Atoll Research Bulletin No. 550 Community Structure Of
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Supplementary Material
Supplementary Material SM1. Post-Processing of Images for Automated Classification Imagery was collected without artificial light and using a fisheye lens to maximise light capture, therefore each image needed to be processed prior annotation in order to balance colour and to minimise the non-linear distortion introduced by the fisheye lens (Figure S1). Initially, colour balance and lenses distortion correction were manually applied on the raw images using Photoshop (Adobe Systems, California, USA). However, in order to optimize the manual post-processing time of thousands of images, more recent images from the Indian Ocean and Pacific Ocean were post- processed using compressed images (jpeg format) and an automatic batch processing in Photoshop and ImageMagick, the latter an open-source software for image processing (www.imagemagick.org). In view of this, the performance of the automated image annotation on images without colour balance was contrasted against images colour balanced using manual post-processing (on raw images) and the automatic batch processing (on jpeg images). For this evaluation, the error metric described in the main text (Materials and Methods) was applied to the images from following regions: the Maldives and the Great Barrier Reef (Figures S2 and S3). We found that the colour balance applied regardless the type of processing (manual vs automatic) had an important beneficial effect on the performance of the automated image annotation as errors were reduced for critical labels in both regions (e.g., Algae labels; Figures S2 and S3). Importantly, no major differences in the performance of the automated annotations were observed between manual and automated adjustments for colour balance. -
Checklist of Fish and Invertebrates Listed in the CITES Appendices
JOINTS NATURE \=^ CONSERVATION COMMITTEE Checklist of fish and mvertebrates Usted in the CITES appendices JNCC REPORT (SSN0963-«OStl JOINT NATURE CONSERVATION COMMITTEE Report distribution Report Number: No. 238 Contract Number/JNCC project number: F7 1-12-332 Date received: 9 June 1995 Report tide: Checklist of fish and invertebrates listed in the CITES appendices Contract tide: Revised Checklists of CITES species database Contractor: World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge, CB3 ODL Comments: A further fish and invertebrate edition in the Checklist series begun by NCC in 1979, revised and brought up to date with current CITES listings Restrictions: Distribution: JNCC report collection 2 copies Nature Conservancy Council for England, HQ, Library 1 copy Scottish Natural Heritage, HQ, Library 1 copy Countryside Council for Wales, HQ, Library 1 copy A T Smail, Copyright Libraries Agent, 100 Euston Road, London, NWl 2HQ 5 copies British Library, Legal Deposit Office, Boston Spa, Wetherby, West Yorkshire, LS23 7BQ 1 copy Chadwick-Healey Ltd, Cambridge Place, Cambridge, CB2 INR 1 copy BIOSIS UK, Garforth House, 54 Michlegate, York, YOl ILF 1 copy CITES Management and Scientific Authorities of EC Member States total 30 copies CITES Authorities, UK Dependencies total 13 copies CITES Secretariat 5 copies CITES Animals Committee chairman 1 copy European Commission DG Xl/D/2 1 copy World Conservation Monitoring Centre 20 copies TRAFFIC International 5 copies Animal Quarantine Station, Heathrow 1 copy Department of the Environment (GWD) 5 copies Foreign & Commonwealth Office (ESED) 1 copy HM Customs & Excise 3 copies M Bradley Taylor (ACPO) 1 copy ^\(\\ Joint Nature Conservation Committee Report No. -
Hawai'i Institute of Marine Biology Northwestern Hawaiian Islands
Hawai‘i Institute of Marine Biology Northwestern Hawaiian Islands Coral Reef Research Partnership Quarterly Progress Reports II-III August, 2005-March, 2006 Report submitted by Malia Rivera and Jo-Ann Leong April 21, 2006 Photo credits: Front cover and back cover-reef at French Frigate Shoals. Upper left, reef at Pearl and Hermes. Photos by James Watt. Hawai‘i Institute of Marine Biology Northwestern Hawaiian Islands Coral Reef Research Partnership Quarterly Progress Reports II-III August, 2005-March, 2006 Report submitted by Malia Rivera and Jo-Ann Leong April 21, 2006 Acknowledgments. Hawaii Institute of Marine Biology (HIMB) acknowledges the support of Senator Daniel K. Inouye’s Office, the National Marine Sanctuary Program (NMSP), the Northwestern Hawaiian Islands Coral Reef Ecosystem Reserve (NWHICRER), State of Hawaii Department of Land and Natural Resources (DLNR) Division of Aquatic Resources, US Fish and Wildlife Service, NOAA Fisheries, and the numerous University of Hawaii partners involved in this project. Funding provided by NMSP MOA 2005-008/66832. Photos provided by NOAA NWHICRER and HIMB. Aerial photo of Moku o Lo‘e (Coconut Island) by Brent Daniel. Background The Hawai‘i Institute of Marine Biology (School of Ocean and Earth Science and Technology, University of Hawai‘i at Mānoa) signed a memorandum of agreement with National Marine Sanctuary Program (NOS, NOAA) on March 28, 2005, to assist the Northwestern Hawaiian Islands Coral Reef Ecosystem Reserve (NWHICRER) with scientific research required for the development of a science-based ecosystem management plan. With this overriding objective, a scope of work was developed to: 1. Understand the population structures of bottomfish, lobsters, reef fish, endemic coral species, and adult predator species in the NWHI. -
Genetic Structure Is Stronger Across Human-Impacted Habitats Than Among Islands in the Coral Porites Lobata
Genetic structure is stronger across human-impacted habitats than among islands in the coral Porites lobata Kaho H. Tisthammer1,2, Zac H. Forsman3, Robert J. Toonen3 and Robert H. Richmond1 1 Kewalo Marine Laboratory, University of Hawaii at Manoa, Honolulu, HI, United States of America 2 Department of Biology, San Francisco State University, San Francisco, CA, United States of America 3 Hawaii Institute of Marine Biology, University of Hawaii at Manoa, Kaneohe, HI, United States of America ABSTRACT We examined genetic structure in the lobe coral Porites lobata among pairs of highly variable and high-stress nearshore sites and adjacent less variable and less impacted offshore sites on the islands of O‘ahu and Maui, Hawai‘i. Using an analysis of molecular variance framework, we tested whether populations were more structured by geographic distance or environmental extremes. The genetic patterns we observed followed isolation by environment, where nearshore and adjacent offshore populations showed significant genetic structure at both locations (AMOVA FST D 0.04∼0.19, P < 0:001), but no significant isolation by distance between islands. Strikingly, corals from the two nearshore sites with higher levels of environmental stressors on different islands over 100 km apart with similar environmentally stressful conditions were genetically closer (FST D 0.0, P D 0.73) than those within a single location less than 2 km apart (FST D 0.04∼0.08, P < 0:01). In contrast, a third site with a less impacted nearshore site (i.e., less pronounced environmental gradient) showed no significant structure from the offshore comparison. Our results show much stronger support for environment than distance separating these populations. -
Bleaching and Recovery of Five Eastern Pacific Corals in an El Niño-Related Temperature Experiment
BULLETIN OF MARINE SCIENCE, 69(1): 215–236, 2001 BLEACHING AND RECOVERY OF FIVE EASTERN PACIFIC CORALS IN AN EL NIÑO-RELATED TEMPERATURE EXPERIMENT Christiane Hueerkamp, Peter W. Glynn, Luis D’Croz, Juan L. Maté and Susan B. Colley ABSTRACT Coral bleaching events have increased in frequency and severity, due mainly to el- evated water temperature associated with El Niño-related warming and a general global warming trend. We experimentally tested the effects of El Niño-like sea temperature conditions on five reef-building corals in the Gulf of Panama. Branching species (Pocillopora damicornis and Pocillopora elegans) and massive species (Porites lobata, Pavona clavus and Pavona gigantea) were exposed to experimentally elevated seawater temperature, ~1–2∞C above ambient. Differences in zooxanthellate coral responses to bleaching and ability to recover were compared and quantified. All corals exposed to high temperature treatment exhibited significant declines in zooxanthellae densities and chlorophyll a concentrations. Pocilloporid species were the most sensitive, being the first to bleach, and suffered the highest mortality (50% after 50 d exposure). Massive coral species demonstrated varying tolerances, but were generally less affected. P. gigantea exhibited the greatest resistance to bleaching, with no lethal effects observed. Maximum experimental recovery was observed in P. lobata. No signs of recovery occurred in P. clavus, as zooxanthellae densities and chlorophyll a concentrations continued to decline under ambient (control) conditions. Experimental coral responses from populations in an upwelling environment are contrasted with field responses observed in a nonupwelling area during the 1997–98 El Niño–Southern Oscillation event. A variety of stressors can lead to coral bleaching, the whitening of coral tissue, a prob- lem that threatens reefs worldwide. -
Biological Environmental Survey in Cat Ba Island
Biodiversity International Journal Research Article Open Access Biological environmental survey in Cat Ba Island Abstract Volume 2 Issue 2 - 2018 Cat Ba Island has a significant biodiversity value as it is home to a number of rare and endangered species of plants and animals, with the world’s rarest primates the Golden- Doan Quang Tri,1,2 Tran Hong Thai2 headed Langur. According to the study results, Cat Ba place have listed 2,380 species of 1Ton Duc Thang University, Vietnam animals and plants including: terrestrial plants 741 species; living animals in the forest area 2 Vietnam Meteorological and Hydrological Administration, 282 species; mangrove plants 30 species; seaweeds 79 species; phytoplankton 287 species; Vietnam plank tonic animals 98 species; sea-fish 196 species; corals 154 species. It is identified as one of the areas of highest biodiversity importance in Vietnam and is recognized as a high Correspondence: Doan Quang Tri, Sustainable Management of priority for global conservation. Natural Resources and Environment Research Group, Faculty of Environment and Labour Safety, Ton Duc Thang University, Ho Keywords: mangrove, seagrass, coral reef, phytoplankton, cat ba island Chi Minh City, Vietnam, Email [email protected] Received: December 04, 2017 | Published: March 28, 2018 Introduction the richest marine biological system because of its diversity in the North of Vietnam.3‒7 Biosphere reserves Cat Ba Island has been recognized as a UNESCO World on December 02nd, 2004. It is the 4th world’s biosphere reserve in Vietnam. Biosphere reserves Cat Ba archipelago including great majority of Cat Ba Island in Cat Hai district, Hai Phong city, Vietnam. -
FDM 2017 Coral Species Reef Survey
Submitted in support of the U.S. Navy’s 2018 Annual Marine Species Monitoring Report for the Pacific Final ® FARALLON DE MEDINILLA 2017 SPECIES LEVEL CORAL REEF SURVEY REPORT Dr. Jessica Carilli, SSC Pacific Mr. Stephen H. Smith, SSC Pacific Mr. Donald E. Marx Jr., SSC Pacific Dr. Leslie Bolick, SSC Pacific Dr. Douglas Fenner, NOAA August 2018 Prepared for U.S. Navy Pacific Fleet Commander Pacific Fleet 250 Makalapa Drive Joint Base Pearl Harbor Hickam Hawaii 96860-3134 Space and Naval Warfare Systems Center Pacific Technical Report number 18-1079 Distribution Statement A: Unlimited Distribution 1 Submitted in support of the U.S. Navy’s 2018 Annual Marine Species Monitoring Report for the Pacific REPORT DOCUMENTATION PAGE Form Approved OMB No. 0704-0188 Public reporting burden for this collection of information is estimated to average 1 hour per response, including the time for reviewing instructions, searching data sources, gathering and maintaining the data needed, and completing and reviewing the collection of information. Send comments regarding this burden estimate or any other aspect of this collection of information, including suggestions for reducing this burden to Washington Headquarters Service, Directorate for Information Operations and Reports, 1215 Jefferson Davis Highway, Suite 1204, Arlington, VA 22202-4302, and to the Office of Management and Budget, Paperwork Reduction Project (0704-0188) Washington, DC 20503. PLEASE DO NOT RETURN YOUR FORM TO THE ABOVE ADDRESS. 1. REPORT DATE (DD-MM-YYYY) 2. REPORT TYPE 3. DATES COVERED (From - To) 08-2018 Monitoring report September 2017 - October 2017 4. TITLE AND SUBTITLE 5a. CONTRACT NUMBER FARALLON DE MEDINILLA 2017 SPECIES LEVEL CORAL REEF SURVEY REPORT 5b. -
Dominance of a Coral Community by the Genus Porites (Scleractinia)
MARINE ECOLOGY PROGRESS SERIES Vol. 23: 79-84. 1985 - Published April 25 Mar. Ecol. hog. Ser. Dominance of a coral community by the genus Porites (Scleractinia) Biology Department and Center for Marine Studies, University of California, Santa Cruz, California 95064, USA Australian Institute of Marine Science, P. M. B. No. 3, Townsville, M. C., Queensland 4810, Australia ABSTRACT: The genus Porites is a major component of many coral communities on inshore continental shelf reefs of the Great Barrier Reef. On the leeward margin of Pandora Reef, 7 species of massive Porites physically dominate the coral community. The populations of commoner species are themselves dominated, demographically and genetically by a few persistent genotypes. Five % of colonies contain 52 % of skeletal CaC03; 9 % of colonies have 50 % of living tissues. The largest colony is at least 677 yr old. Genotypic ages of tissues may be considerably greater, since colonies appear to form clones by fragmentation. INTRODUCTION level fluctuations. It is proposed that small numbers of large, old genotypes could dominate populations to Descriptions of coral reefs often mention very large such an extent that those populations would not colonies, sometimes with speculation about their ages experience sufficient numbers of generations for com- (e.g. Wells 1957, Goreau et al. 1972), but the ecologi- pletion of directional evolutionary processes during cal, evolutionary and structural implications of large the persistence of particular habitats at a given sea size and extreme longevity are rarely discussed (but level. see Highsmith 1982). Some coral communities of the The major objective of this study was examination of Great Barrier Reef contain numerous large and pre- the structure of the Porites community on Pandora Reef sumably old colonies of Porites. -
Bacterial Profiling of White Plague Disease Across Corals and Oceans
Molecular Ecology (2014) 23, 965–974 doi: 10.1111/mec.12638 Bacterial profiling of White Plague Disease across corals and oceans indicates a conserved and distinct disease microbiome CORNELIA RODER,* CHATCHANIT ARIF,* CAMILLE DANIELS,* ERNESTO WEIL† and CHRISTIAN R. VOOLSTRA* *Red Sea Research Center, King Abdullah University of Science and Technology, 23955 Thuwal, Saudi Arabia, †Department of Marine Sciences, University of Puerto Rico, PO BOX 9000, Mayaguez, Puerto Rico 00680, USA Abstract Coral diseases are characterized by microbial community shifts in coral mucus and tissue, but causes and consequences of these changes are vaguely understood due to the complexity and dynamics of coral-associated bacteria. We used 16S rRNA gene microarrays to assay differences in bacterial assemblages of healthy and diseased colo- nies displaying White Plague Disease (WPD) signs from two closely related Caribbean coral species, Orbicella faveolata and Orbicella franksi. Analysis of differentially abun- dant operational taxonomic units (OTUs) revealed strong differences between healthy and diseased specimens, but not between coral species. A subsequent comparison to data from two Indo-Pacific coral species (Pavona duerdeni and Porites lutea) revealed distinct microbial community patterns associated with ocean basin, coral species and health state. Coral species were clearly separated by site, but also, the relatedness of the underlying bacterial community structures resembled the phylogenetic relationship of the coral hosts. In diseased samples, bacterial richness increased and putatively opportunistic bacteria were consistently more abundant highlighting the role of oppor- tunistic conditions in structuring microbial community patterns during disease. Our comparative analysis shows that it is possible to derive conserved bacterial footprints of diseased coral holobionts that might help in identifying key bacterial species related to the underlying etiopathology. -
Summary Output
AC29 Doc. 13.3 Annex 1 Summary output To comply with paragraph 1 a) of Resolution Conf. 12.8 (Rev. CoP17), a summary output of trade in wild-sourced specimens was produced from data extracted from the CITES Trade Database on 26th April 2017. An excel version of the data output is also available (see AC29 Doc Inf. 4), which details the trade levels for each individual country with direct exports over the five most recent years (2011-2015). Table 1. Data included for the summary output of ‘wild-sourced’ trade Data included CITES Trade Database Gross exports; report type Direct trade only (re-exports are excluded) Current Appendix Appendix II taxa and Appendix I taxa subject to reservation Source codes1 Wild (‘W’), ranched (‘R’), unknown (‘U’) and no reported source (‘-’) Purpose codes1 All Terms included Selected terms2: baleen, bodies, bones, carapaces, carvings, cloth, eggs, egg (live), fins, gall and gall bladders, horns and horn pieces, ivory pieces, ivory carvings, live, meat, musk (including derivatives for Moschus moschiferus), plates, raw corals, scales, shells, skin pieces, skins, skeletons, skulls, teeth, trophies, and tusks. Units of measure Number (unit = blank) and weight (unit = kilogram3) [Trade in other units of measure (e.g. litres, metres etc.) were excluded] Year range 2011-20154 Contextual The global conservation status and population trend of the species as published information in The IUCN Red List of Threatened Species; Whether the species/country combination was subject to the Review of Significant Trade process for the last three iterations (post CoP14, post CoP15 and post CoP16); Whether the taxon was reported in trade for the first time within the CITES Trade Database since 2012 (e.g. -
(Scleractinia: Poritidae) in Isla Del Coco National Park, Costa Rica Jennifer N
High genotypic diversity of the reef-building coral Porites lobata (Scleractinia: Poritidae) in Isla del Coco National Park, Costa Rica Jennifer N. Boulay1, Jorge Cortés2, Jaime Nivia-Ruiz2 & Iliana B. Baums1 1. Department of Biology, The Pennsylvania State University, 208 Mueller Laboratory, University Park, Pennsylvania 16802, USA; [email protected] 2. Centro de Investigación en Ciencias del Mar y Limnología (CIMAR), Universidad de Costa Rica, San Pedro, 11501- 2060 San José, Costa Rica; [email protected] Received 02-III-2012. Corrected 25-IX-2012. Accepted 29-IX-2012. Abstract: The isolated Isla del Coco experiences periodic, extreme disturbances which devastate coral reefs surrounding the island. Scleractinian corals build the physical structure of the reef therefore ecosystem recovery relies on coral species recovery. Coral recruits can be of sexual or asexual origin, and the relative success of the two recruit types influences the speed and spread of recovery processes. Here we focus on the massive coral, Porites lobata, because it is the main reef-builder around Isla del Coco to describe the relative contribution of asexual and sexual recruits to population maintenance. P. lobata samples were collected using a spatially explicit random sampling design in three plots at Isla del Coco: Punta Ulloa (n=17), Bahía Weston (n=20) and Punta María (n=20) and samples were genotyped with 11 microsatellite markers. Additional sampling was conducted at three “coastal” sites near the Costa Rican mainland (Isla del Caño Biological Reserve): Caño1 (n=8), Caño2 (n=10), Caño5 (n=11) to compare the contributions of asexual and sexual recruits at Isla del Coco sites to coastal sites. -
Conservation of Reef Corals in the South China Sea Based on Species and Evolutionary Diversity
Biodivers Conserv DOI 10.1007/s10531-016-1052-7 ORIGINAL PAPER Conservation of reef corals in the South China Sea based on species and evolutionary diversity 1 2 3 Danwei Huang • Bert W. Hoeksema • Yang Amri Affendi • 4 5,6 7,8 Put O. Ang • Chaolun A. Chen • Hui Huang • 9 10 David J. W. Lane • Wilfredo Y. Licuanan • 11 12 13 Ouk Vibol • Si Tuan Vo • Thamasak Yeemin • Loke Ming Chou1 Received: 7 August 2015 / Revised: 18 January 2016 / Accepted: 21 January 2016 Ó Springer Science+Business Media Dordrecht 2016 Abstract The South China Sea in the Central Indo-Pacific is a large semi-enclosed marine region that supports an extraordinary diversity of coral reef organisms (including stony corals), which varies spatially across the region. While one-third of the world’s reef corals are known to face heightened extinction risk from global climate and local impacts, prospects for the coral fauna in the South China Sea region amidst these threats remain poorly understood. In this study, we analyse coral species richness, rarity, and phylogenetic Communicated by Dirk Sven Schmeller. Electronic supplementary material The online version of this article (doi:10.1007/s10531-016-1052-7) contains supplementary material, which is available to authorized users. & Danwei Huang [email protected] 1 Department of Biological Sciences and Tropical Marine Science Institute, National University of Singapore, Singapore 117543, Singapore 2 Naturalis Biodiversity Center, PO Box 9517, 2300 RA Leiden, The Netherlands 3 Institute of Biological Sciences, Faculty of