Scapanulus Oweni): Further Evidence for Karyotypic Stability in Talpid
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Cryptic Phylogeographic History Sheds Light on the Generation of Species Diversity in Sky-Island Mountains
bioRxiv preprint doi: https://doi.org/10.1101/199786; this version posted October 7, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Cryptic phylogeographic history sheds light on the generation of species diversity in sky-island mountains Kai He1, 2, 3, #, Tao Wan 1, 4, Klaus-Peter Koepfli 5, 6, Wei Jin7, Shao-Ying Liu7, Xue-Long Jiang1, # 1 State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650223, China 2 Department of Biological Sciences, University of Manitoba, Winnipeg, MN R3T R3V, Canada 3 The Kyoto University Museum, Kyoto University, Kyoto 606-8501, Japan. 4 Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan 650223, China 5 Smithsonian Conservation Biology Institute, National Zoological Park, DC 20008, USA 6 Theodosius Dobzhansky Center for Genome Bioinformatics, Saint Petersburg State University, St. Petersburg 199034, RUSSIA 7 Sichuan Academy of Forest, Chengdu 610081, Sichuan, China Keywords: allopatry, Approximate Bayesian Computation, cryptic corridor, interglacial refugia, niche modeling, species delimitation Running title: Cryptic sky-island phylogeography # Correspondence: Kai He and Xue-Long Jiang, Fax: 86 871 6512 5226; E-mails: [email protected], [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/199786; this version posted October 7, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Special Publications Museum of Texas Tech University Number 63 18 September 2014
Special Publications Museum of Texas Tech University Number 63 18 September 2014 List of Recent Land Mammals of Mexico, 2014 José Ramírez-Pulido, Noé González-Ruiz, Alfred L. Gardner, and Joaquín Arroyo-Cabrales.0 Front cover: Image of the cover of Nova Plantarvm, Animalivm et Mineralivm Mexicanorvm Historia, by Francisci Hernández et al. (1651), which included the first list of the mammals found in Mexico. Cover image courtesy of the John Carter Brown Library at Brown University. SPECIAL PUBLICATIONS Museum of Texas Tech University Number 63 List of Recent Land Mammals of Mexico, 2014 JOSÉ RAMÍREZ-PULIDO, NOÉ GONZÁLEZ-RUIZ, ALFRED L. GARDNER, AND JOAQUÍN ARROYO-CABRALES Layout and Design: Lisa Bradley Cover Design: Image courtesy of the John Carter Brown Library at Brown University Production Editor: Lisa Bradley Copyright 2014, Museum of Texas Tech University This publication is available free of charge in PDF format from the website of the Natural Sciences Research Laboratory, Museum of Texas Tech University (nsrl.ttu.edu). The authors and the Museum of Texas Tech University hereby grant permission to interested parties to download or print this publication for personal or educational (not for profit) use. Re-publication of any part of this paper in other works is not permitted without prior written permission of the Museum of Texas Tech University. This book was set in Times New Roman and printed on acid-free paper that meets the guidelines for per- manence and durability of the Committee on Production Guidelines for Book Longevity of the Council on Library Resources. Printed: 18 September 2014 Library of Congress Cataloging-in-Publication Data Special Publications of the Museum of Texas Tech University, Number 63 Series Editor: Robert J. -
Uropsilus, Talpidae): Implications for Taxonomy and Conservation Tao Wan1,2†, Kai He1,3† and Xue-Long Jiang1*
Wan et al. BMC Evolutionary Biology 2013, 13:232 http://www.biomedcentral.com/1471-2148/13/232 RESEARCH ARTICLE Open Access Multilocus phylogeny and cryptic diversity in Asian shrew-like moles (Uropsilus, Talpidae): implications for taxonomy and conservation Tao Wan1,2†, Kai He1,3† and Xue-Long Jiang1* Abstract Background: The genus Uropsilus comprises a group of terrestrial, montane mammals endemic to the Hengduan and adjacent mountains. These animals are the most primitive living talpids. The taxonomy has been primarily based on cursory morphological comparisons and the evolutionary affinities are little known. To provide insight into the systematics of this group, we estimated the first multi-locus phylogeny and conducted species delimitation, including taxon sampling throughout their distribution range. Results: We obtained two mitochondrial genes (~1, 985 bp) and eight nuclear genes (~4, 345 bp) from 56 specimens. Ten distinct evolutionary lineages were recovered from the three recognized species, eight of which were recognized as species/putative species. Five of these putative species were found to be masquerading as the gracile shrew mole. The divergence time estimation results indicated that climate change since the last Miocene and the uplift of the Himalayas may have resulted in the diversification and speciation of Uropsilus. Conclusions: The cryptic diversity found in this study indicated that the number of species is strongly underestimated under the current taxonomy. Two synonyms of gracilis (atronates and nivatus) should be given full species status, and the taxonomic status of another three potential species should be evaluated using extensive taxon sampling, comprehensive morphological, and morphometric approaches. Consequently, the conservation status of Uropsilus spp. -
Genetic and Morphologic Diversity of the Moles (Talpomorpha, Talpidae, Mogera) from the Continental Far East
Received: 15 August 2018 | Revised: 23 December 2018 | Accepted: 26 December 2018 DOI: 10.1111/jzs.12272 ORIGINAL ARTICLE Genetic and morphologic diversity of the moles (Talpomorpha, Talpidae, Mogera) from the continental Far East Elena Zemlemerova1,2 | Alexey Abramov3 | Alexey Kryukov4 | Vladimir Lebedev5 | Mi-Sook Min6 | Seo-Jin Lee6 | Anna Bannikova2 1A.N. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Abstract Moscow, Russia Taxonomy of the East Asian moles of the genus Mogera is still controversial. Based on 2 Lomonosov Moscow State University, the sequence data of 12 nuclear genes and one mitochondrial gene, we examine ge- Moscow, Russia netic variation in the Mogera wogura species complex and demonstrate that M. ro- 3Zoological Institute, Russian Academy of Sciences, Saint Petersburg, Russia busta, from the continental Far East, and M. wogura, from the Japanese Islands, are 4Federal Scientific Center of the East not conspecific. Our data do not support the existence of two or more species of Asia Terrestrial Biodiversity, Far Eastern Branch, Russian Academy of Sciences, Mogera in the Russian Far East. We suggest that the form “coreana” from the Korean Vladivostok, Russia Peninsula should be treated as a subspecies of M. robusta. Our morphological analy- 5 Zoological Museum, Lomonosov Moscow sis shows that M. r. coreana differs from typical M. robusta, from Primorye, primarily State University, Moscow, Russia in its smaller size. We show that there is strong morphological variability among con- 6Conservation Genome Resource Bank for Korean Wildlife (CGRB), Research Institute tinental moles, which may be associated with ecological and geographical factors. for Veterinary Science, College of Veterinary The time since the split between M. -
Influence of Evolutionary Allometry on Rates of Morphological Evolution and Disparity in Strictly Subterranean Moles (Talpinae, Talpidae, Lipotyphla, Mammalia)
J Mammal Evol DOI 10.1007/s10914-016-9370-9 ORIGINAL PAPER Influence of Evolutionary Allometry on Rates of Morphological Evolution and Disparity in strictly Subterranean Moles (Talpinae, Talpidae, Lipotyphla, Mammalia) G. Sansalone1,2,3 & P. Colangelo 2,4 & T. Kotsakis1,2 & A. Loy2,5 & R. Castiglia6 & A. A. Bannikova7 & E. D. Zemlemerova7 & P. Piras8,9 # Springer Science+Business Media New York 2017 Abstract The adaptation to a particular function could di- size variables. Evolutionary allometric trajectories exhibited rectly influence the morphological evolution of an anatomi- convergence of humeral shape between the two tribes, even cal structure as well as its rates. The humeral morphology of when controlling for phylogeny, though a significant differ- moles (subfamily Talpinae) is highly modified in response to ences in the evolutionary rates was found between the two intense burrowing and fully fossorial lifestyle. However, lit- tribes. Talpini, unlike Scalopini, seem to have reached a tle is known of the evolutionary pathways that marked its robust fossorial morphology early during their evolution, diversification in the two highly fossorial moles tribes and their shape disparity did not change, if it did not de- Talpini and Scalopini. We used two-dimensional landmark- crease, through time. Furthermore, the basal Geotrypus spp. based geometric morphometrics and comparative methods to clearly set apart from the other highly fossorial moles, understand which factors influenced the rates and patterns of exhibiting a significant acceleration of evolutionary shifts the morphological evolution of the humerus in 53 extant and toward higher degree of fossorial adaptation. Our observa- extinct species of the Talpini (22 extant plus 12 extinct) and tions support the hypothesis that the evolution of allometry Scalopini(sixextantplus13extinct)tribes,foratotalof623 may reflect a biological demand (in this case functional) that humeri. -
Convergent Evolution of Olfactory and Thermoregulatory Capacities in Small Amphibious Mammals
Convergent evolution of olfactory and thermoregulatory capacities in small amphibious mammals Quentin Martineza,1, Julien Clavelb,c, Jacob A. Esselstynd,e, Anang S. Achmadif, Camille Grohég,h, Nelly Piroti,j, and Pierre-Henri Fabrea,k aInstitut des Sciences de l’Évolution de Montpellier (ISEM), CNRS, Institut de recherche pour le développement (IRD), Université de Montpellier (UM), UMR 5554, 34095 Montpellier, France; bDepartment of Life Sciences, The Natural History Museum, SW7 5DB London, United Kingdom; cUniv. Lyon Laboratoire d’Ecologie des Hydrosystèmes Naturels et Anthropisés, UMR CNRS 5023, Université Claude Bernard Lyon 1, École Nationale des Travaux Publics de l’État (ENTPE), F‐69622 Villeurbanne, Cedex, France; dMuseum of Natural Science, Louisiana State University, Baton Rouge, LA 70803; eDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803; fMuseum Zoologicum Bogoriense, Research Center for Biology, Indonesian Institute of Sciences (LIPI), 16911 Cibinong, Indonesia; gDivision of Paleontology, American Museum of Natural History, New York, NY 10024; hLaboratoire Paléontologie Évolution Paléoécosystèmes Paléoprimatologie (PALEVOPRIM, UMR 7262, CNRS-Institut écologie et environnement [INEE]), Université de Poitiers, 86073 Poitiers, Cedex 9, France; iInstitut de Recherche en Cancérologie de Montpellier (IRCM), INSERM, U1194 UM, Institut du Cancer de Montpellier (ICM), F-34298 Montpellier, Cedex 5, France; jRéseau d’Histologie Expérimentale de Montpellier, UMS3426 CNRS-US009 INSERM-UM, 34298 Montpellier, France; and kMammal Section, Department of Life Sciences, The Natural History Museum, SW7 5DB London, United Kingdom Edited by David B. Wake, University of California, Berkeley, CA, and approved February 28, 2020 (received for review October 11, 2019) Olfaction and thermoregulation are key functions for mammals. The partitioning has been documented in histological, airflow dynamic, former is critical to feeding, mating, and predator avoidance behaviors, and performance test studies (9–13). -
Mitogenome of a Cryptic Species Within Uropsilus and Divergence Time Estimation
Mitochondrial DNA Part B Resources ISSN: (Print) 2380-2359 (Online) Journal homepage: http://www.tandfonline.com/loi/tmdn20 Mitogenome of a cryptic species within Uropsilus and divergence time estimation Yu Xu, Yunting Hu & Feiyun Tu To cite this article: Yu Xu, Yunting Hu & Feiyun Tu (2017) Mitogenome of a cryptic species within Uropsilus and divergence time estimation, Mitochondrial DNA Part B, 2:2, 685-686, DOI: 10.3109/19401736.2015.1060440 To link to this article: https://doi.org/10.3109/19401736.2015.1060440 © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. View supplementary material Published online: 19 Oct 2017. Submit your article to this journal Article views: 28 View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=tmdn20 Download by: [191.101.87.60] Date: 27 December 2017, At: 09:37 MITOCHONDRIAL DNA PART B: RESOURCES, 2017 VOL. 2, NO. 2, 685–686 https://doi.org/10.3109/19401736.2015.1060440 MITOGENOME ANNOUNCEMENT Mitogenome of a cryptic species within Uropsilus and divergence time estimation Yu Xua, Yunting Hub and Feiyun Tuc aSchool of Life Sciences, Guizhou Normal University, Guiyang, China; bGuizhou Normal University Library, Guizhou Normal University, Guiyang, China; cInstitute of Wildlife Conservation, Jiangxi Academy of Forestry, Nanchang, China ABSTRACT ARTICLE HISTORY Uropsilus sp. 4 is a new cryptic species, collected in Changyang county, Hubei province, China. In this Received 20 May 2015 study, the whole mitochondrial genome of Uropsilus sp. 4 was first determined and characterized. The Accepted 6 June 2015 genome is 16,542 bp in length, containing 13 protein coding genes, 22 transfer RNA genes, two riboso- KEYWORDS mal RNA genes, and a putative control region. -
Revision of Moles in the Genus Scapanus
THERYA, 2021, Vol. 12(2):275-281 DOI:10.12933/therya-21-1174 ISSN 2007-3364 Revision of moles in the genus Scapanus SERGIO TICUL ÁLVAREZ-CASTAÑEDA1 *, AND PATRICIA CORTES-CALVA1 1 Centro de Investigaciones Biológicas del Noroeste, Instituto Politécnico Nacional 195, CP. 23096. La Paz, Baja California Sur, México. Email: [email protected] (STA-C), [email protected] (PCC). *Corresponding author Scapanus latimanus is a species with many morphological differences among its populations. This variation is associated with multiple taxonomic changes at the species or subspecies level. This study incorporates genetic analyses and comparisons with previous morphological studies to propose a better understanding of the latimanus complex. Mitochondrial markers (cytochrome b; cytochrome c oxidase subunit I; and cytochrome c oxidase subunit III) were sequenced to construct a phylogeny for the subfamily Scalopinae in North America. Genetic dis- tances ranged from 2.49 to 10.50 % among geographic areas. Results identified three monophyletic clades with high bootstrap support values. Based on our phylogenetic analysis and previous morphological analyses, we confirm S. anthonyi from San Pedro Mártir as a valid species and propose that S. occultus from southern California and northern Baja California peninsula be considered as a species. Scapanus latimanus es una especie con muchas diferencias morfológicas entre sus poblaciones. Esta variación está asociada con múltiples cambios taxonómicos a nivel de especie o subespecie. Para proponer una mejor comprensión del complejo latimanus, en este estudio se in- corpora la información genética a los estudios previos de morfología. Se secuenciaron genes de origen mitocondrial (citocromo b; citocromo c oxidasa subunidad I y III) para construir la filogenia para la subfamilia Scalopinae en Norteamérica. -
Molecular Phylogenetics of Shrews (Mammalia: Soricidae) Reveal Timing of Transcontinental Colonizations
Molecular Phylogenetics and Evolution 44 (2007) 126–137 www.elsevier.com/locate/ympev Molecular phylogenetics of shrews (Mammalia: Soricidae) reveal timing of transcontinental colonizations Sylvain Dubey a,*, Nicolas Salamin a, Satoshi D. Ohdachi b, Patrick Barrie`re c, Peter Vogel a a Department of Ecology and Evolution, University of Lausanne, CH-1015 Lausanne, Switzerland b Institute of Low Temperature Science, Hokkaido University, Sapporo 060-0819, Japan c Laboratoire Ecobio UMR 6553, CNRS, Universite´ de Rennes 1, Station Biologique, F-35380, Paimpont, France Received 4 July 2006; revised 8 November 2006; accepted 7 December 2006 Available online 19 December 2006 Abstract We sequenced 2167 base pairs (bp) of mitochondrial DNA cytochrome b and 16S, and 1390 bp of nuclear genes BRCA1 and ApoB in shrews taxa (Eulipotyphla, family Soricidae). The aim was to study the relationships at higher taxonomic levels within this family, and in particular the position of difficult clades such as Anourosorex and Myosorex. The data confirmed two monophyletic subfamilies, Soric- inae and Crocidurinae. In the former, the tribes Anourosoricini, Blarinini, Nectogalini, Notiosoricini, and Soricini were supported. The latter was formed by the tribes Myosoricini and Crocidurini. The genus Suncus appeared to be paraphyletic and included Sylvisorex.We further suggest a biogeographical hypothesis, which shows that North America was colonized by three independent lineages of Soricinae during middle Miocene. Our hypothesis is congruent with the first fossil records for these taxa. Using molecular dating, the first exchang- es between Africa and Eurasia occurred during the middle Miocene. The last one took place in the Late Miocene, with the dispersion of the genus Crocidura through the old world. -
Author's Personal Copy
Author's personal copy Molecular Phylogenetics and Evolution 70 (2014) 513–521 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Multilocus phylogeny of talpine moles (Talpini, Talpidae, Eulipotyphla) and its implications for systematics ⇑ ⇑ Kai He a,b,1, Akio Shinohara c,1, Xue-Long Jiang a, , Kevin L. Campbell b, a State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China b Department of Biological Sciences, University of Manitoba, Winnipeg, Manitoba R3T 2N2, Canada c Department of Bio-Resources, Division of Biotechnology, Frontier Science Research Center, University of Miyazaki, Miyazaki 889-1692, Japan article info abstract Article history: The tribe Talpini is a group of strictly subterranean moles distributed across the Eurasian Continent Received 5 June 2013 whose phylogenetic relationships and taxonomy remain unresolved. Here we report a multi-locus Revised 13 September 2013 nuclear-mitochondrial DNA dataset (9468 bp) from 11 talpine species encompassing all five recognized Accepted 3 October 2013 genera, together with analyses of their divergence times and evolutionary affinities inferred from maxi- Available online 16 October 2013 mum likelihood and Bayesian approaches. Our results finely resolved all relationships except the root of the four recognized Asian genera, which was placed sister to the genus Talpa. With respect to the Asian Keywords: clade, we moreover provide the first molecular support for a sister-taxon relationship between Parascap- Cryptic species tor and Scaptochirus and confirm that the genus Euroscaptor is paraphyletic. Further, and despite a rela- Species tree Species delimitation tively small sample size (22 specimens), our species delimitation analyses support the existence of at Talpidae least two genetically distinct, and hence potentially cryptic species. -
New Records of Parascalops, Neurotrichus and Condylura (Talpinae, Insectívora) from the Pliocene of Poland
Acta Theriologica 38 (2): 125 - 137,1993. PL ISSN 0001 -7051 New records of Parascalops, Neurotrichus and Condylura (Talpinae, Insectívora) from the Pliocene of Poland Stanislaw SK0CZEÑ Skoczeń S. 1993. New records of Parascalops, Neurotrichus and Condylura (Talpinae, Insectívora) from the Pliocene of Poland. Acta theriol. 38: 125 - 137. Four humeri, two from the locality of Podlesice (early Pliocene, early Ruscinian MN 14) and two from Węże 1 A (Pliocene, Ruscinian MN 15) are the basis for description of a new species of Parascalops fossilis sp. n. In Węże 2 (Pliocene, Ruscinian-Villanyian MN 15/16) one M1 and one humerus oí Neurotrichus minor sp. n. was found. Many remains of Condylura kowalskii Skoczeń, 1976, come from the same locality as well. A single humerus of Neurotrichus polonicus Skoczeń, 1980, has been found in Kielniki 3 B (late Villanyian MN 17). All the above mentioned Talpidae species belong to the recent North American endemic genera and appeared as single species exclusively. The problem of probable migration or development of convergent lines is discussed. Department of Zoology and Wildlife Management, Agricultural Academy of Cracow, 29 November Allee 46, 31-425 Cracow, Poland Key words: Parascalops, Neurotrichus, Condylura, Talpinae, Pliocene, Poland Introduction The first data concerning Condylura remains from Polish Pliocene localities (Skoczeń 1976) and Neurotrichus (Skoczeń 1980) has led to vivid discussion of the origin and possible migrations of North American Talpidae from the Old World or development of parallel or convergent lines. The present data on fossil Talpinae, among them Parascalops also have bearing on further discussion. The Quyania chowi from the upper Miocene (Upper Turolian) or lower Pliocene (Ruscinian) of inner Mongolia, described by Storch and Qiu (1983), exhibits clear phyletic relations to the genus Neurotrichus of the Old and New World. -
Phylogenetic Position of the Gansu Mole Scapanulus Oweni Thomas, 1912 and the Relationships Between Strictly Fossorial Tribes of the Family Talpidae1 A
ISSN 00124966, Doklady Biological Sciences, 2015, Vol. 464, pp. 230–234. © Pleiades Publishing, Ltd., 2015. Published in Russian in Doklady Akademii Nauk, 2015, Vol. 464, No. 2, pp. 238–242. GENERAL BIOLOGY Phylogenetic Position of the Gansu Mole Scapanulus oweni Thomas, 1912 and the Relationships between Strictly Fossorial Tribes of the Family Talpidae1 A. A. Bannikovaa, E. D. Zemlemerovaa, V. S. Lebedeva, D. Yu. Aleksandrovb, Yun Fangc, and B. I. Sheftelb Presented by Academician Yu. Yu. Dgebuadze April 6, 2015 Received April 9, 2015 Abstract—The results of the first molecular study focused on the phylogenetic position of the Gansu mole, Scapanulus oweni are presented. The analysis based on sequences of the mitochondrial cytb gene and five nuclear genes supports the monophyly of the Scalopini tribe including S. oweni and shows that two highly fos sorial talpid tribes, Talpini and Scalopini, are not immediate sister taxa. These results highlight the role of morphological parallelism as a potential source of conflict between molecular and morphologybased phy logenies in Talpidae. DOI: 10.1134/S0012496615050038 While essential progress was achieved during the could help to resolve phylogenetic relationships of this last years in the talpid molecular phylogenetics, many species. studies focus mainly on the relationships of species Concerning morphology, the available evidence is and genera within tribes [1–4]. The order of diver controversial in many respects. Myological data as well gence and relationships at the tribal level remains an as the parsimony analysis of the skull characters of the unsolved problem in the phylogenetic history of Talp presentday genera of Talpidae [7] do not support the idae.