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Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School November 2017 Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E. Hepner University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, Ecology and Evolutionary Biology Commons, and the Other Oceanography and Atmospheric Sciences and Meteorology Commons Scholar Commons Citation Hepner, Megan E., "Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary" (2017). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/7408 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary by Megan E. Hepner A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science Marine Science with a concentration in Marine Resource Assessment College of Marine Science University of South Florida Major Professor: Frank Muller-Karger, Ph.D. Christopher Stallings, Ph.D. Steve Gittings, Ph.D. Date of Approval: October 31st, 2017 Keywords: Species richness, biodiversity, functional diversity, species traits Copyright © 2017, Megan E. Hepner ACKNOWLEDGMENTS I am indebted to my major advisor, Dr. Frank Muller-Karger, who provided opportunities for me to strengthen my skills as a researcher on research cruises, dive surveys, and in the laboratory, and as a communicator through oral and presentations at conferences, and for encouraging my participation as a full team member in various meetings of the Marine Biodiversity Observation Network (MBON) and other science meetings. -
A Practical Handbook for Determining the Ages of Gulf of Mexico And
A Practical Handbook for Determining the Ages of Gulf of Mexico and Atlantic Coast Fishes THIRD EDITION GSMFC No. 300 NOVEMBER 2020 i Gulf States Marine Fisheries Commission Commissioners and Proxies ALABAMA Senator R.L. “Bret” Allain, II Chris Blankenship, Commissioner State Senator District 21 Alabama Department of Conservation Franklin, Louisiana and Natural Resources John Roussel Montgomery, Alabama Zachary, Louisiana Representative Chris Pringle Mobile, Alabama MISSISSIPPI Chris Nelson Joe Spraggins, Executive Director Bon Secour Fisheries, Inc. Mississippi Department of Marine Bon Secour, Alabama Resources Biloxi, Mississippi FLORIDA Read Hendon Eric Sutton, Executive Director USM/Gulf Coast Research Laboratory Florida Fish and Wildlife Ocean Springs, Mississippi Conservation Commission Tallahassee, Florida TEXAS Representative Jay Trumbull Carter Smith, Executive Director Tallahassee, Florida Texas Parks and Wildlife Department Austin, Texas LOUISIANA Doug Boyd Jack Montoucet, Secretary Boerne, Texas Louisiana Department of Wildlife and Fisheries Baton Rouge, Louisiana GSMFC Staff ASMFC Staff Mr. David M. Donaldson Mr. Bob Beal Executive Director Executive Director Mr. Steven J. VanderKooy Mr. Jeffrey Kipp IJF Program Coordinator Stock Assessment Scientist Ms. Debora McIntyre Dr. Kristen Anstead IJF Staff Assistant Fisheries Scientist ii A Practical Handbook for Determining the Ages of Gulf of Mexico and Atlantic Coast Fishes Third Edition Edited by Steve VanderKooy Jessica Carroll Scott Elzey Jessica Gilmore Jeffrey Kipp Gulf States Marine Fisheries Commission 2404 Government St Ocean Springs, MS 39564 and Atlantic States Marine Fisheries Commission 1050 N. Highland Street Suite 200 A-N Arlington, VA 22201 Publication Number 300 November 2020 A publication of the Gulf States Marine Fisheries Commission pursuant to National Oceanic and Atmospheric Administration Award Number NA15NMF4070076 and NA15NMF4720399. -
An Invitation to Monitor Georgia's Coastal Wetlands
An Invitation to Monitor Georgia’s Coastal Wetlands www.shellfish.uga.edu By Mary Sweeney-Reeves, Dr. Alan Power, & Ellie Covington First Printing 2003, Second Printing 2006, Copyright University of Georgia “This book was prepared by Mary Sweeney-Reeves, Dr. Alan Power, and Ellie Covington under an award from the Office of Ocean and Coastal Resource Management, National Oceanic and Atmospheric Administration. The statements, findings, conclusions, and recommendations are those of the authors and do not necessarily reflect the views of OCRM and NOAA.” 2 Acknowledgements Funding for the development of the Coastal Georgia Adopt-A-Wetland Program was provided by a NOAA Coastal Incentive Grant, awarded under the Georgia Department of Natural Resources Coastal Zone Management Program (UGA Grant # 27 31 RE 337130). The Coastal Georgia Adopt-A-Wetland Program owes much of its success to the support, experience, and contributions of the following individuals: Dr. Randal Walker, Marie Scoggins, Dodie Thompson, Edith Schmidt, John Crawford, Dr. Mare Timmons, Marcy Mitchell, Pete Schlein, Sue Finkle, Jenny Makosky, Natasha Wampler, Molly Russell, Rebecca Green, and Jeanette Henderson (University of Georgia Marine Extension Service); Courtney Power (Chatham County Savannah Metropolitan Planning Commission); Dr. Joe Richardson (Savannah State University); Dr. Chandra Franklin (Savannah State University); Dr. Dionne Hoskins (NOAA); Dr. Charles Belin (Armstrong Atlantic University); Dr. Merryl Alber (University of Georgia); (Dr. Mac Rawson (Georgia Sea Grant College Program); Harold Harbert, Kim Morris-Zarneke, and Michele Droszcz (Georgia Adopt-A-Stream); Dorset Hurley and Aimee Gaddis (Sapelo Island National Estuarine Research Reserve); Dr. Charra Sweeney-Reeves (All About Pets); Captain Judy Helmey (Miss Judy Charters); Jan Mackinnon and Jill Huntington (Georgia Department of Natural Resources). -
Influence of Oceanographic Conditions on Abundance and Distribution of Post-Larval and Juvenile Carangid Fishes in the Northern Gulf of Mexico
Received: 19 August 2016 | Accepted: 26 January 2017 DOI: 10.1111/fog.12214 ORIGINAL ARTICLE Influence of oceanographic conditions on abundance and distribution of post-larval and juvenile carangid fishes in the northern Gulf of Mexico John A. Mohan1 | Tracey T. Sutton2 | April B. Cook2 | Kevin M. Boswell3 | R. J. David Wells1,4 1Department of Marine Biology, Texas A&M University at Galveston, Galveston, Abstract TX, USA Relationships between abundance of post-larval and juvenile carangid (jacks) fishes 2Department of Marine and Environmental and physical oceanographic conditions were examined in the northern Gulf of Mex- Sciences, Nova Southeastern University, Dania Beach, FL, USA ico (GoM) in 2011 with high freshwater input from the Mississippi River. General- 3Department of Biological Sciences, Florida ized additive models (GAMs) were used to explore complex relationships between International University, North Miami, FL, USA carangid abundance and physical oceanographic data of sea surface temperature 4Department of Wildlife and Fisheries (SST), sea surface height anomaly (SSHA) and salinity. The five most abundant car- Sciences, Texas A&M University, College angid species collected were: Selene setapinnis (34%); Caranx crysos (30%); Caranx Station, TX, USA hippos (10%); Chloroscombrus chrysurus (9%) and Trachurus lathami (8%). Post-larval Correspondence carangids (median standard length [SL] = 10 mm) were less abundant during the John A. Mohan Email: [email protected] spring and early summer, but more abundant during the late summer and fall, sug- gesting summer to fall spawning for most species. Juvenile carangid (median Funding information Gulf of Mexico Research Initiative; National SL = 23 mm) abundance also increased between the mid-summer and early fall. -
Integration Drives Rapid Phenotypic Evolution in Flatfishes
Integration drives rapid phenotypic evolution in flatfishes Kory M. Evansa,1, Olivier Larouchea, Sara-Jane Watsonb, Stacy Farinac, María Laura Habeggerd, and Matt Friedmane,f aDepartment of Biosciences, Rice University, Houston, TX 77005; bDepartment of Biology, New Mexico Institute of Mining and Technology, Socorro, NM 87801; cDepartment of Biology, Howard University, Washington, DC 20059; dDepartment of Biology, University of North Florida, Jacksonville, FL 32224; eDepartment of Paleontology, University of Michigan, Ann Arbor, MI 48109; and fDepartment of Earth and Environmental Sciences, University of Michigan, Ann Arbor, MI 48109 Edited by Neil H. Shubin, University of Chicago, Chicago, IL, and approved March 19, 2021 (received for review January 21, 2021) Evolutionary innovations are scattered throughout the tree of life, organisms and is thought to facilitate morphological diversifica- and have allowed the organisms that possess them to occupy tion as different traits are able to fine-tune responses to different novel adaptive zones. While the impacts of these innovations are selective pressures (27–29). Conversely, integration refers to a well documented, much less is known about how these innova- pattern whereby different traits exhibit a high degree of covaria- tions arise in the first place. Patterns of covariation among traits tion (21, 30). Patterns of integration may be the result of pleiot- across macroevolutionary time can offer insights into the gener- ropy or functional coupling (28, 30–33). There is less of a ation of innovation. However, to date, there is no consensus on consensus on the macroevolutionary implications of phenotypic the role that trait covariation plays in this process. The evolution integration. -
Fish and Shellfish of the South Atlantic and Gulf Coasts
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln US Fish & Wildlife Publications US Fish & Wildlife Service 10-1944 Fish and Shellfish of the South tlanticA and Gulf Coasts Rachel L. Carson US Department of the Interior Follow this and additional works at: https://digitalcommons.unl.edu/usfwspubs Part of the Aquaculture and Fisheries Commons, and the Biodiversity Commons Carson, Rachel L., "Fish and Shellfish of the South tlanticA and Gulf Coasts" (1944). US Fish & Wildlife Publications. 19. https://digitalcommons.unl.edu/usfwspubs/19 This Article is brought to you for free and open access by the US Fish & Wildlife Service at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in US Fish & Wildlife Publications by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. UNITED STATES DEPARTMENT OF THE INTERIOR Harold L. Ickes, Secretary OFFICE OF THE COORDINATOR OF FISHERIES Ira N. Gabrielson, Deputy Coordinator UNITED STATES GOVERNMENT PRINTING OFFICE - WASHINGTON - 1944 For sale by the Superintendent of Documents, Washington 25, D. C. - Price 10 cents CONTENTS Introduction ........................................................... The fisheries.......................................................... The fishing grounds- ................................................. The South Atlantic coast. ...................................... The Gulf coast .................................................... Boats, men, and fishing gear ........................................... -
Fishes of the Indian River Lagoon and Adjacent Waters, Florida
FISHES OF THE INDIAN RIVER LAGOON AND ADJACENT WATERS, FLORIDA by R. Grant Gilmore, Jr. Christopher J. Donohoe Douglas W. Cooke Harbor Branch Foundation, Inc. RR 1, Box 196 Fort Pierce, Florida 33450 and David J. Herrema Applied Biology, Inc. 641 DeKalb Industrial Way Decatur, Georgia 30033 Harbor Branch Foundation, Inc. Technical Report No. 41 September 1981 Funding was provided by the Harbor Branch Foundation, Inc. and Florida Power & Light Company, Miami, Florida FISHES OF THE INDIAN RIVER LAGOON AND ADJACENT WATERS, FLORIDA R. Grant Gilmore, Jr. Christopher Donohoe Dougl as Cooke Davi d Herrema INTRODUCTION It is the intent of this presentation to briefly describe regional fish habitats and to list the fishes associated with these habitats in the Indian River lagoon, its freshwater tributaries and the adjacent continental shelf to a depth of 200 m. A brief historical review of other regional ichthyological studies is also given. Data presented here revises the first regional description and checklist of fishes in east central Florida (Gilmore, 1977). The Indian River is a narrow estuarine lagoon system extending from Ponce de Leon Inlet in Vol usia County south to Jupiter Inlet in Palm Beach County (Fig. 1). It lies within the zone of overlap between two well known faunal regimes (i.e. the warm temperate Carolinian and the tropical Caribbean). To the north of the region, Hildebrand and Schroeder (1928), Fowler (1945), Struhsaker (1969), Dahlberg (1971), and others have made major icthyofaunal reviews of the coastal waters of the southeastern United States. McLane (1955) and Tagatz (1967) have made extensive surveys of the fishes of the St. -
Copyrighted Material
Trim Size: 6.125in x 9.25ink Nelson bindex.tex V2 - 03/02/2016 12:09 A.M. Page 651 Index k Aaptosyax, 183 Acanthocleithron, 227 acanthopterygian, 280 k Abactochromis, 344 Acanthoclininae, 336 Acanthopterygii, 264, 265, Abadzekhia, 415 Acanthoclinus, 336, 337 279, 280, 284, 286, Abalistes, 523 Acanthocobitis, 192 302, 303, 353 abas, 160 Acanthocybium, 417 Acanthorhina,51 Abisaadia, 139 Acanthodes, 97, 100, 101 Acanthoscyllium,62 Abisaadichthys, 132 acanthodians, 43, 44, 96 Acanthosphex, 473 Ablabys, 471 ACANTHODIDAE, 101 Acanthostega, 111 Ablennes, 368 ACANTHODIFORMES, 97, Acanthostracion, 522 Aboma, 332 100 ACANTHOTHORACI- Aborichthys, 192 Acanthodii, 36, 40, 95, FORMES, 37 Abramis, 184 96, 98 Acanthuridae, 499, 500, 501 Abramites, 200 Acanthodopsis, 101 ACANTHURIFORMES, 420, Abudefduf, 339 Acanthodoras, 234 430, 452, 495, 497 Abyssoberyx, 310 Acanthodraco, 466 Acanthurinae, 502 Abyssobrotula, 318 Acanthogobius, 330 Acanthurini, 502 Abyssocottinae, 485, 492 Acantholabrus, 428 Acanthuroidei, 453, 462, Abyssocottus, 492 Acantholingua, 247 COPYRIGHTED MATERIAL496, 497, 498, 499 Acanthanectes, 347 Acantholiparis, 495 Acanthaphritis, 425 Acantholumpenus, 480 Acanthurus, 502 Acantharchus, 444, Acanthomorpha, 276, 278, Acantopsis, 190 445, 446 279, 280, 307 Acarobythites, 319 Acanthemblemaria, 351 acanthomorphs, 278 Acaronia, 344 Acanthistius, 446, 447 Acanthonus, 318 Acentrogobius, 332 Acanthobrama, 184 Acanthopagrus, 506 Acentronichthys, 236 Acanthobunocephalus, 233 Acanthophthalmus, 190 Acentronura, 408 Acanthocepola, 461 Acanthoplesiops, -
Unexpected Diversity in the Diet of Doryteuthis Sanpaulensis
Fisheries Research 239 (2021) 105936 Contents lists available at ScienceDirect Fisheries Research journal homepage: www.elsevier.com/locate/®shres Unexpected diversity in the diet of Doryteuthis sanpaulensis (Brakoniecki, 1984) (Mollusca: Cephalopoda) from the southern Brazilian sardine fishery identified by metabarcoding Talita Fernanda Augusto Ribas a,b, Joao~ Braullio´ de Luna Sales a, Hugo de Boer b, Jarl Andreas Anmarkrud b, Renato Renison Moreira Oliveira c,d, Marcele Laux b,d, Fabricio dos Anjos Santa Rosa b, Guilherme Corr^ea Oliveira c, Felippe A. Postuma e, Maria A. Gasalla e, Jonathan Stuart Ready a,* a Universidade Federal do Para,´ Grupo de Investigaçao~ Biologica´ Integrada, Centro de Estudos Avançados da Biodiversidade, Av. Perimetral 01, PCT-Guama,´ Terreno 11, CEP: 66075-110, Bel´em, PA, Brazil b Natural History Museum, University of Oslo, P.O. Box 1172, Blindern, 0318 Oslo, Norway c Grupo de Genomica^ Ambiental, Instituto Tecnologico´ Vale, Bel´em, Para,´ Brazil d Programa de Pos-graduaç´ ao~ em Bioinformatica,´ Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil e Fisheries Ecosystems Laboratory, Oceanographic Institute, University of Sao~ Paulo, Sao~ Paulo, Brazil ARTICLE INFO ABSTRACT Handled by J Vinas~ Growing fishing pressure worldwide has led to an increase in the exploitation of cephalopod products in fish markets where these taxa were not traditionally consumed. Squid catches have surged to meet that demand, yet Keywords: for many species little is known about their role in food webs. Doryteuthis sanpaulensis is an important squid Molecular identification species in southeastern Brazilian fisheries.Despite many previous efforts at morphological analysis of its diet, few Sao Paulo squid demersal and benthic species of fishes,crustaceans and mollusks have been identifiedto species level because the Subtropical Atlantic food is consumed in small digestible fragments. -
Supporting Information
Supporting Information Near et al. 10.1073/pnas.1304661110 SI Text and SD of 0.8 to set 57.0 Ma as the minimal age offset and 65.3 Ma as the 95% soft upper bound. Fossil Calibration Age Priors † Here we provide, for each fossil calibration prior, the identity of Calibration 7. Trichophanes foliarum, calibration 13 in Near et al. the calibrated node in the teleost phylogeny, the taxa that rep- (1). Prior setting: a lognormal prior with the mean of 1.899 and resent the first occurrence of the lineage in the fossil record, SD of 0.8 to set 34.1 Ma as the minimal age offset and 59.0 Ma as a description of the character states that justify the phylogenetic the 95% soft upper bound. placement of the fossil taxon, information on the stratigraphy of Calibration 8. †Turkmene finitimus, calibration 16 in Near et al. the rock formations bearing the fossil, and the absolute age es- (1). Prior setting: a lognormal prior with the mean of 2.006 and timate for the fossil; outline the prior age setting used in the SD of 0.8 to set 55.8 Ma as the minimal age offset and 83.5 Ma as BEAST relaxed clock analysis; and provide any additional notes the 95% soft upper bound. on the calibration. Less detailed information is provided for 26 of the calibrations used in a previous study of actinopterygian di- Calibration 9. †Cretazeus rinaldii, calibration 14 in Near et al. (1). vergence times, as all the information and prior settings for these Prior setting: a lognormal prior with the mean of 1.016 and SD of calibrations is found in the work of Near et al. -
Isopods (Isopoda: Aegidae, Cymothoidae, Gnathiidae) Associated with Venezuelan Marine Fishes (Elasmobranchii, Actinopterygii)
Isopods (Isopoda: Aegidae, Cymothoidae, Gnathiidae) associated with Venezuelan marine fishes (Elasmobranchii, Actinopterygii) Lucy Bunkley-Williams,1 Ernest H. Williams, Jr.2 & Abul K.M. Bashirullah3 1 Caribbean Aquatic Animal Health Project, Department of Biology, University of Puerto Rico, P.O. Box 9012, Mayagüez, PR 00861, USA; [email protected] 2 Department of Marine Sciences, University of Puerto Rico, P.O. Box 908, Lajas, Puerto Rico 00667, USA; ewil- [email protected] 3 Instituto Oceanografico de Venezuela, Universidad de Oriente, Cumaná, Venezuela. Author for Correspondence: LBW, address as above. Telephone: 1 (787) 832-4040 x 3900 or 265-3837 (Administrative Office), x 3936, 3937 (Research Labs), x 3929 (Office); Fax: 1-787-834-3673; [email protected] Received 01-VI-2006. Corrected 02-X-2006. Accepted 13-X-2006. Abstract: The parasitic isopod fauna of fishes in the southern Caribbean is poorly known. In examinations of 12 639 specimens of 187 species of Venezuelan fishes, the authors found 10 species in three families of isopods (Gnathiids, Gnathia spp. from Diplectrum radiale*, Heteropriacanthus cruentatus*, Orthopristis ruber* and Trachinotus carolinus*; two aegids, Rocinela signata from Dasyatis guttata*, H. cruentatus*, Haemulon auro- lineatum*, H. steindachneri* and O. ruber; and Rocinela sp. from Epinephelus flavolimbatus*; five cymothoids: Anilocra haemuli from Haemulon boschmae*, H. flavolineatum* and H. steindachneri*; Anilocra cf haemuli from Heteropriacanthus cruentatus*; Haemulon bonariense*, O. ruber*, Cymothoa excisa in H. cruentatus*; Cymothoa oestrum in Chloroscombrus chrysurus, H. cruentatus* and Priacanthus arenatus; Cymothoa sp. in O. ruber; Livoneca sp. from H. cruentatus*; and Nerocila fluviatilis from H. cruentatus* and P. arenatus*). The Rocinela sp. and A. -
EN615 Cruise Report
ADEON Recovery/Deployment Cruise Report #EN615 - RV Endeavor 06 – 25 June 2018 San Juan, Puerto Rico to Narragansett, RI Chief Scientist Joseph Warren, Jennifer Miksis-Olds, Carmen Lawrence, Brandyn Lucca, Hannah Blair, Sebastian Velez, Cassandra Fries, Peter Larios, Madison Alstede, Stephen Ell, 1 Jennifer Conyers, Andrew Heaney, Lindsay Olson, and Katharine Coykendall Cruise Summary The objectives for this cruise were to recover bottom landers at seven sites (Figure 1) along the shelfbreak (depths ranging from 200 – 900 m roughly), redeploy a bottom lander at each site after downloading its data, collect CTD profiles to characterize hydrographic conditions at the sites, conduct net sampling to collect biological specimens at each site, and conduct fine-scale (roughly 8 km by 8 km) multi-frequency acoustic surveys at each site (Figure 2). All cruise objectives were completed safely. In addition, we collected animal specimens from net tows for collaborators associated with the DEEP SEARCH project as well as collecting water samples for eDNA analysis for DEEP SEARCH and other collaborators. Water samples were also collected by a UNH undergraduate in support of her capstone paper. We were fortunate to have good weather for much of the cruise which allowed us to complete additional net tows, CTD, and fine-scale acoustic surveys at some sites (Table 1). We appreciate the excellent work of the ship’s Captain and crew (in all aspects on the boat) in helping us to accomplish our cruise objectives. Table 1. Summary of sampling that occurred at each site location during the EN615 research cruise. We were able to accomplish additional sampling at the VAC and HAT sites.