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Cryptic Phylogeographic History Sheds Light on the Generation of Species Diversity in Sky-Island Mountains
bioRxiv preprint doi: https://doi.org/10.1101/199786; this version posted October 7, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Cryptic phylogeographic history sheds light on the generation of species diversity in sky-island mountains Kai He1, 2, 3, #, Tao Wan 1, 4, Klaus-Peter Koepfli 5, 6, Wei Jin7, Shao-Ying Liu7, Xue-Long Jiang1, # 1 State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650223, China 2 Department of Biological Sciences, University of Manitoba, Winnipeg, MN R3T R3V, Canada 3 The Kyoto University Museum, Kyoto University, Kyoto 606-8501, Japan. 4 Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan 650223, China 5 Smithsonian Conservation Biology Institute, National Zoological Park, DC 20008, USA 6 Theodosius Dobzhansky Center for Genome Bioinformatics, Saint Petersburg State University, St. Petersburg 199034, RUSSIA 7 Sichuan Academy of Forest, Chengdu 610081, Sichuan, China Keywords: allopatry, Approximate Bayesian Computation, cryptic corridor, interglacial refugia, niche modeling, species delimitation Running title: Cryptic sky-island phylogeography # Correspondence: Kai He and Xue-Long Jiang, Fax: 86 871 6512 5226; E-mails: [email protected], [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/199786; this version posted October 7, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Uropsilus, Talpidae): Implications for Taxonomy and Conservation Tao Wan1,2†, Kai He1,3† and Xue-Long Jiang1*
Wan et al. BMC Evolutionary Biology 2013, 13:232 http://www.biomedcentral.com/1471-2148/13/232 RESEARCH ARTICLE Open Access Multilocus phylogeny and cryptic diversity in Asian shrew-like moles (Uropsilus, Talpidae): implications for taxonomy and conservation Tao Wan1,2†, Kai He1,3† and Xue-Long Jiang1* Abstract Background: The genus Uropsilus comprises a group of terrestrial, montane mammals endemic to the Hengduan and adjacent mountains. These animals are the most primitive living talpids. The taxonomy has been primarily based on cursory morphological comparisons and the evolutionary affinities are little known. To provide insight into the systematics of this group, we estimated the first multi-locus phylogeny and conducted species delimitation, including taxon sampling throughout their distribution range. Results: We obtained two mitochondrial genes (~1, 985 bp) and eight nuclear genes (~4, 345 bp) from 56 specimens. Ten distinct evolutionary lineages were recovered from the three recognized species, eight of which were recognized as species/putative species. Five of these putative species were found to be masquerading as the gracile shrew mole. The divergence time estimation results indicated that climate change since the last Miocene and the uplift of the Himalayas may have resulted in the diversification and speciation of Uropsilus. Conclusions: The cryptic diversity found in this study indicated that the number of species is strongly underestimated under the current taxonomy. Two synonyms of gracilis (atronates and nivatus) should be given full species status, and the taxonomic status of another three potential species should be evaluated using extensive taxon sampling, comprehensive morphological, and morphometric approaches. Consequently, the conservation status of Uropsilus spp. -
Convergent Evolution of Olfactory and Thermoregulatory Capacities in Small Amphibious Mammals
Convergent evolution of olfactory and thermoregulatory capacities in small amphibious mammals Quentin Martineza,1, Julien Clavelb,c, Jacob A. Esselstynd,e, Anang S. Achmadif, Camille Grohég,h, Nelly Piroti,j, and Pierre-Henri Fabrea,k aInstitut des Sciences de l’Évolution de Montpellier (ISEM), CNRS, Institut de recherche pour le développement (IRD), Université de Montpellier (UM), UMR 5554, 34095 Montpellier, France; bDepartment of Life Sciences, The Natural History Museum, SW7 5DB London, United Kingdom; cUniv. Lyon Laboratoire d’Ecologie des Hydrosystèmes Naturels et Anthropisés, UMR CNRS 5023, Université Claude Bernard Lyon 1, École Nationale des Travaux Publics de l’État (ENTPE), F‐69622 Villeurbanne, Cedex, France; dMuseum of Natural Science, Louisiana State University, Baton Rouge, LA 70803; eDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803; fMuseum Zoologicum Bogoriense, Research Center for Biology, Indonesian Institute of Sciences (LIPI), 16911 Cibinong, Indonesia; gDivision of Paleontology, American Museum of Natural History, New York, NY 10024; hLaboratoire Paléontologie Évolution Paléoécosystèmes Paléoprimatologie (PALEVOPRIM, UMR 7262, CNRS-Institut écologie et environnement [INEE]), Université de Poitiers, 86073 Poitiers, Cedex 9, France; iInstitut de Recherche en Cancérologie de Montpellier (IRCM), INSERM, U1194 UM, Institut du Cancer de Montpellier (ICM), F-34298 Montpellier, Cedex 5, France; jRéseau d’Histologie Expérimentale de Montpellier, UMS3426 CNRS-US009 INSERM-UM, 34298 Montpellier, France; and kMammal Section, Department of Life Sciences, The Natural History Museum, SW7 5DB London, United Kingdom Edited by David B. Wake, University of California, Berkeley, CA, and approved February 28, 2020 (received for review October 11, 2019) Olfaction and thermoregulation are key functions for mammals. The partitioning has been documented in histological, airflow dynamic, former is critical to feeding, mating, and predator avoidance behaviors, and performance test studies (9–13). -
Mitogenome of a Cryptic Species Within Uropsilus and Divergence Time Estimation
Mitochondrial DNA Part B Resources ISSN: (Print) 2380-2359 (Online) Journal homepage: http://www.tandfonline.com/loi/tmdn20 Mitogenome of a cryptic species within Uropsilus and divergence time estimation Yu Xu, Yunting Hu & Feiyun Tu To cite this article: Yu Xu, Yunting Hu & Feiyun Tu (2017) Mitogenome of a cryptic species within Uropsilus and divergence time estimation, Mitochondrial DNA Part B, 2:2, 685-686, DOI: 10.3109/19401736.2015.1060440 To link to this article: https://doi.org/10.3109/19401736.2015.1060440 © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. View supplementary material Published online: 19 Oct 2017. Submit your article to this journal Article views: 28 View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=tmdn20 Download by: [191.101.87.60] Date: 27 December 2017, At: 09:37 MITOCHONDRIAL DNA PART B: RESOURCES, 2017 VOL. 2, NO. 2, 685–686 https://doi.org/10.3109/19401736.2015.1060440 MITOGENOME ANNOUNCEMENT Mitogenome of a cryptic species within Uropsilus and divergence time estimation Yu Xua, Yunting Hub and Feiyun Tuc aSchool of Life Sciences, Guizhou Normal University, Guiyang, China; bGuizhou Normal University Library, Guizhou Normal University, Guiyang, China; cInstitute of Wildlife Conservation, Jiangxi Academy of Forestry, Nanchang, China ABSTRACT ARTICLE HISTORY Uropsilus sp. 4 is a new cryptic species, collected in Changyang county, Hubei province, China. In this Received 20 May 2015 study, the whole mitochondrial genome of Uropsilus sp. 4 was first determined and characterized. The Accepted 6 June 2015 genome is 16,542 bp in length, containing 13 protein coding genes, 22 transfer RNA genes, two riboso- KEYWORDS mal RNA genes, and a putative control region. -
Abyssinian Owl on Mt Kenya Dependent on Declining Heath Forest Habitat?
Final Project Report to the African Bird Club Is the Abyssinian Owl on Mt Kenya dependent on declining heath forest habitat? Clockwise from top left: 1) Abyssinian Owl in Ethiopia (photo courtesy of M. Piazzi), 2) D. Ogada and P. Muriithi collecting a pellet, 3) L-R: P. Muriithi, D. Ogada, P. Wairasho and K. Ngari beginning the climb up Mt Kenya, 4) Heath forest habitat on Mt Kenya Darcy Ogada The Peregrine Fund and Paul Muriithi Kenya Wildlife Service Training Institute June 2017 Summary The Abyssinian Owl (Asio abyssinicus) is a secretive and very little known owl that is endemic to mountainous regions of eastern Africa (Ethiopia, Uganda, Kenya and Democratic Republic of Congo). The last confirmed record on Mt Kenya was in 1961, although one individual is regularly seen in Bale Mountains National Park, Ethiopia. We unsuccessfully attempted to re-confirm its presence on Mt Kenya during 82 days spent on the mountain and 30 trap months of camera trapping. Despite this, we believe the owl remains extant on Mt Kenya as four brief owl sightings made by this team during 2015 were thought to be of this species and therefore we view the results presented in this report as preliminary. We found one frequently used owl roost in heath habitat (that we are yet to link conclusively to this species) and from where the majority of 38 owl pellets collected during this study were found. Prey remains identified from pellets were within the average prey sizes identified for this species in Ethiopia. We trapped small mammals in heath and Hagenia forest habitats over a total of 2,640 trap nights. -
Molecular Phylogenetics of Shrews (Mammalia: Soricidae) Reveal Timing of Transcontinental Colonizations
Molecular Phylogenetics and Evolution 44 (2007) 126–137 www.elsevier.com/locate/ympev Molecular phylogenetics of shrews (Mammalia: Soricidae) reveal timing of transcontinental colonizations Sylvain Dubey a,*, Nicolas Salamin a, Satoshi D. Ohdachi b, Patrick Barrie`re c, Peter Vogel a a Department of Ecology and Evolution, University of Lausanne, CH-1015 Lausanne, Switzerland b Institute of Low Temperature Science, Hokkaido University, Sapporo 060-0819, Japan c Laboratoire Ecobio UMR 6553, CNRS, Universite´ de Rennes 1, Station Biologique, F-35380, Paimpont, France Received 4 July 2006; revised 8 November 2006; accepted 7 December 2006 Available online 19 December 2006 Abstract We sequenced 2167 base pairs (bp) of mitochondrial DNA cytochrome b and 16S, and 1390 bp of nuclear genes BRCA1 and ApoB in shrews taxa (Eulipotyphla, family Soricidae). The aim was to study the relationships at higher taxonomic levels within this family, and in particular the position of difficult clades such as Anourosorex and Myosorex. The data confirmed two monophyletic subfamilies, Soric- inae and Crocidurinae. In the former, the tribes Anourosoricini, Blarinini, Nectogalini, Notiosoricini, and Soricini were supported. The latter was formed by the tribes Myosoricini and Crocidurini. The genus Suncus appeared to be paraphyletic and included Sylvisorex.We further suggest a biogeographical hypothesis, which shows that North America was colonized by three independent lineages of Soricinae during middle Miocene. Our hypothesis is congruent with the first fossil records for these taxa. Using molecular dating, the first exchang- es between Africa and Eurasia occurred during the middle Miocene. The last one took place in the Late Miocene, with the dispersion of the genus Crocidura through the old world. -
Alexis Museum Loan NM
STANFORD UNIVERSITY STANFORD, CALIFORNIA 94305-5020 DEPARTMENT OF BIOLOGY PH. 650.725.2655 371 Serrra Mall FAX 650.723.0589 http://www.stanford.edu/group/hadlylab/ [email protected] 4/26/13 Joseph A. Cook Division of Mammals The Museum of Southwestern Biology at the University of New Mexico Dear Joe: I am writing on behalf of my graduate student, Alexis Mychajliw and her collaborator, Nat Clarke, to request the sampling of museum specimens (tissue, skins, skeletons) for DNA extraction for use in our study on the evolution of venom genes within Eulipotyphlan mammals. Please find included in this request the catalogue numbers of the desired specimens, as well as a summary of the project in which they will be used. We have prioritized the use of frozen or ethanol preserved tissues to avoid the destruction of museum skins, and seek tissue samples from other museums if only skins are available for a species at MSB. The Hadly lab has extensive experience in the non-destructive sampling of specimens for genetic analyses. Thank you for your consideration and assistance with our research. Please contact Alexis ([email protected]) with any questions or concerns regarding our project or sampling protocols, or for any additional information necessary for your decision and the processing of this request. Alexis is a first-year student in my laboratory at Stanford and her project outline is attached. As we are located at Stanford University, we are unable to personally pick up loan materials from the MSB. We request that you ship materials to us in ethanol or buffer. -
Cryptic Diversity in Forest Shrews of the Genus Myosorex from Southern Africa, with the Description of a New Species and Comments on Myosorex Tenuis
bs_bs_banner Zoological Journal of the Linnean Society, 2013, 169, 881–902. With 7 figures Cryptic diversity in forest shrews of the genus Myosorex from southern Africa, with the description of a new species and comments on Myosorex tenuis PETER JOHN TAYLOR1,2*, TERESA CATHERINE KEARNEY3, JULIAN C. KERBIS PETERHANS4,5, RODERICK M. BAXTER6 and SANDI WILLOWS-MUNRO2 1SARChI Chair on Biodiversity Value & Change in the Vhembe Biosphere Reserve & Core Member of Centre for Invasion Biology, School of Mathematical & Natural Sciences, University of Venda, P. Bag X5050, Thohoyandou, 0950, South Africa 2School of Life Science, University of KwaZulu-Natal, Durban and Pietermaritzburg, South Africa 3Department of Vertebrates, Small Mammals Section, Ditsong National Museum of Natural History (formerly Transvaal Museum), P.O. Box 413, Pretoria, 0001 South Africa 4University College, Roosevelt University, 430 South Michigan Avenue, Chicago, IL 60605, USA 5Department of Zoology, Field Museum of Natural History, 1400 Lake Shore Drive, Chicago, IL 60605, USA 6Department of Ecology & Resource Management, School of Environmental Sciences, University of Venda, P. Bag X5050, Thohoyandou 0950, South Africa Received 31 March 2013; revised 19 August 2013; accepted for publication 19 August 2013 Forest or mouse shrews (Myosorex) represent a small but important radiation of African shrews generally adapted to montane and/or temperate conditions. The status of populations from Zimbabwe, Mozambique, and the north of South Africa has long been unclear because of the variability of traits that have traditionally been ‘diagnostic’ for the currently recognized South African taxa. We report molecular (mitochondrial DNA and nuclear DNA), craniometric, and morphological data from newly collected series of Myosorex from Zimbabwe (East Highlands), Mozambique (Mount Gorogonsa, Gorongosa National Park), and the Limpopo Province of South Africa (Soutpansberg Range) in the context of the available museum collections from southern and eastern Africa and published DNA sequences. -
Musarañas Del Género Cryptotis
Boletín de la Sociedad Geológica Mexicana / 2017 / 421 Musarañas del género Cryptotis (Eulipotyphla: Soricidae) en el Pleistoceno Tardío de los Andes Ecuatorianos Pablo A. Moreno Cárdenas, José Luis Román-Carrión RESUMEN Pablo A. Moreno Cárdenas RESUMEN ABSTRACT [email protected] Mastozoología del Instituto Nacional de Biodibersidad (MECN). Pasaje Rumipamba Durante una excavación paleontológica en During a paleontological excavation in 341 y Av. de los Shyris. Código Postal 170515. la Quebrada Chalán, provincia de Chim- Chalán Gorge (Chimborazo province), some borazo, se registraron cinco fémures, cuatro Quito - Ecuador. fossil of micromammals where registered, Mastozoología del Instituto de Ciencias húmeros, ocho huesos pélvicos, dos incisivos Biológicas de la Escuela Politécnica Nacional superiores y un fragmento de maxilar de including, five femurs, four humerus, eight (MEPN). Avenida Ladrón de Guevara E-11 Cryptotis, con las siguientes piezas dentarias: pelvic bones and a fragment of maxilla of 253 e Isabel la Católica. Apartado 17-01- P4, M1 y M2. Los fósiles fueron colectados Cryptotis, with P4, M1 and M2 dental 2759. Quito - Ecuador. en los niveles superiores de la Formación pieces. The fossils where collected in high- Cangagua asignada al pleistoceno superior. er levels of cangagua formation of upper José Luis Román-Carrión En la fase de análisis se tomaron nueve me- Sección de Paleontología del Instituto de didas de los húmeros y los fémures compa- pleistocene. Nine measures of humerus and Ciencias Biológicas de la Escuela Politécnica rándose con los de las especies ecuatorianas femurs fossil where obtained, and compared Nacional (MEPN). Avenida Ladrón de Gue- actuales. Los fósiles fueron asignados a la with the current Ecuadorian species. -
Talpid Mole Phylogeny Unites Shrew Moles and Illuminates Overlooked Cryptic Species Diversity Kai He,‡,†,1,2 Akio Shinohara,†,3 Kristofer M
Talpid Mole Phylogeny Unites Shrew Moles and Illuminates Overlooked Cryptic Species Diversity Kai He,‡,†,1,2 Akio Shinohara,†,3 Kristofer M. Helgen,4 Mark S. Springer,5 Xue-Long Jiang,*,1 and Kevin L. Campbell*,2 1State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China 2Department of Biological Sciences, University of Manitoba, Winnipeg, MN , Canada 3Department of Bio-resources, Division of Biotechnology, Frontier Science Research Center, University of Miyazaki, Miyazaki, Japan 4National Museum of Natural History Smithsonian Institution, Washington, DC 5Department of Biology, University of California, Riverside, CA ‡Present address: The Kyoto University Museum, Kyoto University, Kyoto, Japan †These authors contributed equally to this work. *Corresponding authors: E-mails: [email protected]; [email protected] Associate editor: Emma Teeling Abstract The mammalian family Talpidae (moles, shrew moles, desmans) is characterized by diverse ecomorphologies associated with terrestrial, semi-aquatic, semi-fossorial, fossorial, and aquatic-fossorial lifestyles. Prominent specializations involved with these different lifestyles, and the transitions between them, pose outstanding questions regarding the evolutionary history within the family, not only for living but also for fossil taxa. Here, we investigate the phylogenetic relationships, divergence times, and biogeographic history of the family using 19 nuclear and 2 mitochondrial genes (16 kb) from 60% of described species representing all 17 genera. Our phylogenetic analyses help settle classical questions in the evolution of moles, identify an ancient (mid-Miocene) split within the monotypic genus Scaptonyx, and indicate that talpid species richness may be nearly 30% higher than previously recognized. Our results also uniformly support the monophyly of long-tailed moles with the two shrew mole tribes and confirm that the Gansu mole is the sole living Asian member of an otherwise North American radiation. -
2014 Annual Reports of the Trustees, Standing Committees, Affiliates, and Ombudspersons
American Society of Mammalogists Annual Reports of the Trustees, Standing Committees, Affiliates, and Ombudspersons 94th Annual Meeting Renaissance Convention Center Hotel Oklahoma City, Oklahoma 6-10 June 2014 1 Table of Contents I. Secretary-Treasurers Report ....................................................................................................... 3 II. ASM Board of Trustees ............................................................................................................ 10 III. Standing Committees .............................................................................................................. 12 Animal Care and Use Committee .......................................................................... 12 Archives Committee ............................................................................................... 14 Checklist Committee .............................................................................................. 15 Conservation Committee ....................................................................................... 17 Conservation Awards Committee .......................................................................... 18 Coordination Committee ....................................................................................... 19 Development Committee ........................................................................................ 20 Education and Graduate Students Committee ....................................................... 22 Grants-in-Aid Committee -
Kerbis Peterhans, J.C., R. Hutterer, J. Mwanga, B. Ndara, L
Journal of East African Natural History 99(2): 103–128 (2010) AFRICAN SHREWS ENDEMIC TO THE ALBERTINE RIFT: TWO NEW SPECIES OF MYOSOREX (MAMMALIA: SORICIDAE) FROM BURUNDI AND THE DEMOCRATIC REPUBLIC OF CONGO Julian C. Kerbis Peterhans College of Professional Studies, Roosevelt University, 430 S. Michigan Avenue, Chicago, IL 60605, USA & Department of Zoology, Field Museum of Natural History, Chicago, IL 60605, USA [email protected] Rainer Hutterer Zoologisches Forschungsmuseum Alexander Koenig Adenauerallee 160, 53113 Bonn, Germany [email protected] Jacques Mwanga, Benjamin Ndara Département de Biologie, Centre de Recherche en Sciences Naturelles (CRSN)/Lwiro B.P. 147, Cyangugu, Rwanda [email protected], [email protected] Leif Davenport United States Peace Corps 2040 Antananarivo Place, Dulles, VA 20189, USA [email protected] Innocent Balagizi Karhagomba Organisation pour la Conservation Environnementale au Kivu (D.R. Congo) B.P. 388, Cyangugu, Rwanda [email protected] Jay Udelhoven The Nature Conservancy, Global Marine Team 1917 First Avenue, Seattle, WA 98101, USA [email protected] ABSTRACT The genus Myosorex has a classic relict distribution within sub-Saharan Africa. Montane populations in eastern and western equatorial Africa are separated by ca. 2900 km. Until this study, the closest known populations in southern Africa were separated by nearly 2000 km from the closest populations in the Albertine 104 J. Kerbis Peterhans, R. Hutterer, J. Mwanga, B. Ndara, L. Davenport, I. Karhagomba & J. Udelhoven Rift Valley. Here we document previously unknown populations of Myosorex, representing two new endemic taxa from montane forests adjacent to the Albertine Rift. In conjunction with additional data from Malawi, we fill in major gaps in our knowledge of the biodiversity and distribution of this genus in the areas of the Albertine and Malawi Rift Valleys.