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Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
Perth Urban Bushland Fungi Field Book
Perth Urban Bushland Fungi Field Book (A Self-Managed Format) Author Neale L. Bougher Format and Electronic Design John R. Weaver Publisher: Perth Urban Bushland Fungi 3rd Edition, 2007 Foundation 1st Edition May 2005 2nd Edition November 2005 3rd Edition February 2007 This book is Copyright. Approval is granted to reproduce this Field Book in whole or in part, for personal and educational purposes only. The Field Book may be downloaded from the Perth Urban Bushland Fungi web site at: http://www.fungiperth.org.au/fieldbook/cat_index.html With the exception of its use for personal and/or educational purposes, electronic storage of data or images from the printed or web site versions of this book and retrieval or transmission in any form from such storage is not permitted. Written permission is required prior to any potential commercial applications or non- personal reproduction or distribution. Enquiries should be made to Perth Urban Bushland Fungi, Western Australian Herbarium, Department of Environment and Conservation, Locked Bag 104, Bentley Delivery Centre, Western Australia 6983. Copyright © text: Neale L. Bougher Copyright © photographs: Neale L. Bougher (unless otherwise stated). Copyright © electronic & printed layout & design: John R. Weaver This book may be cited as: Bougher N.L. (2006). Perth Urban Bushland Fungi Field Book. Perth Urban Bushland Fungi, Perth Western Australia. (Online), from: http://www.fungiperth.org.au/fieldbook/cat_index.html (2 February 2007). © Perth Urban Bushland Fungi - Field Book / Last updated 2/02/2007 Page ii Acknowledgements PUBF activities are the result of a core team comprising Neale Bougher (Mycologist), John Weaver (Formatting and Electronic Presentation and Data Management), Roz Hart (Community Education Officer) and Sarah de Bueger (Project Officer, 2006) with past assistance from Jac Keelan-Wake (Administrative Support 2004-2005). -
Diversity of Polyporales in the Malay Peninsular and the Application of Ganoderma Australe (Fr.) Pat
DIVERSITY OF POLYPORALES IN THE MALAY PENINSULAR AND THE APPLICATION OF GANODERMA AUSTRALE (FR.) PAT. IN BIOPULPING OF EMPTY FRUIT BUNCHES OF ELAEIS GUINEENSIS MOHAMAD HASNUL BIN BOLHASSAN FACULTY OF SCIENCE UNIVERSITY OF MALAYA KUALA LUMPUR 2013 DIVERSITY OF POLYPORALES IN THE MALAY PENINSULAR AND THE APPLICATION OF GANODERMA AUSTRALE (FR.) PAT. IN BIOPULPING OF EMPTY FRUIT BUNCHES OF ELAEIS GUINEENSIS MOHAMAD HASNUL BIN BOLHASSAN THESIS SUBMITTED IN FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY INSTITUTE OF BIOLOGICAL SCIENCES FACULTY OF SCIENCE UNIVERSITY OF MALAYA KUALA LUMPUR 2013 UNIVERSITI MALAYA ORIGINAL LITERARY WORK DECLARATION Name of Candidate: MOHAMAD HASNUL BIN BOLHASSAN (I.C No: 830416-13-5439) Registration/Matric No: SHC080030 Name of Degree: DOCTOR OF PHILOSOPHY Title of Project Paper/Research Report/Disertation/Thesis (“this Work”): DIVERSITY OF POLYPORALES IN THE MALAY PENINSULAR AND THE APPLICATION OF GANODERMA AUSTRALE (FR.) PAT. IN BIOPULPING OF EMPTY FRUIT BUNCHES OF ELAEIS GUINEENSIS. Field of Study: MUSHROOM DIVERSITY AND BIOTECHNOLOGY I do solemnly and sincerely declare that: 1) I am the sole author/writer of this work; 2) This Work is original; 3) Any use of any work in which copyright exists was done by way of fair dealing and for permitted purposes and any excerpt or extract from, or reference to or reproduction of any copyright work has been disclosed expressly and sufficiently and the title of the Work and its authorship have been acknowledge in this Work; 4) I do not have any actual -
Major Clades of Agaricales: a Multilocus Phylogenetic Overview
Mycologia, 98(6), 2006, pp. 982–995. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 Major clades of Agaricales: a multilocus phylogenetic overview P. Brandon Matheny1 Duur K. Aanen Judd M. Curtis Laboratory of Genetics, Arboretumlaan 4, 6703 BD, Biology Department, Clark University, 950 Main Street, Wageningen, The Netherlands Worcester, Massachusetts, 01610 Matthew DeNitis Vale´rie Hofstetter 127 Harrington Way, Worcester, Massachusetts 01604 Department of Biology, Box 90338, Duke University, Durham, North Carolina 27708 Graciela M. Daniele Instituto Multidisciplinario de Biologı´a Vegetal, M. Catherine Aime CONICET-Universidad Nacional de Co´rdoba, Casilla USDA-ARS, Systematic Botany and Mycology de Correo 495, 5000 Co´rdoba, Argentina Laboratory, Room 304, Building 011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350 Dennis E. Desjardin Department of Biology, San Francisco State University, Jean-Marc Moncalvo San Francisco, California 94132 Centre for Biodiversity and Conservation Biology, Royal Ontario Museum and Department of Botany, University Bradley R. Kropp of Toronto, Toronto, Ontario, M5S 2C6 Canada Department of Biology, Utah State University, Logan, Utah 84322 Zai-Wei Ge Zhu-Liang Yang Lorelei L. Norvell Kunming Institute of Botany, Chinese Academy of Pacific Northwest Mycology Service, 6720 NW Skyline Sciences, Kunming 650204, P.R. China Boulevard, Portland, Oregon 97229-1309 Jason C. Slot Andrew Parker Biology Department, Clark University, 950 Main Street, 127 Raven Way, Metaline Falls, Washington 99153- Worcester, Massachusetts, 01609 9720 Joseph F. Ammirati Else C. Vellinga University of Washington, Biology Department, Box Department of Plant and Microbial Biology, 111 355325, Seattle, Washington 98195 Koshland Hall, University of California, Berkeley, California 94720-3102 Timothy J. -
Molecular Phylogeny of Laetiporus and Other Brown Rot Polypore Genera in North America
Mycologia, 100(3), 2008, pp. 417–430. DOI: 10.3852/07-124R2 # 2008 by The Mycological Society of America, Lawrence, KS 66044-8897 Molecular phylogeny of Laetiporus and other brown rot polypore genera in North America Daniel L. Lindner1 Key words: evolution, Fungi, Macrohyporia, Mark T. Banik Polyporaceae, Poria, root rot, sulfur shelf, Wolfiporia U.S.D.A. Forest Service, Madison Field Office of the extensa Northern Research Station, Center for Forest Mycology Research, One Gifford Pinchot Drive, Madison, Wisconsin 53726 INTRODUCTION The genera Laetiporus Murrill, Leptoporus Que´l., Phaeolus (Pat.) Pat., Pycnoporellus Murrill and Wolfi- Abstract: Phylogenetic relationships were investigat- poria Ryvarden & Gilb. contain species that possess ed among North American species of Laetiporus, simple septate hyphae, cause brown rots and produce Leptoporus, Phaeolus, Pycnoporellus and Wolfiporia annual, polyporoid fruiting bodies with hyaline using ITS, nuclear large subunit and mitochondrial spores. These shared morphological and physiologi- small subunit rDNA sequences. Members of these cal characters have been considered important in genera have poroid hymenophores, simple septate traditional polypore taxonomy (e.g. Gilbertson and hyphae and cause brown rots in a variety of substrates. Ryvarden 1986, Gilbertson and Ryvarden 1987, Analyses indicate that Laetiporus and Wolfiporia are Ryvarden 1991). However recent molecular work not monophyletic. All North American Laetiporus indicates that Laetiporus, Phaeolus and Pycnoporellus species formed a well supported monophyletic group fall within the ‘‘Antrodia clade’’ of true polypores (the ‘‘core Laetiporus clade’’ or Laetiporus s.s.) with identified by Hibbett and Donoghue (2001) while the exception of L. persicinus, which showed little Leptoporus and Wolfiporia fall respectively within the affinity for any genus for which sequence data are ‘‘phlebioid’’ and ‘‘core polyporoid’’ clades of true available. -
Peziza and Pezizaceae Inferred from Multiple Nuclear Genes: RPB2, -Tubulin, and LSU Rdna
Molecular Phylogenetics and Evolution 36 (2005) 1–23 www.elsevier.com/locate/ympev Evolutionary relationships of the cup-fungus genus Peziza and Pezizaceae inferred from multiple nuclear genes: RPB2, -tubulin, and LSU rDNA Karen Hansen ¤, Katherine F. LoBuglio, Donald H. PWster Harvard University Herbaria, Cambridge, MA 02138, USA Received 5 May 2004; revised 17 December 2004 Available online 22 April 2005 Abstract To provide a robust phylogeny of Pezizaceae, partial sequences from two nuclear protein-coding genes, RPB2 (encoding the sec- ond largest subunit of RNA polymerase II) and -tubulin, were obtained from 69 and 72 specimens, respectively, to analyze with nuclear ribosomal large subunit RNA gene sequences (LSU). The three-gene data set includes 32 species of Peziza, and 27 species from nine additional epigeous and six hypogeous (truZe) pezizaceous genera. Analyses of the combined LSU, RPB2, and -tubulin data set using parsimony, maximum likelihood, and Bayesian approaches identify 14 Wne-scale lineages within Pezizaceae. Species of Peziza occur in eight of the lineages, spread among other genera of the family, conWrming the non-monophyly of the genus. Although parsimony analyses of the three-gene data set produced a nearly completely resolved strict consensus tree, with increased conWdence, relationships between the lineages are still resolved with mostly weak bootstrap support. Bayesian analyses of the three- gene data, however, show support for several more inclusive clades, mostly congruent with Bayesian analyses of RPB2. No strongly supported incongruence was found among phylogenies derived from the separate LSU, RPB2, and -tubulin data sets. The RPB2 region appeared to be the most informative single gene region based on resolution and clade support, and accounts for the greatest number of potentially parsimony informative characters within the combined data set, followed by the LSU and the -tubulin region. -
Gymnosperms) of New York State
QK 129 . C667 1992 Pinophyta (Gymnosperms) of New York State Edward A. Cope The L. H. Bailey Hortorium Cornell University Contributions to a Flora of New York State IX Richard S. Mitchell, Editor 1992 Bulletin No. 483 New York State Museum The University of the State of New York THE STATE EDUCATION DEPARTMENT Albany, New York 12230 V A ThL U: ESTHER T. SVIERTZ LIBRARY THI-: ?‘HW YORK BOTANICAL GARDEN THE LuESTHER T. MERTZ LIBRARY THE NEW YORK BOTANICAL GARDEN Pinophyta (Gymnosperms) of New York State Edward A. Cope The L. H. Bailey Hortorium Cornell University Contributions to a Flora of New York State IX Richard S. Mitchell, Editor 1992 Bulletin No. 483 New York State Museum The University of the State of New York THE STATE EDUC ATION DEPARTMENT Albany, New York 12230 THE UNIVERSITY OF THE STATE OF NEW YORK Regents of The University Martin C. Barell, Chancellor, B.A., I.A., LL.B. Muttontown R. Carlos Carballada, Vice Chancellor, B.S. Rochester Willard A. Genrich, LL.B. Buffalo Emlyn I. Griffith. A.B.. J.D. Rome Jorge L. Batista, B.A.. J.D. Bronx Laura Bradley Chodos, B.A., M.A. Vischer Ferry Louise P. Matteoni, B.A., M.A., Ph.D. Bayside J. Edward Meyer, B.A., LL.B. Chappaqua FloydS. Linton, A.B., M.A., M.P.A. Miller Place Mimi Levin Lif.ber, B.A., M.A. Manhattan Shirley C. Brown, B.A., M.A., Ph.D. Albany Norma Gluck, B.A., M.S.W. Manhattan Adelaide L. Sanford, B.A., M.A., P.D. -
Biological Species Concepts in Eastern North American Populations of Lentinellus Ursinus Andrew N
Eastern Illinois University The Keep Masters Theses Student Theses & Publications 1997 Biological Species Concepts in Eastern North American Populations of Lentinellus ursinus Andrew N. Miller Eastern Illinois University This research is a product of the graduate program in Botany at Eastern Illinois University. Find out more about the program. Recommended Citation Miller, Andrew N., "Biological Species Concepts in Eastern North American Populations of Lentinellus ursinus" (1997). Masters Theses. 1784. https://thekeep.eiu.edu/theses/1784 This is brought to you for free and open access by the Student Theses & Publications at The Keep. It has been accepted for inclusion in Masters Theses by an authorized administrator of The Keep. For more information, please contact [email protected]. THESIS REPRODUCTION CERTIFICATE TO: Graduate Degree Candidates {who have written formal theses) SUBJECT: Permission to Reproduce Theses The University Library is receiving a number of requests from other institutions asking permission to reproduce dissertations for inclusion in their library holdings. Although no copyright laws are involved, we feel that professional courtesy demands that permission be obtained from the author before we allow theses to be copied. PLEASE SIGN ONE OF THE FOLLOWING STATEMENTS: Booth Library of Eastern Illinois University has my permission to lend my thesis to a reputable college or university for the purpose of copying it for inclusion in that institution's library or research holdings. Andrew N. Miller u~l.ff~ Author Date 7 I respectfully request Booth Library of Eastern Illinois University not allow my thesis to be reproduced because: Author Date Biological species concepts in eastern North American populations of Lentinellus ursinus (TITLE) BY Andrew N. -
Fungi of North East Victoria Online
Agarics Agarics Agarics Agarics Fungi of North East Victoria An Identication and Conservation Guide North East Victoria encompasses an area of almost 20,000 km2, bounded by the Murray River to the north and east, the Great Dividing Range to the south and Fungi the Warby Ranges to the west. From box ironbark woodlands and heathy dry forests, open plains and wetlands, alpine herb elds, montane grasslands and of North East Victoria tall ash forests, to your local park or backyard, fungi are found throughout the region. Every fungus species contributes to the functioning, health and An Identification and Conservation Guide resilience of these ecosystems. Identifying Fungi This guide represents 96 species from hundreds, possibly thousands that grow in the diverse habitats of North East Victoria. It includes some of the more conspicuous and distinctive species that can be recognised in the eld, using features visible to the Agaricus xanthodermus* Armillaria luteobubalina* Coprinellus disseminatus Cortinarius austroalbidus Cortinarius sublargus Galerina patagonica gp* Hypholoma fasciculare Lepista nuda* Mycena albidofusca Mycena nargan* Protostropharia semiglobata Russula clelandii gp. yellow stainer Australian honey fungus fairy bonnet Australian white webcap funeral bell sulphur tuft blewit* white-crowned mycena Nargan’s bonnet dung roundhead naked eye or with a x10 magnier. LAMELLAE M LAMELLAE M ■ LAMELLAE S ■ LAMELLAE S, P ■ LAMELLAE S ■ LAMELLAE M ■ ■ LAMELLAE S ■ LAMELLAE S ■ LAMELLAE S ■ LAMELLAE S ■ LAMELLAE S ■ LAMELLAE S ■ When identifying a fungus, try and nd specimens of the same species at dierent growth stages, so you can observe the developmental changes that can occur. Also note the variation in colour and shape that can result from exposure to varying weather conditions. -
The Ascomycota
Papers and Proceedings of the Royal Society of Tasmania, Volume 139, 2005 49 A PRELIMINARY CENSUS OF THE MACROFUNGI OF MT WELLINGTON, TASMANIA – THE ASCOMYCOTA by Genevieve M. Gates and David A. Ratkowsky (with one appendix) Gates, G. M. & Ratkowsky, D. A. 2005 (16:xii): A preliminary census of the macrofungi of Mt Wellington, Tasmania – the Ascomycota. Papers and Proceedings of the Royal Society of Tasmania 139: 49–52. ISSN 0080-4703. School of Plant Science, University of Tasmania, Private Bag 55, Hobart, Tasmania 7001, Australia (GMG*); School of Agricultural Science, University of Tasmania, Private Bag 54, Hobart, Tasmania 7001, Australia (DAR). *Author for correspondence. This work continues the process of documenting the macrofungi of Mt Wellington. Two earlier publications were concerned with the gilled and non-gilled Basidiomycota, respectively, excluding the sequestrate species. The present work deals with the non-sequestrate Ascomycota, of which 42 species were found on Mt Wellington. Key Words: Macrofungi, Mt Wellington (Tasmania), Ascomycota, cup fungi, disc fungi. INTRODUCTION For the purposes of this survey, all Ascomycota having a conspicuous fruiting body were considered, excluding Two earlier papers in the preliminary documentation of the endophytes. Material collected during forays was described macrofungi of Mt Wellington, Tasmania, were confined macroscopically shortly after collection, and examined to the ‘agarics’ (gilled fungi) and the non-gilled species, microscopically to obtain details such as the size of the -
A Phylogenetic Overview of the Antrodia Clade (Basidiomycota, Polyporales)
Mycologia, 105(6), 2013, pp. 1391–1411. DOI: 10.3852/13-051 # 2013 by The Mycological Society of America, Lawrence, KS 66044-8897 A phylogenetic overview of the antrodia clade (Basidiomycota, Polyporales) Beatriz Ortiz-Santana1 phylogenetic studies also have recognized the genera Daniel L. Lindner Amylocystis, Dacryobolus, Melanoporia, Pycnoporellus, US Forest Service, Northern Research Station, Center for Sarcoporia and Wolfiporia as part of the antrodia clade Forest Mycology Research, One Gifford Pinchot Drive, (SY Kim and Jung 2000, 2001; Binder and Hibbett Madison, Wisconsin 53726 2002; Hibbett and Binder 2002; SY Kim et al. 2003; Otto Miettinen Binder et al. 2005), while the genera Antrodia, Botanical Museum, University of Helsinki, PO Box 7, Daedalea, Fomitopsis, Laetiporus and Sparassis have 00014, Helsinki, Finland received attention in regard to species delimitation (SY Kim et al. 2001, 2003; KM Kim et al. 2005, 2007; Alfredo Justo Desjardin et al. 2004; Wang et al. 2004; Wu et al. 2004; David S. Hibbett Dai et al. 2006; Blanco-Dios et al. 2006; Chiu 2007; Clark University, Biology Department, 950 Main Street, Worcester, Massachusetts 01610 Lindner and Banik 2008; Yu et al. 2010; Banik et al. 2010, 2012; Garcia-Sandoval et al. 2011; Lindner et al. 2011; Rajchenberg et al. 2011; Zhou and Wei 2012; Abstract: Phylogenetic relationships among mem- Bernicchia et al. 2012; Spirin et al. 2012, 2013). These bers of the antrodia clade were investigated with studies also established that some of the genera are molecular data from two nuclear ribosomal DNA not monophyletic and several modifications have regions, LSU and ITS. A total of 123 species been proposed: the segregation of Antrodia s.l. -
Ascocarp Development in Anthracobia Melaloma
AN ABSTRACT OF THE THESIS OF HAROLD JULIUS LARSEN, JR. for the MASTER OF ARTS (Name) (Degree) in BOTANY presented on it (Major) (Date) Title: ASCOCA.RP DEVELOPMENT IN ANTHRACOBIA MELALOMA. Abstract approved:Redacted for privacy William C. Denison Cultural and developmental characteristics of a collection of Anthracobia melaloma with a brown hymeniurn and a barred exterior appearance were examined.It grows well in culture on CM and CMMY agar media and has a growth rate of 17 mm in 18 hours.It is heterothallic and produces asexual rnultinucleate arthrospores after incubation at 300C or above for several days in succession.These arthrospores germinate readily after transfer to fresh media. Antheridial hyphae and archicarps are produced by both mating types although the negative mating type isolates producemore abun- dant archicarps.Antheridia are indistinguishable from vegetative hyphae until just prior to plasmogamy when they become swollen. Septal pads arise on the septa separating the cells of the trichogyne and ascogonium subsequent to plasmogamy and persist throughout development. The paraphyses, the ectal and medullary excipulum, and the excipular hairs are all derived from the sheathing hyphae. Ascogenous hyphae and asci are derived from the largest cells of the ascogonium. A haploid chromosome number of four is confirmed for the species. Exposure to fluorescent light was unnecessary for apothecial induction, but did enhance apothecial maturation and the production of hyrnenial carotenoid pigments.Constant exposure to light inhibited