Echinoidea: Clypeasteroida)
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Preliminary Mass-Balance Food Web Model of the Eastern Chukchi Sea
NOAA Technical Memorandum NMFS-AFSC-262 Preliminary Mass-balance Food Web Model of the Eastern Chukchi Sea by G. A. Whitehouse U.S. DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration National Marine Fisheries Service Alaska Fisheries Science Center December 2013 NOAA Technical Memorandum NMFS The National Marine Fisheries Service's Alaska Fisheries Science Center uses the NOAA Technical Memorandum series to issue informal scientific and technical publications when complete formal review and editorial processing are not appropriate or feasible. Documents within this series reflect sound professional work and may be referenced in the formal scientific and technical literature. The NMFS-AFSC Technical Memorandum series of the Alaska Fisheries Science Center continues the NMFS-F/NWC series established in 1970 by the Northwest Fisheries Center. The NMFS-NWFSC series is currently used by the Northwest Fisheries Science Center. This document should be cited as follows: Whitehouse, G. A. 2013. A preliminary mass-balance food web model of the eastern Chukchi Sea. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-262, 162 p. Reference in this document to trade names does not imply endorsement by the National Marine Fisheries Service, NOAA. NOAA Technical Memorandum NMFS-AFSC-262 Preliminary Mass-balance Food Web Model of the Eastern Chukchi Sea by G. A. Whitehouse1,2 1Alaska Fisheries Science Center 7600 Sand Point Way N.E. Seattle WA 98115 2Joint Institute for the Study of the Atmosphere and Ocean University of Washington Box 354925 Seattle WA 98195 www.afsc.noaa.gov U.S. DEPARTMENT OF COMMERCE Penny. S. Pritzker, Secretary National Oceanic and Atmospheric Administration Kathryn D. -
Metallothionein Gene Family in the Sea Urchin Paracentrotus Lividus: Gene Structure, Differential Expression and Phylogenetic Analysis
International Journal of Molecular Sciences Article Metallothionein Gene Family in the Sea Urchin Paracentrotus lividus: Gene Structure, Differential Expression and Phylogenetic Analysis Maria Antonietta Ragusa 1,*, Aldo Nicosia 2, Salvatore Costa 1, Angela Cuttitta 2 and Fabrizio Gianguzza 1 1 Department of Biological, Chemical, and Pharmaceutical Sciences and Technologies, University of Palermo, 90128 Palermo, Italy; [email protected] (S.C.); [email protected] (F.G.) 2 Laboratory of Molecular Ecology and Biotechnology, National Research Council-Institute for Marine and Coastal Environment (IAMC-CNR) Detached Unit of Capo Granitola, Torretta Granitola, 91021 Trapani, Italy; [email protected] (A.N.); [email protected] (A.C.) * Correspondence: [email protected]; Tel.: +39-091-238-97401 Academic Editor: Masatoshi Maki Received: 6 March 2017; Accepted: 5 April 2017; Published: 12 April 2017 Abstract: Metallothioneins (MT) are small and cysteine-rich proteins that bind metal ions such as zinc, copper, cadmium, and nickel. In order to shed some light on MT gene structure and evolution, we cloned seven Paracentrotus lividus MT genes, comparing them to Echinodermata and Chordata genes. Moreover, we performed a phylogenetic analysis of 32 MTs from different classes of echinoderms and 13 MTs from the most ancient chordates, highlighting the relationships between them. Since MTs have multiple roles in the cells, we performed RT-qPCR and in situ hybridization experiments to understand better MT functions in sea urchin embryos. Results showed that the expression of MTs is regulated throughout development in a cell type-specific manner and in response to various metals. The MT7 transcript is expressed in all tissues, especially in the stomach and in the intestine of the larva, but it is less metal-responsive. -
Variation in Growth Pattern in the Sand Dollar, Echinarachnius Parma, (Lamarck)
University of New Hampshire University of New Hampshire Scholars' Repository Doctoral Dissertations Student Scholarship Summer 1964 VARIATION IN GROWTH PATTERN IN THE SAND DOLLAR, ECHINARACHNIUS PARMA, (LAMARCK) PRASERT LOHAVANIJAYA University of New Hampshire, Durham Follow this and additional works at: https://scholars.unh.edu/dissertation Recommended Citation LOHAVANIJAYA, PRASERT, "VARIATION IN GROWTH PATTERN IN THE SAND DOLLAR, ECHINARACHNIUS PARMA, (LAMARCK)" (1964). Doctoral Dissertations. 2339. https://scholars.unh.edu/dissertation/2339 This Dissertation is brought to you for free and open access by the Student Scholarship at University of New Hampshire Scholars' Repository. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of University of New Hampshire Scholars' Repository. For more information, please contact [email protected]. This dissertation has been 65-950 microfilmed exactly as received LOHAVANIJAYA, Prasert, 1935- VARIATION IN GROWTH PATTERN IN THE SAND DOLLAR, ECHJNARACHNIUS PARMA, (LAMARCK). University of New Hampshire, Ph.D., 1964 Zoology University Microfilms, Inc., Ann Arbor, Michigan VARIATION IN GROWTH PATTERN IN THE SAND DOLLAR, EC’HINARACHNIUS PARMA, (LAMARCK) BY PRASERT LOHAVANUAYA B. Sc. , (Honors), Chulalongkorn University, 1959 M.S., University of New Hampshire, 1961 A THESIS Submitted to the University of New Hampshire In Partial Fulfillment of The Requirements for the Degree of Doctor of Philosophy Graduate School Department of Zoology June, 1964 This thesis has been examined and approved. May 2 2, 1 964. Date An Abstract of VARIATION IN GROWTH PATTERN IN THE SAND DOLLAR, ECHINARACHNIUS PARMA, (LAMARCK) This study deals with Echinarachnius parma, the common sand dollar of the New England coast. Some problems concerning taxonomy and classification of this species are considered. -
A Phylogenomic Resolution of the Sea Urchin Tree of Life
bioRxiv preprint doi: https://doi.org/10.1101/430595; this version posted September 29, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. A phylogenomic resolution of the sea urchin tree of life Nicolás Mongiardino Koch ([email protected]) – Corresponding author Department of Geology and Geophysics, Yale University, New Haven CT, USA Simon E. Coppard ([email protected]) Department of Biology, Hamilton College, Clinton NY, USA. Smithsonian Tropical Research Institute, Balboa, Panama. Harilaos A. Lessios ([email protected]) Smithsonian Tropical Research Institute, Balboa, Panama. Derek E. G. Briggs ([email protected]) Department of Geology and Geophysics, Yale University, New Haven CT, USA. Peabody Museum of Natural History, Yale University, New Haven CT, USA. Rich Mooi ([email protected]) Department of Invertebrate Zoology and Geology, California Academy of Sciences, San Francisco CA, USA. Greg W. Rouse ([email protected]) Scripps Institution of Oceanography, UC San Diego, La Jolla CA, USA. bioRxiv preprint doi: https://doi.org/10.1101/430595; this version posted September 29, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract Background: Echinoidea is a clade of marine animals including sea urchins, heart urchins, sand dollars and sea biscuits. -
Phylogenomic Analyses of Echinoid Diversification Prompt a Re
bioRxiv preprint doi: https://doi.org/10.1101/2021.07.19.453013; this version posted August 4, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Phylogenomic analyses of echinoid diversification prompt a re- 2 evaluation of their fossil record 3 Short title: Phylogeny and diversification of sea urchins 4 5 Nicolás Mongiardino Koch1,2*, Jeffrey R Thompson3,4, Avery S Hatch2, Marina F McCowin2, A 6 Frances Armstrong5, Simon E Coppard6, Felipe Aguilera7, Omri Bronstein8,9, Andreas Kroh10, Rich 7 Mooi5, Greg W Rouse2 8 9 1 Department of Earth & Planetary Sciences, Yale University, New Haven CT, USA. 2 Scripps Institution of 10 Oceanography, University of California San Diego, La Jolla CA, USA. 3 Department of Earth Sciences, 11 Natural History Museum, Cromwell Road, SW7 5BD London, UK. 4 University College London Center for 12 Life’s Origins and Evolution, London, UK. 5 Department of Invertebrate Zoology and Geology, California 13 Academy of Sciences, San Francisco CA, USA. 6 Bader International Study Centre, Queen's University, 14 Herstmonceux Castle, East Sussex, UK. 7 Departamento de Bioquímica y Biología Molecular, Facultad de 15 Ciencias Biológicas, Universidad de Concepción, Concepción, Chile. 8 School of Zoology, Faculty of Life 16 Sciences, Tel Aviv University, Tel Aviv, Israel. 9 Steinhardt Museum of Natural History, Tel-Aviv, Israel. 10 17 Department of Geology and Palaeontology, Natural History Museum Vienna, Vienna, Austria 18 * Corresponding author. -
Phylogenomic Analyses of Echinoid Diversification Prompt a Re
bioRxiv preprint doi: https://doi.org/10.1101/2021.07.19.453013; this version posted July 24, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Phylogenomic analyses of echinoid diversification prompt a re- 2 evaluation of their fossil record 3 Short title: Phylogeny and diversification of sea urchins 4 5 Nicolás Mongiardino Koch1,2*, Jeffrey R Thompson3,4, Avery S Hatch2, Marina F McCowin2, A 6 Frances Armstrong5, Simon E Coppard6, Felipe Aguilera7, Omri Bronstein8,9, Andreas Kroh10, Rich 7 Mooi5, Greg W Rouse2 8 9 1 Department of Earth & Planetary Sciences, Yale University, New Haven CT, USA. 2 Scripps Institution of 10 Oceanography, University of California San Diego, La Jolla CA, USA. 3 Department of Earth Sciences, 11 Natural History Museum, Cromwell Road, SW7 5BD London, UK. 4 University College London Center for 12 Life’s Origins and Evolution, London, UK. 5 Department of Invertebrate Zoology and Geology, California 13 Academy of Sciences, San Francisco CA, USA. 6 Bader International Study Centre, Queen's University, 14 Herstmonceux Castle, East Sussex, UK. 7 Departamento de Bioquímica y Biología Molecular, Facultad de 15 Ciencias Biológicas, Universidad de Concepción, Concepción, Chile. 8 School of Zoology, Faculty of Life 16 Sciences, Tel Aviv University, Tel Aviv, Israel. 9 Steinhardt Museum of Natural History, Tel-Aviv, Israel. 10 17 Department of Geology and Palaeontology, Natural History Museum Vienna, Vienna, Austria 18 * Corresponding author. -
Spinochrome Identification and Quantification in Pacific Sea Urchin
marine drugs Article Spinochrome Identification and Quantification in Pacific Sea Urchin Shells, Coelomic Fluid and Eggs Using HPLC-DAD-MS Elena A. Vasileva 1,* , Natalia P. Mishchenko 1 , Van T. T. Tran 2, Hieu M. N. Vo 2 and Sergey A. Fedoreyev 1 1 Laboratory of the Chemistry of Natural Quinonoid Compounds, G.B. Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch of Russian Academy of Sciences, 690022 Vladivostok, Russia; [email protected] (N.P.M.); [email protected] (S.A.F.) 2 Nhatrang Institute of Technology Research and Application, VAST, Khanh Hoa 650000, Vietnam; [email protected] (V.T.T.T.); [email protected] (H.M.N.V.) * Correspondence: [email protected]; Tel.: +7-902-527-2055 Abstract: The high-performance liquid chromatography method coupled with diode array and mass spectrometric detector (HPLC-DAD-MS) method for quinonoid pigment identification and quantification in sea urchin samples was developed and validated. The composition and quantitative ratio of the quinonoid pigments of the shells of 16 species of sea urchins, collected in the temperate (Sea of Japan) and tropical (South-China Sea) climatic zones of the Pacific Ocean over several years, were studied. The compositions of the quinonoid pigments of sea urchins Maretia planulata, Scaphechinus griseus, Laganum decagonale and Phyllacanthus imperialis were studied for the first time. A study of the composition of the quinonoid pigments of the coelomic fluid of ten species of sea urchins was conducted. The composition of quinonoid pigments of Echinarachnius parma jelly-like egg membrane, of Scaphechinus mirabilis developing embryos and pluteus, was reported for the first time. -
Ecosystems and Resources of the Massachusetts Coast
ECOSYSTEMS AND RESOURCES, OF THE MASSACHUSETTS COAST .....-_-- .. •. / '- .. ~, \ '.' . - ..... INSTITUTE FOR MAN -,-...,,~,.. :-- .AND ENVIRONMENT - ...........:r"l -;.- / -,-.--"-,, T"'- - 2 24 TABLE OF CONENTS Acknowledgements Introduction 3 We wish to thank the following persons and organizations who generously provided their I The Geology of the Massachusetts Coast 5 time and facilities to help us prepare this document. First to our scientific advisory The Glacial Influence 5 panel, Professors Charles Cole, Dayton Carritt, The Dynamic Coastline 6 Craig Edwards, Paul Godfrey and James Nature's Stabilizers 10 Parrish, of the University of Massachusetts, Amherst, we offer appreciation for their critical II The living Systems of the Coast 11 and patient review of our manuscript. We also The Ecosystem 11 extend our gratitude to the staff of the Massachusetts Coastal Zone Management Ecosystem Management 12 Program, Executive Office of Environmental Salt Marsh 13 Affairs, for their assistance. Others who Eelgrass Beds 16 provided help are: John Dennis, Nantucket; Sand Dunes 17 Ralph Goodno and Thomas Quink, Cooperative Sand Beaches 20 Extension Service; Dr. James Baird, Tidal Flats 23 Massachusetts Audubon; Allen Look, Nor thampton; Clifford Kaye, U.S. Geological Rocky Shores 24 Survey; Dr. Phillip Stanton, Framingham State Composite Ecosystems 26 College; and Dr. Joseph Hartshorn, University Salt Ponds 26 of Massachusetts. Barrier Beaches-Islands 28 Thanks are due also to the Metropolitan Estuaries 29 District Commission and Massachusetts Inventory Maps of Mass. Coast 34 Division of Forests and Parks for providing us boat trips in Boston Harbor; and Carlozzi, Sinton and Vilkitis, Inc. for the use of their four III Coastal Resources and Their Cultural Uses 44 wheel drive vehicle. -
Risk and Resilience: Variations in Magnesium in Echinoid Skeletal Calcite
Vol. 561: 1–16, 2016 MARINE ECOLOGY PROGRESS SERIES Published December 15 doi: 10.3354/meps11908 Mar Ecol Prog Ser OPENPEN ACCESSCCESS FEATURE ARTICLE Risk and resilience: variations in magnesium in echinoid skeletal calcite Abigail M. Smith1,*, Dana E. Clark1,4, Miles D. Lamare1, David J. Winter2,5, Maria Byrne3 1Department of Marine Science, University of Otago, PO Box 56, Dunedin 9054, New Zealand 2Department of Zoology, University of Otago, PO Box 56, Dunedin 9054, New Zealand 3University of Sydney, New South Wales 2006, Australia 4Present address: Cawthron Institute, Private Bag 2, Nelson 7042, New Zealand 5Present address: Institute of Fundamental Sciences, Massey University, Private Bag 11 222, Palmerston North 4442, New Zealand ABSTRACT: Echinoids have high-magnesium (Mg) calcite endoskeletons that may be vulnerable to CO2- driven ocean acidification. Amalgamated data for echinoid species from a range of environments and life-history stages allowed characterization of the factors controlling Mg content in their skeletons. Pub- lished measurements of Mg in calcite (N = 261), sup- plemented by new X-ray diffractometry data (N = 382), produced a database including 8 orders, 23 families and 73 species (~7% of the ~1000 known extant spe- cies), spanning latitudes 77° S to 72° N, and including 9 skeletal elements or life stages. Mean (± SD) skeletal carbonate mineralogy in the Echinoidea is 7.5 ± 3.23 Magnesian calcite skeletons of the New Zealand endemic wt% MgCO3 in calcite (range: 1.5−16.4 wt%, N = 643). sea urchin Evechinus choloroticus may be vulnerable to Variation in Mg within individuals was small (SD = ocean acidification. 0.4−0.9 wt% MgCO3). -
Of Living and Fossil Echinoids 1924-1970
Index of Living and Fossil Echinoids 1924-1970 PORTER M. KIER and MARY HURD LAWSON SMITHSONIAN CONTRIBUTIONS TO PALEOBIOLOGY NUMBER 34 SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of "diffusing knowledge" was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This theme of basic research has been adhered to through the years by thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoology Smithsonian Studies in Air and Space Smithsonian Studies in History and Technology In these series, the Institution publishes small papers and full-scale monographs that report the research and collections of its various museums and bureaux or of professional colleagues in the world cf science and scholarship. The publications are distributed by mailing lists to libraries, universities, and similar institutions throughout the world. Papers or monographs submitted for series publication are received by the Smithsonian Institution Press, subject to its own review for format and style, only through departments of the various Smithsonian museums or bureaux, where the manuscripts are given substantive review. -
BLBRA Annexes
Bras d’Or Lake Biosphere Reserve Periodic Review – Initial Submission Annexes Only February 2021 1 1 Biosphere Reserve Periodic Review, January 2021 Bras d’Or Lake Biosphere Reserve Annexes I - VI Table of Content Annex I: MABnet Directory of the Biosphere Reserves 3 Annex II: Promotion and Communication Materials 8 Annex III: Statutory Framework of the World Network of Biosphere Reserves 11 Annex IV: Species Lists and Letters of Support 16 Species of Concern 17 Full List of Species 26 Letters of Support 86 Annex V: Details of Core Areas 133 Annex VI: Bibliography 140 2 2 2 Annex I to the Biosphere Reserve Periodic Review, Updated January 2021 Bras d’Or Lake Biosphere Reserve MABnet Directory of Biosphere Reserves **PLEASE NOTE THAT THIS SECTION WILL BE REVISITED BY THE BLBRA** AFTER THE INITIAL FEEDBACK FROM THE REVIEWING COMMITTEE A FINAL TEXT WILL BE PROVIDED FOR THE DESCRIPTION, MAIN OBJECTIVES, RESEARCH AND MONITORING SECTIONS TO BE UPDATED TO THE UNESCO WEBSITE Administrative details Country: Canada Name of BR: Bras d’Or Lake Biosphere Reserve Year designated: 2011 Administrative authorities: Various agencies of government (federal and provincial), such as Fisheries, Environment, Natural Resources, Rural and Economic Development, and Agriculture. Name Contact: Eileen Crosby, Chair of the Board of Directors, Bras d’Or Lake Biosphere Reserve Association Contact address: PO Box 404 East Bay Main PO East Bay, NS B1J 2E2 CANADA Tél.: 1-902-574-5185 Email: [email protected] Related links: www.blbra.ca Social networks: Facebook: @blbra Facebook Bras d’Or Watch: @BrasdOrWatch Instagram: #brasdorlakebiosphere Twitter: @BL_Biosphere Description General description: The Bras d’Or Lake Biosphere Reserve is located in Nova Scotia and consists of a salt-water estuary watershed ‘inland sea‘ with three passages to the Atlantic Ocean. -
Holistic Morphometric Analysis of Growth of the Sand Dollar Echinarachnius Parma (Echinodermata:Echinoidea:Clypeasteroida)
Zootaxa 4052 (2): 151–179 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2015 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.4052.2.1 http://zoobank.org/urn:lsid:zoobank.org:pub:3D92BEC3-F344-470F-AE21-94978465F1EA Holistic morphometric analysis of growth of the sand dollar Echinarachnius parma (Echinodermata:Echinoidea:Clypeasteroida) LOUIS G. ZACHOS Department of Geology and Geological Engineering, University of Mississippi, University, MS 38677, USA. E-mail: [email protected] Abstract Holistic morphometrics is a term implying complete shape characterization of all of the structural parts of an organism. The skeleton of an echinoid is comprised of hundreds of individual plates arranged in a closed 3-dimensional mosaic form- ing the test. GIS software and techniques were used to generate topologically correct digital models of an ontogenetic se- ries of specimens of the sand dollar echinoid Echinarachnius parma. Plate growth can be considered in proportion to overall skeleton growth, resulting in a linear model of relative growth. Alternatively, separate logistic equations can be fit to the ontogenetic series of homologous plate areas using nonlinear least squares regression to result in a model for instan- taneous growth. The linear and logistic parameters of the models describe the allometric growth of plates from different viewpoints. Growth is shown to fall into characteristic patterns defining distinct plate growth domains associated with de- velopment of the imago (larval) skeleton just prior to metamorphosis, early growth associated with expansion of the co- rona and fold-over (forming the flattened body form), juvenile growth and formation of petals, and adult growth.