Stem Cells: a Journey Into a New Frontier
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The Act of Controlling Adult Stem Cell Dynamics: Insights from Animal Models
biomolecules Review The Act of Controlling Adult Stem Cell Dynamics: Insights from Animal Models Meera Krishnan 1, Sahil Kumar 1, Luis Johnson Kangale 2,3 , Eric Ghigo 3,4 and Prasad Abnave 1,* 1 Regional Centre for Biotechnology, NCR Biotech Science Cluster, 3rd Milestone, Gurgaon-Faridabad Ex-pressway, Faridabad 121001, India; [email protected] (M.K.); [email protected] (S.K.) 2 IRD, AP-HM, SSA, VITROME, Aix-Marseille University, 13385 Marseille, France; [email protected] 3 Institut Hospitalo Universitaire Méditerranée Infection, 13385 Marseille, France; [email protected] 4 TechnoJouvence, 13385 Marseille, France * Correspondence: [email protected] Abstract: Adult stem cells (ASCs) are the undifferentiated cells that possess self-renewal and differ- entiation abilities. They are present in all major organ systems of the body and are uniquely reserved there during development for tissue maintenance during homeostasis, injury, and infection. They do so by promptly modulating the dynamics of proliferation, differentiation, survival, and migration. Any imbalance in these processes may result in regeneration failure or developing cancer. Hence, the dynamics of these various behaviors of ASCs need to always be precisely controlled. Several genetic and epigenetic factors have been demonstrated to be involved in tightly regulating the proliferation, differentiation, and self-renewal of ASCs. Understanding these mechanisms is of great importance, given the role of stem cells in regenerative medicine. Investigations on various animal models have played a significant part in enriching our knowledge and giving In Vivo in-sight into such ASCs regulatory mechanisms. In this review, we have discussed the recent In Vivo studies demonstrating the role of various genetic factors in regulating dynamics of different ASCs viz. -
Epigenetic Metabolites License Stem Cell States
CHAPTER SIX Epigenetic metabolites license stem cell states Logeshwaran Somasundarama,b,†, Shiri Levya,b,†, Abdiasis M. Husseina,b, Devon D. Ehnesa,b, Julie Mathieub,c, Hannele Ruohola-Bakera,b,∗ aDepartment of Biochemistry, University of Washington, Seattle, WA, United States bInstitute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA, United States cDepartment of Comparative Medicine, University of Washington, Seattle, WA, United States ∗ Corresponding author: e-mail address: [email protected] Contents 1. Introduction 210 2. Stem cell energetics 210 3. Metabolism of quiescent stem cells 212 3.1 Adult stem cells 212 3.2 Pluripotent stem cell quiescence, diapause 216 4. Metabolism of active stem cells 217 4.1 Metabolism after fertilization 217 4.2 Metabolism of pre-implantation and post-implantation pluripotent stem cells 218 4.3 Metabolism of actively cycling adult stem cells: MSC as case-study 220 5. HIF, the master regulator of metabolism 222 6. Epigenetic signatures and epigenetic metabolites 224 6.1 Epigenetic signatures of naïve and primed pluripotent stem cells 224 6.2 Epigenetic signatures of adult stem cells 227 6.3 Epigenetic metabolites 228 7. Conclusion 229 Acknowledgments 230 References 230 Further reading 240 Abstract It has become clear during recent years that stem cells undergo metabolic remodeling during their activation process. While these metabolic switches take place in pluripotency as well as adult stem cell populations, the rules that govern the switch are not clear. † Equal contribution. # Current Topics in Developmental Biology, Volume 138 2020 Elsevier Inc. 209 ISSN 0070-2153 All rights reserved. https://doi.org/10.1016/bs.ctdb.2020.02.003 210 Logeshwaran Somasundaram et al. -
Translational Applications of Adult Stem Cell-Derived Organoids Jarno Drost1,2,* and Hans Clevers1,2,3,‡
© 2017. Published by The Company of Biologists Ltd | Development (2017) 144, 968-975 doi:10.1242/dev.140566 PRIMER Translational applications of adult stem cell-derived organoids Jarno Drost1,2,* and Hans Clevers1,2,3,‡ ABSTRACT of organotypic organoids from single Lgr5-positive ISCs (Sato Adult stem cells from a variety of organs can be expanded long- et al., 2009). These organoids contained all cell types of the ‘ ’ term in vitro as three-dimensional organotypic structures termed intestinal epithelium and were structured into proliferative crypt ‘ ’ organoids. These adult stem cell-derived organoids retain their organ and differentiated villus compartments, thereby retaining the identity and remain genetically stable over long periods of time. The architecture of the native intestine (Sato et al., 2009). In addition ability to grow organoids from patient-derived healthy and diseased to Wnt/R-spondin, epidermal growth factor (EGF) (Dignass and tissue allows for the study of organ development, tissue homeostasis Sturm, 2001), noggin (BMP inhibitor) (Haramis et al., 2004) and an and disease. In this Review, we discuss the generation of adult artificial laminin-rich extracellular matrix (provided by Matrigel) stem cell-derived organoid cultures and their applications in in vitro complemented the cocktail for successful in vitro propagation of disease modeling, personalized cancer therapy and regenerative mouse ISC-derived organoids (Sato et al., 2009). At the same time, medicine. Ootani et al. reported another Wnt-driven in vitro culture of ISCs (Ootani et al., 2009). In contrast to Sato et al., this culture was not KEY WORDS: Adult stem cells, Organoids, Disease modelling, based on defined growth factors. -
Cancer from the Perspective of Stem Cells and Misappropriated Tissue Regeneration Mechanisms
Leukemia (2018) 32:2519–2526 https://doi.org/10.1038/s41375-018-0294-7 REVIEW ARTICLE Corrected: Correction Stem cell biology Cancer from the perspective of stem cells and misappropriated tissue regeneration mechanisms 1,2 1 1 1,2 1 Mariusz Z. Ratajczak ● Kamila Bujko ● Aaron Mack ● Magda Kucia ● Janina Ratajczak Received: 8 September 2018 / Accepted: 17 September 2018 / Published online: 30 October 2018 © The Author(s) 2018. This article is published with open access Abstract Tumorigenesis can be considered as pathologically misappropriated tissue regeneration. In this review we will address some unresolved issues that support this concept. First, we will address the issue of the identity of cancer-initiating cells and the presence of cancer stem cells in growing tumors. We will also ask are there rare and distinct populations of cancer stem cells in established tumor cell lines, or are all of the cells cancer stem cells? Second, the most important clinical problem with cancer is its metastasis, and here a challenging question arises: by employing radio-chemotherapy for tumor treatment, do we unintentionally create a prometastatic microenvironment in collateral organs? Specifically, many factors upregulated in response to radio-chemotherapy-induced injury may attract highly migratory cancer cells that survived initial treatment. 1234567890();,: 1234567890();,: Third, what is the contribution of normal circulating stem cells to the growing malignancy? Do circulating normal stem cells recognize a tumor as a hypoxia-damaged tissue that needs -
Adult Spinal Cord Stem Cells Generate Neurons After Transplantation in the Adult Dentate Gyrus
The Journal of Neuroscience, December 1, 2000, 20(23):8727–8735 Adult Spinal Cord Stem Cells Generate Neurons after Transplantation in the Adult Dentate Gyrus Lamya S. Shihabuddin, Philip J. Horner, Jasodhara Ray, and Fred H. Gage The Salk Institute, Laboratory of Genetics, La Jolla, California 92037 The adult rat spinal cord contains cells that can proliferate and population of cells into the adult rat spinal cord resulted in their differentiate into astrocytes and oligodendroglia in situ. Using differentiation into glial cells only. However, after heterotopic clonal and subclonal analyses we demonstrate that, in contrast transplantation into the hippocampus, transplanted cells that to progenitors isolated from the adult mouse spinal cord with a integrated in the granular cell layer differentiated into cells char- combination of growth factors, progenitors isolated from the acteristic of this region, whereas engraftment into other hip- adult rat spinal cord using basic fibroblast growth factor alone pocampal regions resulted in the differentiation of cells with display stem cell properties as defined by their multipotentiality astroglial and oligodendroglial phenotypes. The data indicate and self-renewal. Clonal cultures derived from single founder that clonally expanded, multipotent adult progenitor cells from a cells generate neurons, astrocytes, and oligodendrocytes, con- non-neurogenic region are not lineage-restricted to their devel- firming the multipotent nature of the parent cell. Subcloning opmental origin but can generate region-specific neurons in vivo analysis showed that after serial passaging, recloning, and ex- when exposed to the appropriate environmental cues. pansion, these cells retained multipotentiality, indicating that they Key words: spinal cord; stem cells; FGF; transplantation; neu- are self-renewing. -
Stem Cell Therapy and Gene Transfer for Regeneration
Gene Therapy (2000) 7, 451–457 2000 Macmillan Publishers Ltd All rights reserved 0969-7128/00 $15.00 www.nature.com/gt MILLENNIUM REVIEW Stem cell therapy and gene transfer for regeneration T Asahara, C Kalka and JM Isner Cardiovascular Research and Medicine, St Elizabeth’s Medical Center, Tufts University School of Medicine, Boston, MA, USA The committed stem and progenitor cells have been recently In this review, we discuss the promising gene therapy appli- isolated from various adult tissues, including hematopoietic cation of adult stem and progenitor cells in terms of mod- stem cell, neural stem cell, mesenchymal stem cell and ifying stem cell potency, altering organ property, accelerating endothelial progenitor cell. These adult stem cells have sev- regeneration and forming expressional organization. Gene eral advantages as compared with embryonic stem cells as Therapy (2000) 7, 451–457. their practical therapeutic application for tissue regeneration. Keywords: stem cell; gene therapy; regeneration; progenitor cell; differentiation Introduction poietic stem cells to blood cells. The determined stem cells differentiate into ‘committed progenitor cells’, which The availability of embryonic stem (ES) cell lines in mam- retain a limited capacity to replicate and phenotypic fate. malian species has greatly advanced the field of biologi- In the past decade, researchers have defined such com- cal research by enhancing our ability to manipulate the mitted stem or progenitor cells from various tissues, genome and by providing model systems to examine including bone marrow, peripheral blood, brain, liver cellular differentiation. ES cells, which are derived from and reproductive organs, in both adult animals and the inner mass of blastocysts or primordial germ cells, humans (Figure 1). -
Progenitor Cell Therapy for the Treatment of Damaged Myocardium
Progenitor Cell Therapy for the Treatment of Damaged Protocol Myocardium due to Ischemia (20218) Medical Benefit Effective Date: 01/01/11 Next Review Date: 07/22 Preauthorization No Review Dates: 09/10, 07/11, 07/12, 07/13, 07/14, 07/15, 07/16, 07/17, 07/18, 07/19, 07/20, 07/21 This protocol considers this test or procedure investigational. If the physician feels this service is medically necessary, preauthorization is recommended. The following protocol contains medical necessity criteria that apply for this service. The criteria are also applicable to services provided in the local Medicare Advantage operating area for those members, unless separate Medicare Advantage criteria are indicated. If the criteria are not met, reimbursement will be denied and the patient cannot be billed. Please note that payment for covered services is subject to eligibility and the limitations noted in the patient’s contract at the time the services are rendered. RELATED PROTOCOLS Orthopedic Applications of Stem Cell Therapy (Including Allograft and Bone Substitute Products Used With Autologous Bone Marrow) Stem Cell Therapy for Peripheral Arterial Disease Populations Interventions Comparators Outcomes Individuals: Interventions of interest Comparators of interest Relevant outcomes include: • With acute cardiac are: are: • Disease-specific survival ischemia • Progenitor cell therapy • Standard therapy • Morbid events • Functional outcomes • Quality of life • Hospitalizations Individuals: Interventions of interest Comparators of interest Relevant outcomes -
Differential Contributions of Haematopoietic Stem Cells to Foetal and Adult Haematopoiesis: Insights from Functional Analysis of Transcriptional Regulators
Oncogene (2007) 26, 6750–6765 & 2007 Nature Publishing Group All rights reserved 0950-9232/07 $30.00 www.nature.com/onc REVIEW Differential contributions of haematopoietic stem cells to foetal and adult haematopoiesis: insights from functional analysis of transcriptional regulators C Pina and T Enver MRC Molecular Haematology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK An increasing number of molecules have been identified ment and appropriate differentiation down the various as candidate regulators of stem cell fates through their lineages. involvement in leukaemia or via post-genomic gene dis- In the adult organism, HSC give rise to differentiated covery approaches.A full understanding of the function progeny following a series of relatively well-defined steps of these molecules requires (1) detailed knowledge of during the course of which cells lose proliferative the gene networks in which they participate and (2) an potential and multilineage differentiation capacity and appreciation of how these networks vary as cells progress progressively acquire characteristics of terminally differ- through the haematopoietic cell hierarchy.An additional entiated mature cells (reviewed in Kondo et al., 2003). layer of complexity is added by the occurrence of different As depicted in Figure 1, the more primitive cells in the haematopoietic cell hierarchies at different stages of haematopoietic differentiation hierarchy are long-term ontogeny.Beyond these issues of cell context dependence, repopulating HSC (LT-HSC), -
Radial Glia Give Rise to Adult Neural Stem Cells in the Subventricular Zone
Radial glia give rise to adult neural stem cells in the subventricular zone Florian T. Merkle*†, Anthony D. Tramontin*†, Jose´ Manuel Garcı´a-Verdugo‡, and Arturo Alvarez-Buylla*§ *Department of Neurological Surgery, Developmental and Stem Cell Biology Program, Box 0525, University of California, San Francisco, CA 94143; and ‡Instituto Cavanilles, Universidad de Valencia, 46100 Valencia, Spain Communicated by Fernando Nottebohm, The Rockefeller University, Millbrook, NY, October 22, 2004 (received for review September 1, 2004) Neural stem cells with the characteristics of astrocytes persist in the ventricle of postnatal day (P) 0 mice (29). We show that these subventricular zone (SVZ) of the juvenile and adult brain. These radial glial cells give rise to neurons, astrocytes, ependymal cells, cells generate large numbers of new neurons that migrate through and oligodendrocytes. More importantly, we show that these the rostral migratory stream to the olfactory bulb. The develop- neonatal radial glial cells give rise to the SVZ astrocytes that mental origin of adult neural stem cells is not known. Here, we maintain neurogenesis in the adult mammalian brain. This work describe a lox–Cre-based technique to specifically and permanently identifies the neonatal origin of adult SVZ neural stem cells. label a restricted population of striatal radial glia in newborn mice. Within the first few days after labeling, these radial glial cells gave Materials and Methods rise to neurons, oligodendrocytes, and astrocytes, including astro- Labeling of P0 Radial Glia by Striatal Adenovirus (Ad) Injection. All cytes in the SVZ. Remarkably, the rostral migratory stream con- protocols followed the guidelines of the Laboratory Animal tained labeled migratory neuroblasts at all ages examined, includ- Resource Center at the University of California, San Francisco. -
Organoid Research Techniques
2ïäÞëìæá5âðâÞïàå7âàåëæîòâð Cover Image: STEMCELL Technologies Copyright © 2019 Wiley Periodicals, Inc. All rights reserved. No part of this publication may be reproduced, stored or transmitted in any form or by any means without the prior permission in writing from the copyright holder. 2ïäÞëìæá5âðâÞïàå7âàåëæîòâð CONTENTS 3 INTRODUCTION 6 HISTORIC MILESTONES 12 IN PRACTICE 25 PROBLEMS & SOLUTIONS 27 WHAT’S NEXT 29 REFERENCES 31 FURTHER READING 2ïäÞëìæá5âðâÞïàå7âàåëæîòâð INTRODUCTION Ì, KHDUG DERXW RUJDQRLGV DQG WKRXJKW WKH\ PLJKW EH WKH SHUIHFW PRGHO WR VWXG\ DOO WKH SURFHVVHV WKDW ,ÊP LQWHUHVWHG LQÍ VD\V 7DPDUD =LHWHN 3ULQFLSDO ,QYHVWLJDWRU LQ WKH 1XWULWLRQ3K\VLRORJ\/DERUDWRU\DWWKH7HFKQLFDO8QLYHUVLW\ RI 0XQLFK %HIRUH XVLQJ RUJDQRLGV =LHWHNÊV JURXS ZRUNHG Eoth witK DQ LQ YLYRÈPLFHÈDQG LQ YLWURÈFHOO OLQHVÈ V\VWHP WR DQVZHU WKHLU UHVHDUFK TXHVWLRQV EXW WKH\ ZHUH RQ WKH KXQW IRU D V\VWHP WKDW FRPELQHG WKH DGYDQWDJHV RI ERWK 8VLQJ SULPDU\ FHOO FXOWXUHV ZDV DQ LPSURYHPHQW EXWEHFDXVHWKHFHOOVFRXOGQÊWEHSDVVDJHGLWZDVQRWDORQJ WHUP V\VWHP 6R =LHWHN XVHG RUJDQRLG PRGHO V\VWHPV WR EHWWHU XQGHUVWDQG LQWHVWLQDO QXWULHQW WUDQVSRUW DQG VHQVLQJ. In recent years, our cumulative understanding of organ physiology, development, and maintenance has resulted in the creation of three- GLPHQVLRQDO ' RUJDQRLGVÈFXOWXUHG'FHOOVWUXFWXUHVWKDWPRGHO features of organ function, composition, and development. Given that the RUJDQVRIRXUERG\RFFXS\'VSDFHRUJDQRLGVEHWWHUUHSUHVHQWWKHSK\VL- ological system than their two-dimensional culture counterparts for the purpose of organ -
Stem Cells in Dermatology*
Revista2Vol89ingles2_Layout 1 4/2/14 10:04 AM Página 286 286 REVIEW s Stem cells in dermatology* Karolyn Sassi Ogliari1 Daniel Marinowic1 Dario Eduardo Brum1 Fabrizio Loth1 DOI: http://dx.doi.org/10.1590/abd1806-4841.20142530 Abstract: Preclinical and clinical research have shown that stem cell therapy could be a promising therapeutic option for many diseases in which current medical treatments do not achieve satisfying results or cure. This arti- cle describes stem cells sources and their therapeutic applications in dermatology today. Keywords: Adult stem cells; Dermatology; Hematopoietic stem cells; Stem cells; Regenerative medicine INTRODUCTION The current trend in medicine is to focus on two progenitor cell could generate cells that differed from major areas in which until recently there was not the original tissue (plasticity) and that they were much emphasis on: “prevention” of diseases and attracted to damaged tissues distant from their sur- “regenerative medicine”. The first provides the power roundings.2,3,4,5 Cells that presented this behavior were to change an individual’s destiny, preventing a dis- named stem cells. ease from occurring and increasing life expectancy, For a cell to be considered a stem cell, it has to while the second is an attempt to cure diseases for present three characteristics: self-renewal, i.e., asym- which modern medicine has yet no treatment avail- metric division resulting both in cells that are similar able. This article aims to briefly address regenerative to it, as well as specialized cells; the ability to regener- medicine, with the theme “stem cells”, from its dis- ate the tissue in which it is located, and plasticity, that covery to its current applications and future is the ability to generate other cell types, different prospects, describing the important role of skin cells from those of the original tissue.6 in this context. -
Mathematical Model of Adult Stem Cell Regeneration with Cross-Talk Between Genetic and Epigenetic Regulation
Mathematical model of adult stem cell regeneration with cross-talk between genetic and epigenetic regulation Jinzhi Leia, Simon A. Levinb,1, and Qing Niec aZhou Pei-Yuan Center for Applied Mathematics, Ministry of Education Key Laboratory of Bioinformatics, Tsinghua University, Beijing 100084, China; bDepartment of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544; and cDepartment of Mathematics, University of California, Irvine, CA 92697 Contributed by Simon A. Levin, January 7, 2014 (sent for review September 4, 2013) Adult stem cells, which exist throughout the body, multiply by cell are continuously cycling (9, 10). Each state is likely associated with division to replenish dying cells or to promote regeneration to repair a unique microenvironment (10, 11). Dormant and homeostatic damaged tissues. To perform these functions during the lifetime of HSCs are anchored in endosteal niches through interactions with organs or tissues, stem cells need to maintain their populations in a number of adhesion molecules expressed by both HSCs and a faithful distribution of their epigenetic states, which are suscepti- niche stromal cells (10, 12). Furthermore, injury-activated HSCs ble to stochastic fluctuations during each cell division, unexpected are located near sinusoidal vessels (the perivascular niche). In injury, and potential genetic mutations that occur during many cell response to the loss of hematopoietic cells, surviving dormant divisions. However, it remains unclear how the three processes of HSCs located