last centu- agement Plan. Since then, two species have as- left uncaught in the quota but must stop be- ry, and this handful of species is now largely cended back to the 40 percent level and been cause the rockfi sh cap has been exceeded. -
UNEP/CMS/COP13/Doc.28.2.9 MIGRATORY 24 September 2019
CONVENTION ON UNEP/CMS/COP13/Doc.28.2.9 MIGRATORY 24 September 2019 SPECIES Original: English 13th MEETING OF THE CONFERENCE OF THE PARTIES Gandhinagar, India, 17 - 22 February 2020 Agenda Item 28.2 PROPOSAL FOR A CONCERTED ACTION FOR THE COMMON GUITARFISH (Rhinobatos rhinobatos) AND BOTTLENOSE WEDGEFISH (Rhynchobatus australiae) ALREADY ON APPENDIX II OF THE CONVENTION, AND THE FAMILIES RHINOBATIDAE AND GLAUCOSTEGIDAE Summary: The IUCN Shark Specialist Group has submitted the attached proposal for a Concerted Action for the Common Guitarfish (Rhinobatos rhinobatos) and Bottlenose Wedgefish (Rhynchobatus australiae), in accordance with the process elaborated in Resolution 12.28. In addition to the aforementioned CMS-listed species, the families Rhinobatidae, Rhinidae and Glaucostegidae are proposed for Concerted Action because of their similar conservation needs. *The geographical designations employed in this document do not imply the expression of any opinion whatsoever on the part of the CMS Secretariat (or the United Nations Environment Programme) concerning the legal status of any country, territory, or area, or concerning the delimitation of its frontiers or boundaries. The responsibility for the contents of the document rests exclusively with its author UNEP/CMS/COP13/Doc.28.2.9 PROPOSAL FOR A CONCERTED ACTION FOR THE COMMON GUITARFISH (Rhinobatos rhinobatos) AND BOTTLENOSE WEDGEFISH (Rhynchobatus australiae) ALREADY ON APPENDIX II OF THE CONVENTION, AND THE FAMILIES RHINOBATIDAE AND GLAUCOSTEGIDAE (i). Proponent: International Union For Conservation of Nature - IUCN Species Survival Commission’s Shark Specialist Group (IUCN SSG) The IUCN SSG has long been a trusted source of science-based information and advice on sharks and their relatives (Class Chondrichthyes: sharks, rays, and chimaeras) and provides leadership for the conservation of threatened species and populations of all chondrichthyan fishes. -
Atlantic Halibut of the Gulf of St. Lawrence (Divisions 4RST)
Fisheries and Oceans Pêches et Océans Canada Canada Science Sciences DFO Science Laurentian Region Stock Status Report A4-02 (2000) 52 3K Québec 50 4S 4R Terre-Neuve Québec 48 4T 3L Nouveau-Brunswick 3Pn 4Vn 3Ps Atlantic Halibut of the Gulf of 46 St. Lawrence (Divisions 4RST) 44 Background The Atlantic halibut of divisions 4RST can be found 4X 4W 4Vs 3O 42 throughout the Estuary and Gulf of St. Lawrence. In the 70 68 66 64 62 60 58 56 54 52 northern Gulf, they are more abundant in the Esquiman, Laurentian and Anticosti channels, at depths of 200 m and over. In the southern Gulf, the highest concentrations are Figure 1. Map of the Gulf of St. Lawrence and found in shallower water (less than 100 m) near the Miscou adjacent regions showing NAFO divisions 4RST. Bank, north of Prince Edward Island, northwest of Cape Breton Island and around the Magdalen Islands. This species grows fast and continuously, at a mean rate of Summary about 7.5–8.5 cm per year (Figure 2). The growth rate for • Since 1995, mean annual landings of males and females is comparable, although female halibut reach a larger maximum size than males. Based on Atlantic halibut have been around 275 t, observations made during scientific trawl surveys twice the mean annual landings for conducted in January and May, it appears that the Gulf 1992–95 (135 t), but comparable to those halibut is able to spawn during those periods. of the late 1980s. They are still well The high landings of Atlantic halibut made during the first below the values of 1000 t and over half of the 20th century indicate that the Gulf stock was regularly recorded during the first half of under very strong fishing pressure at the time. -
Fixed Gear Recommendations for the Cumberland Sound Greenland Halibut Fishery
Canadian Science Advisory Secretariat Central and Arctic Region Science Response 2008/011 FIXED GEAR RECOMMENDATIONS FOR THE CUMBERLAND SOUND GREENLAND HALIBUT FISHERY Context In a letter dated March 14, 2008, the Nunavut Wildlife Management Board (NWMB) requested Fisheries and Oceans Canada (DFO) Science advice on ways Greenland halibut fishing could be conducted in Cumberland Sound such that conservation concerns with non-directed by- catch of marine mammals and Greenland sharks are minimized or alleviated. On March 31, 2008, Fisheries and Aquaculture Management (FAM) submitted a request to Science for advice to address this request. Given the response was needed prior to the open-water fishing season (July 2008) and since the NWMB is the final advisory body for this request, DFO Central and Arctic Science determined that a Special Science Response Process would be used. Background The Cumberland Sound Greenland halibut (turbot) fishery began in 1986 and has been traditionally exploited during the winter months using longline gear set on the bottom through holes cut in the ice. Fishing typically takes place along a deep trench (>500 m) that extends toward Imigen Island and Drum Islands (Fig. 1). In 2005, a new management zone was established in Cumberland Sound with a Total Allowable Catch (TAC) of 500 t separate from the Northwest Atlantic Fisheries Organization (NAFO) Division 0B TAC. Catches in the winter fishery peaked in 1992 at 430 t then declined to levels below 100 t through the late 1990s and peaked again at 245 t in 2003. However, in recent years catches have declined significantly with harvests of 9 t, 70 t and 3 t for 2005, 2006 and 2007 respectively.