<I>Diadema Ahmadii</I>
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The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
Alternaria Alternata
Published on INSPQ (https://www.inspq.qc.ca) Home > Compendium sur les moisissures > Fiches sur les moisissures > Alternaria alternata Alternaria alternata Alternaria alternata [1] [2] [3] [4] [5] [6] Introduction Laboratoire Métabolites Problèmes de santé Milieux Diagnostic Bibliographie Introduction Alternaria est un genre comportant approximativement 50 espèces {813, 816, 3318}. A. alternata est l’espèce la plus fréquemment rencontrée et un des mycètes les plus communs de la flore fongique aéroportée {989, 813}. Alternaria spp. est connu mondialement à la fois comme organisme phytopathogène courant et comme allergène aéroporté; plus particulièrement, l’A. alternata est reconnu comme l’espèce aéroallergène type, et, dans une majorité de cas, les problèmes de santé chez les humains et les animaux ont été associés à cette espèce. Taxonomie Règne Fungi Famille Pleosporaceae Phylum Ascomycota Genre Alternaria Classe Euascomycetes (ou Dothideomycetes) Espèce alternata Ordre Pleosporales Le Comoclathris permunda est la forme sexuée ou télémorphe del’Alternaria alternata et le Lewia sp. est la forme parfaite de plusieurs autres Alternaria sp. {3842}; d’autres genres télémorphes comprennent le Graphyllium et le Pleospora. Le genre comporte 44 espèces bien étudiées et dont l’identification est établie, mais il se peut qu’il en existe des centaines de plus; de fait, la banque de données universelle de l’Universal Protein Resource (UniProt) rapporte 95 espèces nommées parmi les 433 souches enregistrées {3318}. Certains taxonomistes suggèrent également que l’A. alternata est une espèce représentative d’un complexe d’espèces plutôt qu’une espèce unique, et ce groupe pourrait comprendre plusieurs espèces hétérogènes {816}. Écologie Les espèces d’Alternaria sont des mycètes dématiacés cosmopolites fréquemment isolés d’échantillons de plantes, de terre, de nourriture et d’air intérieur. -
Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two
(topsheet) Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113. Fieldiana, Botany H. Thorsten Lumbsch Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7881 fax: 312-665-7158 e-mail: [email protected] Sabine M. Huhndorf Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7855 fax: 312-665-7158 e-mail: [email protected] 1 (cover page) FIELDIANA Botany NEW SERIES NO 00 Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 H. Thorsten Lumbsch Sabine M. Huhndorf [Date] Publication 0000 PUBLISHED BY THE FIELD MUSEUM OF NATURAL HISTORY 2 Table of Contents Abstract Part One. Outline of Ascomycota - 2009 Introduction Literature Cited Index to Ascomycota Subphylum Taphrinomycotina Class Neolectomycetes Class Pneumocystidomycetes Class Schizosaccharomycetes Class Taphrinomycetes Subphylum Saccharomycotina Class Saccharomycetes Subphylum Pezizomycotina Class Arthoniomycetes Class Dothideomycetes Subclass Dothideomycetidae Subclass Pleosporomycetidae Dothideomycetes incertae sedis: orders, families, genera Class Eurotiomycetes Subclass Chaetothyriomycetidae Subclass Eurotiomycetidae Subclass Mycocaliciomycetidae Class Geoglossomycetes Class Laboulbeniomycetes Class Lecanoromycetes Subclass Acarosporomycetidae Subclass Lecanoromycetidae Subclass Ostropomycetidae 3 Lecanoromycetes incertae sedis: orders, genera Class Leotiomycetes Leotiomycetes incertae sedis: families, genera Class Lichinomycetes Class Orbiliomycetes Class Pezizomycetes Class Sordariomycetes Subclass Hypocreomycetidae Subclass Sordariomycetidae Subclass Xylariomycetidae Sordariomycetes incertae sedis: orders, families, genera Pezizomycotina incertae sedis: orders, families Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 Introduction Literature Cited 4 Abstract Part One presents the current classification that includes all accepted genera and higher taxa above the generic level in the phylum Ascomycota. -
Distribution of <I>Alternaria</I> Species Among Sections. 2. Section <I>Alternaria</I>
ISSN (print) 0093-4666 © 2015. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/130.941 Volume 130, pp. 941–949 October–December 2015 Distribution of Alternaria species among sections. 2. Section Alternaria Philipp B. Gannibal Laboratory of Mycology and Phytopathology, All-Russian Institute of Plant Protection, Shosse Podbelskogo 3, Saint Petersburg, 196608, Russia Correspondence to: [email protected] Abstract — Among several groups of small-spored Alternaria species, A. sect. Alternaria (containing the generic type) has been found to be isolated, based on phylogenetic as well as morphological data. Molecular phylogenetic data confirm inclusion of twenty-one species in this section besides the type species. Examination of additional material, conforming to the morphological description for the section but not as yet phylogenetically characterized, allow confirmation of an additional 37 species. All 59 species are listed, and an emended description of Alternaria sect. Alternaria is presented. Key words — Alternaria alternata, A. herbiphorbicola, A. gomphrenae, Pseudoalternaria Introduction The genus Alternaria Nees is a large taxonomic group that comprises approximately 280 species (Simmons 2007). A series of large-scale works has attempted to resolve the phylogeny of Alternaria and other alternarioid hyphomycetes by employing more than ten different genomic loci (Pryor & Bigelow 2003; Hong et al. 2005; Runa et al. 2009; Lawrence et al. 2012, 2013, 2014; Woudenberg et al. 2013). Several well-supported phylogenetic lineages have been revealed within the alternarioid hyphomycetes, resulting in several taxonomic novelties. The genus Alternaria was divided into eight taxonomic sections by Lawrence et al. (2013). Presenting an alternative concept, Woudenberg et al. -
Dothideomycetes and Leotiomycetes Sterile Mycelia
Gnavi et al. SpringerPlus 2014, 3:508 http://www.springerplus.com/content/3/1/508 a SpringerOpen Journal RESEARCH Open Access Dothideomycetes and Leotiomycetes sterile mycelia isolated from the Italian seagrass Posidonia oceanica based on rDNA data Giorgio Gnavi1, Enrico Ercole2, Luigi Panno1, Alfredo Vizzini2 and Giovanna C Varese1* Abstract Marine fungi represent a group of organisms extremely important from an ecological and biotechnological point of view, but often still neglected. In this work, an in-depth analysis on the systematic and the phylogenetic position of 21 sterile mycelia, isolated from Posidonia oceanica, was performed. The molecular (ITS and LSU sequences) analysis showed that several of them are putative new species belonging to three orders in the Ascomycota phylum: Pleosporales, Capnodiales and Helotiales. Phylogenetic analyses were performed using Bayesian Inference and Maximum Likelihood approaches. Seven sterile mycelia belong to the genera firstly reported from marine environments. The bioinformatic analysis allowed to identify five sterile mycelia at species level and nine at genus level. Some of the analyzed sterile mycelia could belong to new lineages of marine fungi. Keywords: Dothideomycetes; Fungal molecular phylogeny; Leotiomycetes; Marine fungi; Posidonia oceanica; Sterile mycelia Background metabolites that often display promising biological and The oceans host a vast biodiversity. Most of the marine pharmacological properties (Rateb and Ebel 2011) and the microbial biodiversity has not yet been discovered and remarkably high hit rates of marine compounds in screen- characterized, both taxonomically and biochemically. ing for drug leads makes the search in marine organisms Marine fungal strains have been obtained from virtually quite attractive. every possible marine habitat, including inorganic matter, In our previous work (Panno et al. -
FCE 37 Ebook
Folia Cryptog. Estonica, Fasc. 37: 1–20 (2000) Lichenized, lichenicolous and other fungi from North and North- East Greenland Vagn Alstrup1, Eric Steen Hansen1 & Fred J. A. Daniels2 1Botanical Museum, University of Copenhagen, 130 Gothersgade, DK-1123 Copenhagen K, Denmark 2Institute of Plant Ecology, Westfälische Wilhems-Universität, 55 Hindenburgplatz, D-48143 Münster, Germany Abstract: A total of 410 taxa of lichens, lichenicolous fungi and other fungi are reported from fourteen localities in Kronprins Christian Land in North Greenland and Lambert Land in North East Greenland. Four new combinations are made, viz. Aspicilia bennettii, A. expansa, Caloplaca elaeophora and Neuropogon sphacelatus. 60 species of lichens and other fungi are reported as new to Greenland, viz. Acarospora impressula, A. picea, Amphisphaerella erikssonii, Buellia elegans, Carbonea aggregantula, C. atronivea, Catillaria contristans, C. subnegans, Collema coccophorum, Dacampia engeliana, Dactylospora rimulicola, Dermatocarpon luridum, D. meiophyllizum, Didymella praestabilis, Gibbera uliginosa, Ionaspis ventosa, Lecanora cavicola, L. flotowiana, L. perpruinosa, L. umbrina, Lecidella carpathica, Leptogium corniculatum, Leptosphaeria hendersoniae, Leptosphaerulina peltigerae, Lichenostigma semiimmersa, Melanomma sanguinarium, Merismatium heterophractum, M. nigritellum, Peltigera britannica, Pertusaria chiodectonoides, Phomopsis salicina, Physarum oblatum, Placynthium subradiatum, Pleospora graminearum, P. pyrenaica, Polyblastia fuscoargillacea, P. peminosa, P. schisticola, -
A Molecular and Morphological Reassessment of Diademaceae
Hindawi Publishing Corporation e Scientific World Journal Volume 2014, Article ID 675348, 11 pages http://dx.doi.org/10.1155/2014/675348 Research Article A Molecular and Morphological Reassessment of Diademaceae Hiran A. Ariyawansa,1,2,3 Rungtiwa Phookamsak,2,3 Saowaluck Tibpromma,2,3 Ji-Chuan Kang,1 and Kevin D. Hyde2,3 1 The Engineering and Research Center for Southwest Bio-Pharmaceutical Resources of National Education Ministry of China, Guizhou University, Guiyang, Guizhou 550025, China 2 School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand 3 Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand Correspondence should be addressed to Ji-Chuan Kang; [email protected] and Kevin D. Hyde; [email protected] Received 6 August 2013; Accepted 8 October 2013; Published 12 January 2014 Academic Editors: R. Jeewon and S. J. Suh Copyright © 2014 Hiran A. Ariyawansa et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. We revisit the family Diademaceae based on available sequence data and morphology. Diademaceae is characterized by ascomata opening with a flat circular lid and fissitunicate, short orbicular frequently cylindrical, pedicellate asci. Ascospores are frequently circular in section but narrowing to one end with three or more transverse septa, without longitudinal septa, and mostly with a thick sheath. In recent treatments Clathrospora, Comoclathris, Diadema, Diademosa,andGraphyllium were placed in the family. Following molecular and morphological study, Clathrospora, Comoclathris,andDiademosa, are excluded from the family and referred to Pleosporaceae. -
Proposed Generic Names for Dothideomycetes
Naming and outline of Dothideomycetes–2014 Nalin N. Wijayawardene1, 2, Pedro W. Crous3, Paul M. Kirk4, David L. Hawksworth4, 5, 6, Dongqin Dai1, 2, Eric Boehm7, Saranyaphat Boonmee1, 2, Uwe Braun8, Putarak Chomnunti1, 2, , Melvina J. D'souza1, 2, Paul Diederich9, Asha Dissanayake1, 2, 10, Mingkhuan Doilom1, 2, Francesco Doveri11, Singang Hongsanan1, 2, E.B. Gareth Jones12, 13, Johannes Z. Groenewald3, Ruvishika Jayawardena1, 2, 10, James D. Lawrey14, Yan Mei Li15, 16, Yong Xiang Liu17, Robert Lücking18, Hugo Madrid3, Dimuthu S. Manamgoda1, 2, Jutamart Monkai1, 2, Lucia Muggia19, 20, Matthew P. Nelsen18, 21, Ka-Lai Pang22, Rungtiwa Phookamsak1, 2, Indunil Senanayake1, 2, Carol A. Shearer23, Satinee Suetrong24, Kazuaki Tanaka25, Kasun M. Thambugala1, 2, 17, Saowanee Wikee1, 2, Hai-Xia Wu15, 16, Ying Zhang26, Begoña Aguirre-Hudson5, Siti A. Alias27, André Aptroot28, Ali H. Bahkali29, Jose L. Bezerra30, Jayarama D. Bhat1, 2, 31, Ekachai Chukeatirote1, 2, Cécile Gueidan5, Kazuyuki Hirayama25, G. Sybren De Hoog3, Ji Chuan Kang32, Kerry Knudsen33, Wen Jing Li1, 2, Xinghong Li10, ZouYi Liu17, Ausana Mapook1, 2, Eric H.C. McKenzie34, Andrew N. Miller35, Peter E. Mortimer36, 37, Dhanushka Nadeeshan1, 2, Alan J.L. Phillips38, Huzefa A. Raja39, Christian Scheuer19, Felix Schumm40, Joanne E. Taylor41, Qing Tian1, 2, Saowaluck Tibpromma1, 2, Yong Wang42, Jianchu Xu3, 4, Jiye Yan10, Supalak Yacharoen1, 2, Min Zhang15, 16, Joyce Woudenberg3 and K. D. Hyde1, 2, 37, 38 1Institute of Excellence in Fungal Research and 2School of Science, Mae Fah Luang University, -
A Molecular Phylogenetic Reappraisal of the Hysteriaceae, Mytilinidiaceae and Gloniaceae (Pleosporomycetidae, Dothideomycetes) with Keys to World Species
available online at www.studiesinmycology.org StudieS in Mycology 64: 49–83. 2009. doi:10.3114/sim.2009.64.03 A molecular phylogenetic reappraisal of the Hysteriaceae, Mytilinidiaceae and Gloniaceae (Pleosporomycetidae, Dothideomycetes) with keys to world species E.W.A. Boehm1*, G.K. Mugambi2, A.N. Miller3, S.M. Huhndorf4, S. Marincowitz5, J.W. Spatafora6 and C.L. Schoch7 1Department of Biological Sciences, Kean University, 1000 Morris Ave., Union, New Jersey 07083, U.S.A.; 2National Museum of Kenya, Botany Department, P.O. Box 40658, 00100, Nairobi, Kenya; 3Illinois Natural History Survey, University of Illinois Urbana-Champaign, 1816 South Oak Street, Champaign, IL 6182, U.S.A.; 4The Field Museum, 1400 S. Lake Shore Dr, Chicago, IL 60605, U.S.A.; 5Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0002, South Africa; 6Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 93133, U.S.A.; 7National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health, GenBank, 45 Center Drive, MSC 6510, Building 45, Room 6an.18, Bethesda, MD, 20892, U.S.A. *Correspondence: E.W.A. Boehm, [email protected] Abstract: A reappraisal of the phylogenetic integrity of bitunicate ascomycete fungi belonging to or previously affiliated with the Hysteriaceae, Mytilinidiaceae, Gloniaceae and Patellariaceae is presented, based on an analysis of 121 isolates and four nuclear genes, the ribosomal large and small subunits, transcription elongation factor 1 and -
Genera of Phytopathogaenic Fungi: GOPHY 3
Accepted Manuscript Genera of phytopathogaenic fungi: GOPHY 3 Y. Marin-Felix, M. Hernández-Restrepo, I. Iturrieta-González, D. García, J. Gené, J.Z. Groenewald, L. Cai, Q. Chen, W. Quaedvlieg, R.K. Schumacher, P.W.J. Taylor, C. Ambers, G. Bonthond, J. Edwards, S.A. Krueger-Hadfield, J.J. Luangsa-ard, L. Morton, A. Moslemi, M. Sandoval-Denis, Y.P. Tan, R. Thangavel, N. Vaghefi, R. Cheewangkoon, P.W. Crous PII: S0166-0616(19)30008-9 DOI: https://doi.org/10.1016/j.simyco.2019.05.001 Reference: SIMYCO 89 To appear in: Studies in Mycology Please cite this article as: Marin-Felix Y, Hernández-Restrepo M, Iturrieta-González I, García D, Gené J, Groenewald JZ, Cai L, Chen Q, Quaedvlieg W, Schumacher RK, Taylor PWJ, Ambers C, Bonthond G, Edwards J, Krueger-Hadfield SA, Luangsa-ard JJ, Morton L, Moslemi A, Sandoval-Denis M, Tan YP, Thangavel R, Vaghefi N, Cheewangkoon R, Crous PW, Genera of phytopathogaenic fungi: GOPHY 3, Studies in Mycology, https://doi.org/10.1016/j.simyco.2019.05.001. This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. ACCEPTED MANUSCRIPT Genera of phytopathogaenic fungi: GOPHY 3 Y. Marin-Felix 1,2* , M. -
A New Genus and Three New Species of Hysteriaceous Ascomycetes from the Semiarid Region of Brazil
Phytotaxa 176 (1): 298–308 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Article PHYTOTAXA Copyright © 2014 Magnolia Press ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.176.1.28 A new genus and three new species of hysteriaceous ascomycetes from the semiarid region of Brazil DAVI AUGUSTO CARNEIRO DE ALMEIDA1, LUÍS FERNANDO PASCHOLATI GUSMÃO1 & ANDREW NICHOLAS MILLER2 1 Universidade Estadual de Feira de Santana, Av. Transnordestina, S/N – Novo Horizonte, 44036-900. Feira de Santana, BA, Brazil. 2 Illinois Natural History Survey, University of Illinois, 1816 S. Oak St., Champaign, IL 61820 * email: [email protected] Abstract During an inventory of ascomycetes in the semi-arid region of Brazil, one new genus and three new species of hysteriaceous ascomycetes were found. Maximum likelihood and Bayesian phylogenetic analyses of the nuclear ribosomal 28S large subunit were performed to investigate the placement of the new taxa within the class Dothideomycetes. Anteaglonium brasiliense is described as a new species within the order Pleosporales, and Graphyllium caracolinense is described as a new species nested inside Hysteriales. Morphological and molecular data support Hysterodifractum as a new monotypic genus in the Hysteriaceae. The type species, H. partisporum, is characterized by navicular, carbonaceous, gregarious hysterothecia and pigmented, fusiform ascospores that disarticulate into 16 ovoid or obovoid, septate, part-spores. This is the first report of a hysteriaceous fungus producing part-spores. Key words: Dothideomycetes, LSU, phylogeny, Pleosporomycetidae, taxonomy, tropical microfungi Introduction Hysteriaceous ascoloculares ascomycetes produce navicular, carbonaceous, persistent ascomata that are superficial or erumpent and dehisce through a longitudinal slit (Boehm et al. -
Additions to the Genus Rhytidhysteron in Hysteriaceae Author(S): Kasun M
Additions to the Genus Rhytidhysteron in Hysteriaceae Author(s): Kasun M. Thambugala , Kevin D. Hyde , Prapassorn D. Eungwanichayapant , Andrea I. Romero & Zuo-Yi Liu Source: Cryptogamie, Mycologie, 37(1):99-116. Published By: Association des Amis des Cryptogames https://doi.org/10.7872/crym/v37.iss1.2016.99 URL: http://www.bioone.org/doi/full/10.7872/crym/v37.iss1.2016.99 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non- commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Cryptogamie, Mycologie, 2016, 37 (1): 99-116 © 2016 Adac. Tous droits réservés $GGLWLRQVWRWKHJHQXVRhytidhysteronLQ+\VWHULDFHDH Kasun M. THAMBUGALA a,b,c, Kevin D. HYDEb,c,d, Prapassorn D. EUNGWANICHAYAPANT c, Andrea I. ROMERO e & Zuo-Yi LIU a* aGuizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Guiyang, Guizhou 550006, People’s Republic of China bCenter of Excellence in Fungal Research, Chiang Rai 57100, Thailand cSchool of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand dKey Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China ePrhideb-Conicet, Deptomento Cs.