A New Species of Orthonectida That Parasitizes Xenoturbella Bocki: Implications for Studies on Xenoturbella
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Systema Naturae∗
Systema Naturae∗ c Alexey B. Shipunov v. 5.802 (June 29, 2008) 7 Regnum Monera [ Bacillus ] /Bacteria Subregnum Bacteria [ 6:8Bacillus ]1 Superphylum Posibacteria [ 6:2Bacillus ] stat.m. Phylum 1. Firmicutes [ 6Bacillus ]2 Classis 1(1). Thermotogae [ 5Thermotoga ] i.s. 2(2). Mollicutes [ 5Mycoplasma ] 3(3). Clostridia [ 5Clostridium ]3 4(4). Bacilli [ 5Bacillus ] 5(5). Symbiobacteres [ 5Symbiobacterium ] Phylum 2. Actinobacteria [ 6Actynomyces ] Classis 1(6). Actinobacteres [ 5Actinomyces ] Phylum 3. Hadobacteria [ 6Deinococcus ] sed.m. Classis 1(7). Hadobacteres [ 5Deinococcus ]4 Superphylum Negibacteria [ 6:2Rhodospirillum ] stat.m. Phylum 4. Chlorobacteria [ 6Chloroflexus ]5 Classis 1(8). Ktedonobacteres [ 5Ktedonobacter ] sed.m. 2(9). Thermomicrobia [ 5Thermomicrobium ] 3(10). Chloroflexi [ 5Chloroflexus ] ∗Only recent taxa. Viruses are not included. Abbreviations and signs: sed.m. (sedis mutabilis); stat.m. (status mutabilis): s., aut i. (superior, aut interior); i.s. (incertae sedis); sed.p. (sedis possibilis); s.str. (sensu stricto); s.l. (sensu lato); incl. (inclusum); excl. (exclusum); \quotes" for environmental groups; * (asterisk) for paraphyletic taxa; / (slash) at margins for major clades (\domains"). 1Incl. \Nanobacteria" i.s. et dubitativa, \OP11 group" i.s. 2Incl. \TM7" i.s., \OP9", \OP10". 3Incl. Dictyoglomi sed.m., Fusobacteria, Thermolithobacteria. 4= Deinococcus{Thermus. 5Incl. Thermobaculum i.s. 1 4(11). Dehalococcoidetes [ 5Dehalococcoides ] 5(12). Anaerolineae [ 5Anaerolinea ]6 Phylum 5. Cyanobacteria [ 6Nostoc ] Classis 1(13). Gloeobacteres [ 5Gloeobacter ] 2(14). Chroobacteres [ 5Chroococcus ]7 3(15). Hormogoneae [ 5Nostoc ] Phylum 6. Bacteroidobacteria [ 6Bacteroides ]8 Classis 1(16). Fibrobacteres [ 5Fibrobacter ] 2(17). Chlorobi [ 5Chlorobium ] 3(18). Salinibacteres [ 5Salinibacter ] 4(19). Bacteroidetes [ 5Bacteroides ]9 Phylum 7. Spirobacteria [ 6Spirochaeta ] Classis 1(20). Spirochaetes [ 5Spirochaeta ] s.l.10 Phylum 8. Planctobacteria [ 6Planctomyces ]11 Classis 1(21). -
New Zealand's Genetic Diversity
1.13 NEW ZEALAND’S GENETIC DIVERSITY NEW ZEALAND’S GENETIC DIVERSITY Dennis P. Gordon National Institute of Water and Atmospheric Research, Private Bag 14901, Kilbirnie, Wellington 6022, New Zealand ABSTRACT: The known genetic diversity represented by the New Zealand biota is reviewed and summarised, largely based on a recently published New Zealand inventory of biodiversity. All kingdoms and eukaryote phyla are covered, updated to refl ect the latest phylogenetic view of Eukaryota. The total known biota comprises a nominal 57 406 species (c. 48 640 described). Subtraction of the 4889 naturalised-alien species gives a biota of 52 517 native species. A minimum (the status of a number of the unnamed species is uncertain) of 27 380 (52%) of these species are endemic (cf. 26% for Fungi, 38% for all marine species, 46% for marine Animalia, 68% for all Animalia, 78% for vascular plants and 91% for terrestrial Animalia). In passing, examples are given both of the roles of the major taxa in providing ecosystem services and of the use of genetic resources in the New Zealand economy. Key words: Animalia, Chromista, freshwater, Fungi, genetic diversity, marine, New Zealand, Prokaryota, Protozoa, terrestrial. INTRODUCTION Article 10b of the CBD calls for signatories to ‘Adopt The original brief for this chapter was to review New Zealand’s measures relating to the use of biological resources [i.e. genetic genetic resources. The OECD defi nition of genetic resources resources] to avoid or minimize adverse impacts on biological is ‘genetic material of plants, animals or micro-organisms of diversity [e.g. genetic diversity]’ (my parentheses). -
Amphipholis Squamata MICHAEL P
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Aug. 1990, p. 2436-2440 Vol. 56, No. 8 0099-2240/90/082436-05$02.00/0 Copyright C) 1990, American Society for Microbiology Description of a Novel Symbiotic Bacterium from the Brittle Star, Amphipholis squamata MICHAEL P. LESSERt* AND RICHARD P. BLAKEMORE Department of Microbiology, University of New Hampshire, Durham, New Hampshire 03824 Received 8 November 1989/Accepted 3 June 1990 A gram-negative, marine, facultatively anaerobic bacterial isolate designated strain AS-1 was isolated from the subcuticular space of the brittle star, Amphipholis squamata. Its sensitivity to 0/129 and novobiocin, overall morphology, and biochemical characteristics and the moles percent guanine-plus-cytosine composition of its DNA (42.9 to 44.4) suggest that this isolate should be placed in the genus Vibrio. Strain AS-1 was not isolated from ambient seawater and is distinct from described Vibrio species. This symbiotic bacterium may assist its host as one of several mechanisms of nutrient acquisition during the brooding of developing embryos. The biology of bacterium-invertebrate symbiotic associa- isopropyl alcohol for 30 s and two rinses in sterile ASW. tions has elicited considerable interest, particularly since the Logarithmic dilutions were plated on Zobell modified 2216E discoveries during the past decade of chemoautotrophic medium (ASW, 1 g of peptone liter-1, 1 g of yeast extract symbiotic bacteria associated with several invertebrate spe- liter-' [pH 7.8 to 8.4]) (29), as were samples of ambient cies in sulfide-rich habitats (4, 5). Bacterial-invertebrate seawater from the site of collection and ASW controls. All symbioses (mutualistic) have been reported from many materials and equipment were sterilized, and all procedures invertebrate taxa, examples of which include cellulolytic were performed by aseptic techniques. -
Number of Living Species in Australia and the World
Numbers of Living Species in Australia and the World 2nd edition Arthur D. Chapman Australian Biodiversity Information Services australia’s nature Toowoomba, Australia there is more still to be discovered… Report for the Australian Biological Resources Study Canberra, Australia September 2009 CONTENTS Foreword 1 Insecta (insects) 23 Plants 43 Viruses 59 Arachnida Magnoliophyta (flowering plants) 43 Protoctista (mainly Introduction 2 (spiders, scorpions, etc) 26 Gymnosperms (Coniferophyta, Protozoa—others included Executive Summary 6 Pycnogonida (sea spiders) 28 Cycadophyta, Gnetophyta under fungi, algae, Myriapoda and Ginkgophyta) 45 Chromista, etc) 60 Detailed discussion by Group 12 (millipedes, centipedes) 29 Ferns and Allies 46 Chordates 13 Acknowledgements 63 Crustacea (crabs, lobsters, etc) 31 Bryophyta Mammalia (mammals) 13 Onychophora (velvet worms) 32 (mosses, liverworts, hornworts) 47 References 66 Aves (birds) 14 Hexapoda (proturans, springtails) 33 Plant Algae (including green Reptilia (reptiles) 15 Mollusca (molluscs, shellfish) 34 algae, red algae, glaucophytes) 49 Amphibia (frogs, etc) 16 Annelida (segmented worms) 35 Fungi 51 Pisces (fishes including Nematoda Fungi (excluding taxa Chondrichthyes and (nematodes, roundworms) 36 treated under Chromista Osteichthyes) 17 and Protoctista) 51 Acanthocephala Agnatha (hagfish, (thorny-headed worms) 37 Lichen-forming fungi 53 lampreys, slime eels) 18 Platyhelminthes (flat worms) 38 Others 54 Cephalochordata (lancelets) 19 Cnidaria (jellyfish, Prokaryota (Bacteria Tunicata or Urochordata sea anenomes, corals) 39 [Monera] of previous report) 54 (sea squirts, doliolids, salps) 20 Porifera (sponges) 40 Cyanophyta (Cyanobacteria) 55 Invertebrates 21 Other Invertebrates 41 Chromista (including some Hemichordata (hemichordates) 21 species previously included Echinodermata (starfish, under either algae or fungi) 56 sea cucumbers, etc) 22 FOREWORD In Australia and around the world, biodiversity is under huge Harnessing core science and knowledge bases, like and growing pressure. -
Download the Abstract Book
1 Exploring the male-induced female reproduction of Schistosoma mansoni in a novel medium Jipeng Wang1, Rui Chen1, James Collins1 1) UT Southwestern Medical Center. Schistosomiasis is a neglected tropical disease caused by schistosome parasites that infect over 200 million people. The prodigious egg output of these parasites is the sole driver of pathology due to infection. Female schistosomes rely on continuous pairing with male worms to fuel the maturation of their reproductive organs, yet our understanding of their sexual reproduction is limited because egg production is not sustained for more than a few days in vitro. Here, we explore the process of male-stimulated female maturation in our newly developed ABC169 medium and demonstrate that physical contact with a male worm, and not insemination, is sufficient to induce female development and the production of viable parthenogenetic haploid embryos. By performing an RNAi screen for genes whose expression was enriched in the female reproductive organs, we identify a single nuclear hormone receptor that is required for differentiation and maturation of germ line stem cells in female gonad. Furthermore, we screen genes in non-reproductive tissues that maybe involved in mediating cell signaling during the male-female interplay and identify a transcription factor gli1 whose knockdown prevents male worms from inducing the female sexual maturation while having no effect on male:female pairing. Using RNA-seq, we characterize the gene expression changes of male worms after gli1 knockdown as well as the female transcriptomic changes after pairing with gli1-knockdown males. We are currently exploring the downstream genes of this transcription factor that may mediate the male stimulus associated with pairing. -
Metabarcoding in the Abyss: Uncovering Deep-Sea Biodiversity Through Environmental
Metabarcoding in the abyss : uncovering deep-sea biodiversity through environmental DNA Miriam Isabelle Brandt To cite this version: Miriam Isabelle Brandt. Metabarcoding in the abyss : uncovering deep-sea biodiversity through environmental DNA. Agricultural sciences. Université Montpellier, 2020. English. NNT : 2020MONTG033. tel-03197842 HAL Id: tel-03197842 https://tel.archives-ouvertes.fr/tel-03197842 Submitted on 14 Apr 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE POUR OBTENIR LE GRADE DE DOCTEUR DE L’UNIVERSITÉ DE M ONTPELLIER En Sciences de l'Évolution et de la Biodiversité École doctorale GAIA Unité mixte de recherche MARBEC Pourquoi Pas les Abysses ? L’ADN environnemental pour l’étude de la biodiversité des grands fonds marins Metabarcoding in the abyss: uncovering deep - sea biodiversity through environmental DNA Présentée par Miriam Isabelle BRANDT Le 10 juillet 2020 Sous la direction de Sophie ARNAUD-HAOND et Daniela ZEPPILLI Devant le jury composé de Sofie DERYCKE, Senior researcher/Professeur rang A, ILVO, Belgique Rapporteur -
Lack of Taxonomic Differentiation in An
ARTICLE IN PRESS Molecular Phylogenetics and Evolution xxx (2005) xxx–xxx www.elsevier.com/locate/ympev Lack of taxonomic diVerentiation in an apparently widespread freshwater isopod morphotype (Phreatoicidea: Mesamphisopidae: Mesamphisopus) from South Africa Gavin Gouws a,¤, Barbara A. Stewart b, Conrad A. Matthee a a Evolutionary Genomics Group, Department of Botany and Zoology, University of Stellenbosch, Private Bag X1, Matieland 7602, South Africa b Centre of Excellence in Natural Resource Management, University of Western Australia, 444 Albany Highway, Albany, WA 6330, Australia Received 20 December 2004; revised 2 June 2005; accepted 2 June 2005 Abstract The unambiguous identiWcation of phreatoicidean isopods occurring in the mountainous southwestern region of South Africa is problematic, as the most recent key is based on morphological characters showing continuous variation among two species: Mesam- phisopus abbreviatus and M. depressus. This study uses variation at 12 allozyme loci, phylogenetic analyses of 600 bp of a COI (cyto- chrome c oxidase subunit I) mtDNA fragment and morphometric comparisons to determine whether 15 populations are conspeciWc, and, if not, to elucidate their evolutionary relationships. Molecular evidence suggested that the most easterly population, collected from the Tsitsikamma Forest, was representative of a yet undescribed species. Patterns of diVerentiation and evolutionary relation- ships among the remaining populations were unrelated to geographic proximity or drainage system. Patterns of isolation by distance were also absent. An apparent disparity among the extent of genetic diVerentiation was also revealed by the two molecular marker sets. Mitochondrial sequence divergences among individuals were comparable to currently recognized intraspeciWc divergences. Sur- prisingly, nuclear markers revealed more extensive diVerentiation, more characteristic of interspeciWc divergences. -
Key to the Common Shallow-Water Brittle Stars (Echinodermata: Ophiuroidea) of the Gulf of Mexico and Caribbean Sea
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/228496999 Key to the common shallow-water brittle stars (Echinodermata: Ophiuroidea) of the Gulf of Mexico and Caribbean Sea Article · January 2007 CITATIONS READS 10 702 1 author: Christopher Pomory University of West Florida 34 PUBLICATIONS 303 CITATIONS SEE PROFILE All content following this page was uploaded by Christopher Pomory on 21 May 2014. The user has requested enhancement of the downloaded file. All in-text references underlined in blue are added to the original document and are linked to publications on ResearchGate, letting you access and read them immediately. 1 Key to the common shallow-water brittle stars (Echinodermata: Ophiuroidea) of the Gulf of Mexico and Caribbean Sea CHRISTOPHER M. POMORY 2007 Department of Biology, University of West Florida, 11000 University Parkway, Pensacola, FL 32514, USA. [email protected] ABSTRACT A key is given for 85 species of ophiuroids from the Gulf of Mexico and Caribbean Sea covering a depth range from the intertidal down to 30 m. Figures highlighting important anatomical features associated with couplets in the key are provided. 2 INTRODUCTION The Caribbean region is one of the major coral reef zoogeographic provinces and a region of intensive human use of marine resources for tourism and fisheries (Aide and Grau, 2004). With the world-wide decline of coral reefs, and deterioration of shallow-water marine habitats in general, ecological and biodiversity studies have become more important than ever before (Bellwood et al., 2004). Ecological and biodiversity studies require identification of collected specimens, often by biologists not specializing in taxonomy, and therefore identification guides easily accessible to a diversity of biologists are necessary. -
Isolation and Identification of Bacterial Endosymbionts in the Brooding Brittle Star Amphipholis Squamata
University of New Hampshire University of New Hampshire Scholars' Repository Honors Theses and Capstones Student Scholarship Spring 2016 Isolation and identification of bacterial endosymbionts in the brooding brittle star Amphipholis squamata Abbey Rose Tedford University of New Hampshire - Main Campus Follow this and additional works at: https://scholars.unh.edu/honors Part of the Bacteriology Commons, Biodiversity Commons, Biology Commons, Environmental Microbiology and Microbial Ecology Commons, Marine Biology Commons, and the Organismal Biological Physiology Commons Recommended Citation Tedford, Abbey Rose, "Isolation and identification of bacterial endosymbionts in the brooding brittle star Amphipholis squamata" (2016). Honors Theses and Capstones. 273. https://scholars.unh.edu/honors/273 This Senior Honors Thesis is brought to you for free and open access by the Student Scholarship at University of New Hampshire Scholars' Repository. It has been accepted for inclusion in Honors Theses and Capstones by an authorized administrator of University of New Hampshire Scholars' Repository. For more information, please contact [email protected]. Isolation and identification of bacterial endosymbionts in the brooding brittle star Amphipholis squamata Abbey Rose Tedford, Kathleen M. Morrow, Michael P. Lesser Department of Molecular, Cellular and Biological Sciences, University of New Hampshire, Durham, NH 03824 Abstract: Symbiotic associations with subcuticular bacteria (SCB) have been identified and studied in numerous echinoderms, including the SCB of the brooding brittle star, Amphipholis squamata. These SCB, however, have not been studied using current next generation sequencing technologies. Previous studies on the SCB of A. squamata placed these bacteria in the genus Vibrio (γ-Proteobacteria), but subsequent studies suggested that the SCB are primarily composed of α-Proteobacteria. -
Evidence That Nuclear Receptors Evolved from Terpene Synthases
bioRxiv preprint doi: https://doi.org/10.1101/2021.06.29.450438; this version posted July 2, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Evidence that nuclear receptors evolved from terpene synthases Douglas R. Houstona, Jane G. Hannaa,e, J. Constance Lathea,f, Stephen G. Hillierc,1, and Richard Lathed,1 aInstitute of Quantitative Biology, Biochemistry, and Biotechnology, School of Biological Sciences, University of Edinburgh, Edinburgh, UK; bProgram in Neuroscience, University of Glasgow, Glasgow, UK; cMedical Research Council Centre for Reproductive Health, University of Edinburgh, Edinburgh, UK; dDivision of Infection Medicine, University of Edinburgh Medical School, Edinburgh, UK; ePresent address: Arab Academy for Science, Technology, and Maritime Transport (AASTMT), Cairo Campus, Cairo, Egypt; fPresent address: Ashfield MedComms, Glasgow, UK 1To whom correspondence may be addressed. Email: [email protected] or [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.06.29.450438; this version posted July 2, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Ligand-activated nuclear receptors (NRs) including steroid receptors orchestrate development, growth, and reproduction across all animal lifeforms – the Metazoa – but how NRs evolved remains mysterious. Given the universality of terpenoids – including steroids and retinoids – as activating NR ligands, we asked if NRs might have evolved from enzymes that catalyze terpene synthesis and metabolism. We provide evidence suggesting that NRs are a sub-branch of the terpene synthase (TS) enzyme superfamily. -
A Tale of Two Biodiversity Levels Inferred from DNA Barcoding Of
UNIVERSITÉ DU QUÉBEC À RIMOUSKI A TALE OF TWO BIODIVERSITY LEVELS INFERRED FROM DNA BARCODING OF SELECTED NORTH ATLANTIC CRUSTACEANS DISSERTATION PRESENTED AS PARTIAL REQUIREMENT OF THE DOCTORATE OF BIOLOGY EXTENDED FROM UNIVERSITÉ DU QUÉBEC À MONTRÉAL BY ADRIANA E. RADULOVICI MARCH 2012 UNIVERSITÉ DU QUÉBEC À MONTRÉAL Service des bibliothèques Avertissement La diffusion de cette thèse se fait dans le rèspect des droits de son auteur, qui a signé le formulaire Autorisation de reproduire et de diffuser un travail de recherche de cycles supérieurs (SDU-522- Rév.01-2006). Cette autorisation stipule que «conformément à l'article 11 du Règlement no 8 des études de cycles supérieurs, [l'auteur] concède à l'Université du Québec à Montréal une licence non exclusive d'utilisation et de publication de la totalité ou d'une partie importante de [son] travail de recherche pour des fins pédagogiques et non commerciales. Plus précisément, [l'auteur] autorise l'Université du Québec à Montréal à reproduire, diffuser, prêter, distribuer ou vendre des copies de [son] travail de recherche à des fins non commerciales sur quelque support que ce soit, y compris l'lnternE?t. Cette licence et cette autorisation n'entraînent pas une renonciation de [la] part [de l'auteur] à [ses] droits moraux ni à [ses] droits de propriété intellectuelle. Sauf entente contraire, [l'auteur] conserve la liberté de diffuser et de commercialiser ou non ce travail dont [il] possède un exemplaire.» UNIVERSITÉ DU QUÉBEC À RIMOUSKI L'HISTOIRE DE DEUX NIVEAUX DE BIODIVERSITÉ DEMONTRÉE PAR LE CODE-BARRE D'ADN CHEZ LES CRUSTACÉS DE L'ATLANTIQUE DU NORD THÉ SE PRÉSENTÉE COMME EXIGENCE PARTIELLE DU DOCTORAT EN BIOLOGIE EXTENSIONNÉ DE L'UNIVERSITÉ DU QUÉBEC À MONTRÉAL PAR ADRIANA E. -
Final Report Form
Appendix K – OSRI Grant Policy Manual Final Report Form - Oil Spill Recovery Institute An electronic copy of this report shall be submitted by mail, or e-mail to the OSRI Research Program Manager [email protected] and Financial Office [email protected] Mailing address: P.O. Box 705 - Cordova, AK 99574 - Deadline for this report: Submittal within 90 days of grant/award expiration. Also, note that a summary Financial Statement shall be submitted within 45 days of the grant expiration. The final invoice and financial statement is due within 90 days of the grant/award expiration. Today’s date: 15 April 2014 Name of awardee/grantee: Bodil Bluhm OSRI Contract Number: 11-10-14 Project title: Data rescue: Epibenthic invertebrates from the Beaufort Sea sampled during WEBSEC and OCS cruises in the 1970s Dates project began and ended: PART I - Outline for Final Program or Technical Report This report must be submitted by all grantees. However, for those whose project work resulted in a peer reviewed publication (whether in draft or final form), this report may be abbreviated and the publication attached as part of the report. A. Non-technical Abstract or summary of project work that does not exceed 2 pages and includes an overview of the project. This abstract should describe the nature and significance of the project. It may be provided to the Advisory Board and could be used by OSRI staff to answer inquiries as to the nature and significance of the project. This project sought to rescue data on epibenthic invertebrates and fish sampled by trawls and photographs in the Alaskan Beaufort Sea during Western Beaufort Sea Ecological Cruise (WEBSEC) and Outer Continental Shelf (OCS) surveys in the 1970s.