Multiple Botryosphaeria Species Causing 'Dothiorella' Gummosis In
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Botryosphaeria Infections in New Zealand Grapevine Nurseries: Sources of Inoculum and Infection Pathways
Lincoln University Digital Thesis Copyright Statement The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). This thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: you will use the copy only for the purposes of research or private study you will recognise the author's right to be identified as the author of the thesis and due acknowledgement will be made to the author where appropriate you will obtain the author's permission before publishing any material from the thesis. Botryosphaeria infections in New Zealand grapevine nurseries: Sources of inoculum and infection pathways A thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy in Plant Pathology by Regina Billones-Baaijens Lincoln University 2011 Abstract of a thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy in Plant Pathology Abstract Botryosphaeria infections in New Zealand grapevine nurseries: Inoculum sources and infection pathways by Regina Billones-Baaijens The botryosphaeriaceous fungi can cause decline, dieback and death of grapevines. Anecdotal evidence has indicated that these pathogens might be present in the young vines sold by propagation nurseries, so this study investigated their role in spread of this disease. Sampling of grapevine nurseries across New Zealand showed that botryosphaeriaceous infections were present in eight out of nine nurseries with infection incidence ranging from 5 to 63%. Of the 311 propagation materials and plants received, 23% were positive for botryosphaeriaceous infection, with a total of 120 isolates recovered. -
<I>Botryosphaeriales</I>
Persoonia 33, 2014: 155–168 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158514X684780 Confronting the constraints of morphological taxonomy in the Botryosphaeriales B. Slippers1, J. Roux2, M.J. Wingfield1, F.J.J. van der Walt2, F. Jami2, J.W.M. Mehl2, G.J. Marais3 Key words Abstract Identification of fungi and the International Code of Nomenclature underpinning this process, rests strongly on the characterisation of morphological structures. Yet, the value of these characters to define species in Botryosphaeriales many groups has become questionable or even superfluous. This has emerged as DNA-based techniques have morphotaxa increasingly revealed cryptic species and species complexes. This problem is vividly illustrated in the present phylogeny study where 105 isolates of the Botryosphaeriales were recovered from both healthy and diseased woody tissues taxonomy of native Acacia spp. in Namibia and South Africa. Thirteen phylogenetically distinct groups were identified based tree health on Internal Transcribed Spacer (ITS) rDNA PCR-RFLP and translation elongation factor 1-α (TEF1-α) sequence data, two loci that are known to be reliable markers to distinguish species in the Botryosphaeriales. Four of these groups could be linked reliably to sequence data for formerly described species, including Botryosphaeria dothidea, Dothiorella dulcispinae, Lasiodiplodia pseudotheobromae and Spencermartinsia viticola. Nine groups, however, could not be linked to any other species known from culture and for which sequence data are available. These groups are, therefore, described as Aplosporella africana, A. papillata, Botryosphaeria auasmontanum, Dothiorella capri-amissi, Do. oblonga, Lasiodiplodia pyriformis, Spencermartinsia rosulata, Sphaeropsis variabilis and an un- described Neofusicoccum sp. -
Mycosphere Notes 225–274: Types and Other Specimens of Some Genera of Ascomycota
Mycosphere 9(4): 647–754 (2018) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/9/4/3 Copyright © Guizhou Academy of Agricultural Sciences Mycosphere Notes 225–274: types and other specimens of some genera of Ascomycota Doilom M1,2,3, Hyde KD2,3,6, Phookamsak R1,2,3, Dai DQ4,, Tang LZ4,14, Hongsanan S5, Chomnunti P6, Boonmee S6, Dayarathne MC6, Li WJ6, Thambugala KM6, Perera RH 6, Daranagama DA6,13, Norphanphoun C6, Konta S6, Dong W6,7, Ertz D8,9, Phillips AJL10, McKenzie EHC11, Vinit K6,7, Ariyawansa HA12, Jones EBG7, Mortimer PE2, Xu JC2,3, Promputtha I1 1 Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand 2 Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, 132 Lanhei Road, Kunming 650201, China 3 World Agro Forestry Centre, East and Central Asia, 132 Lanhei Road, Kunming 650201, Yunnan Province, People’s Republic of China 4 Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, China 5 Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China 6 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 7 Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand 8 Department Research (BT), Botanic Garden Meise, Nieuwelaan 38, BE-1860 Meise, Belgium 9 Direction Générale de l'Enseignement non obligatoire et de la Recherche scientifique, Fédération Wallonie-Bruxelles, Rue A. -
Phytotoxins Produced by Fungi Associated with Grapevine Trunk Diseases
Toxins 2011, 3, 1569-1605; doi:10.3390/toxins3121569 OPEN ACCESS toxins ISSN 2072-6651 www.mdpi.com/journal/toxins Review Phytotoxins Produced by Fungi Associated with Grapevine Trunk Diseases Anna Andolfi 1,*, Laura Mugnai 2,*, Jordi Luque 3, Giuseppe Surico 2, Alessio Cimmino 1 and Antonio Evidente 1 1 Dipartimento di Scienze del Suolo, della Pianta, dell’Ambiente e delle Produzioni Animali, Università di Napoli Federico II, Via Università 100, Portici I-80055, Italy; E-Mails: [email protected] (A.C.); [email protected] (A.E.) 2 Dipartimento di Biotecnologie Agrarie, Sezione Protezione delle piante, Università degli Studi di Firenze, P.le delle Cascine 28, Firenze I-50144, Italy; E-Mail: [email protected] 3 Departament de Patologia Vegetal, IRTA, Ctra. de Cabrils km 2, Cabrils E-08348, Spain; E-Mail: [email protected] * Authors to whom correspondence should be addressed; E-Mails: [email protected] (A.A.); [email protected] (L.M.); Tel.: +39-081-2539-179 (A.A.); +39-055-3288-274 (L.M.); Fax: +39-081-2539-186 (A.A.); +39-055-3288-273 (L.M.). Received: 8 November 2011; in revised form: 29 November 2011 / Accepted: 30 November 2011 / Published: 20 December 2011 Abstract: Up to 60 species of fungi in the Botryosphaeriaceae family, genera Cadophora, Cryptovalsa, Cylindrocarpon, Diatrype, Diatrypella, Eutypa, Eutypella, Fomitiporella, Fomitiporia, Inocutis, Phaeoacremonium and Phaeomoniella have been isolated from decline-affected grapevines all around the World. The main grapevine trunk diseases of mature vines are Eutypa dieback, the esca complex and cankers caused by the Botryospheriaceae, while in young vines the main diseases are Petri and black foot diseases. -
First Report of Grapevine Dieback Caused by Lasiodiplodia Theobromae and Neoscytalidium Dimidiatum in Basrah, Southern Iraq
African Journal of Biotechnology Vol. 11(95), pp. 16165-16171, 27 November, 2012 Available online at http://www.academicjournals.org/AJB DOI: 10.5897/AJB12.010 ISSN 1684–5315 ©2012 Academic Journals Full Length Research Paper First report of grapevine dieback caused by Lasiodiplodia theobromae and Neoscytalidium dimidiatum in Basrah, Southern Iraq Abdullah H. Al-Saadoon1, Mohanad K. M. Ameen1, Muhammed A. Hameed2* Adnan Al-Badran1 and Zulfiqar Ali3 1Department of Biology, College of Science, Basrah University, Iraq. 2Date Palm Research Centre, Basra University, Iraq. 3Departments of Plant Breeding and Genetics, University of Agriculture, Faisalabad 38040, Pakistan. Accepted 30 March, 2012 In Basrah, grapevines suffer from dieback. Lasiodiplodia theobromae and Neoscytalidium dimidiatum were isolated from diseased grapevines, Vitis vinifera L. and identified based on morphological characteristics and DNA sequence data of the rDNA internal transcribed spacer (ITS) region. The results of the pathogenicity test conducted under greenhouse conditions for L. theobromae and N. dimidiatum reveal that both species were the causal agents of grapevines diebacks in Basrah, Southern Iraq. A brief description is provided for the isolated species. Key words: grapevine, dieback, Lasiodiplodia theobromae, Neoscytalidium dimidiatum, internal transcribed spacer (ITS), rDNA, Iraq. INTRODUCTION Grapevine, Vitis vinifera L. is the most widely planted fruit thern part of Haur Al-Hammar (at Qarmat Ali) to a new crop worldwide and is cultivated in all continents except canal, the “Al-Basrah Canal”, which runs parallel to Shatt Antarctica (Mullins et al., 1992). The area under planta- Al-Arab river into the Arabian Gulf (Bedair, 2006). Many tion in iraq is 240,000 hectares, and it has an annual environmental stress factors weaken plant hosts and production of 350,000 tons grape (FAO, 1996). -
Botryosphaeriaceae Species Overlap on Four Unrelated, Native South African Hosts
Botryosphaeriaceae species overlap on four unrelated, native South African hosts Fahimeh JAMI1*, Bernard SLIPPERS2, Michael J. WINGFIELD1, Marieka GRYZENHOUT3 1 Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, South Africa 2Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, South Africa 3Department of Plant Sciences, University of the Free State, Bloemfontein, South Africa, * Corresponding author. Tel.: +27124205819; Fax:0027 124203960. E-mail address: [email protected] ABSTRACT The Botryosphaeriaceae represents an important and diverse family of latent fungal pathogens of woody plants. While some species appear to have wide host ranges, others are reported only from single hosts. It is, however, not clear whether apparently narrow host ranges reflect specificity or if this is an artifact of sampling. We address this question by sampling leaves and branches of native South African trees from four different families, including Acacia karroo (Fabaceae), Celtis africana (Cannabaceae), Searsia lancea (Anacardiaceae) and Gymnosporia buxifolia (Celastraceae). As part of this process, two new species of the Botryosphaeriaceae, namely Tiarosporella africana sp. nov. and Aplosporella javeedii sp. nov., emerged from sequence comparisons based on the ITS rDNA, TEF-1α, β-tubulin and LSU rDNA gene regions. An additional five known species were identified including Neofusicoccum parvum, N. kwambonambiense, Spencermartinsia viticola, Diplodia pseudoseriata and Botryosphaeria dothidea. Despite extensive sampling of the trees, some of these species were not isolated on many of the hosts as was expected. For example, B. dothidea, which is known to have a broad host range but was found only on A. -
Phylogenetic Lineages in the Botryosphaeriaceae
STUDIES IN MYCOLOGY 55: 235–253. 2006. Phylogenetic lineages in the Botryosphaeriaceae Pedro W. Crous1*, Bernard Slippers2, Michael J. Wingfield2, John Rheeder3, Walter F.O. Marasas3, Alan J.L. Philips4, Artur Alves5, Treena Burgess6, Paul Barber6 and Johannes Z. Groenewald1 1Centraalbureau voor Schimmelcultures, Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands; 2Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, University of Pretoria, South Africa; 3PROMEC Unit, Medical Research Council, P.O. Box 19070, 7505 Tygerberg, South Africa; 4Centro de Recursos Microbiológicos, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal; 5Centro de Biologia Celular, Departamento de Biologia, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal; 6School of Biological Sciences & Biotechnology, Murdoch University, Murdoch 6150, WA, Australia *Correspondence: Pedro W. Crous, [email protected] Abstract: Botryosphaeria is a species-rich genus with a cosmopolitan distribution, commonly associated with dieback and cankers of woody plants. As many as 18 anamorph genera have been associated with Botryosphaeria, most of which have been reduced to synonymy under Diplodia (conidia mostly ovoid, pigmented, thick-walled), or Fusicoccum (conidia mostly fusoid, hyaline, thin-walled). However, there are numerous conidial anamorphs having morphological characteristics intermediate between Diplodia and Fusicoccum, and there are several records of species outside the Botryosphaeriaceae that have anamorphs apparently typical of Botryosphaeria s.str. Recent studies have also linked Botryosphaeria to species with pigmented, septate ascospores, and Dothiorella anamorphs, or Fusicoccum anamorphs with Dichomera synanamorphs. The aim of this study was to employ DNA sequence data of the 28S rDNA to resolve apparent lineages within the Botryosphaeriaceae. -
Five New Species of the Botryosphaeriaceae from Acacia Karroo in South Africa
ERRATUM PUBLICATION DE 2012, FASCICULE 3 (Auteurs corrigés) Cryptogamie, Mycologie, 2012, 33 (3) Numéro spécial Coelomycetes: 245-266 © 2012 Adac. Tous droits réservés Five new species of the Botryosphaeriaceae from Acacia karroo in South Africa Fahimeh JAMIa, Bernard SLIPPERSb, Mike J. WINGFIELDa & Marieka GRYZENHOUTc,* aDepartment of Microbiology and Plant Pathology, University of Pretoria, Pretoria, South Africa bDepartment of Genetics, Forestry & Agricultural Biotechnology Institute, University of Pretoria, Pretoria, South Africa cDepartment of Plant Sciences, University of the Free State, Bloemfontein, South Africa email: [email protected] Abstract – The Botryosphaeriaceae represents an important, cosmopolitan family of latent pathogens infecting woody plants. Recent studies on native trees in southern Africa have revealed an extensive diversity of species of Botryosphaeriaceae, about half of which have not been previously described. This study adds to this growing body of knowledge, by discovering five new species of the Botryosphaeriaceae on Acacia karroo, a commonly occurring native tree in southern Africa. These species were isolated from both healthy and diseased tissues, suggesting they could be latent pathogens. The isolates were compared to other species for which DNA sequence data are available using phylogenetic analyses based on the ITS, TEF-1α, β-tubulin and LSU gene regions, and characterized based on their morphology. The morphological data were, however, useful to make comparisons with other species found in the same region and on similar hosts. The five new species were described as Diplodia allocellula, Dothiorella dulcispinae, Do. brevicollis, Spencermartinsia pretoriensis and Tiarosporella urbis-rosarum. Evidence emerging from this study suggests that many more species of the Botryosphaeriaceae remain to be discovered in the southern Africa. -
Botryosphaeria Dothidea
Hu et al. IMA Fungus (2019) 10:3 https://doi.org/10.1186/s43008-019-0008-4 IMA Fungus RESEARCH Open Access Comprehensive analysis of full genome sequence and Bd-milRNA/target mRNAs to discover the mechanism of hypovirulence in Botryosphaeria dothidea strains on pear infection with BdCV1 and BdPV1 Wangcheng Hu1,2,3†, Hui Luo1,2,3†, Yuekun Yang1,2,3, Qiong Wang1,2,3, Ni Hong1,2,3, Guoping Wang1,2,3, Aiming Wang4 and Liping Wang1,2,3* Abstract Pear ring rot disease, mainly caused by Botryosphaeria dothidea, is widespread in most pear and apple-growing regions. Mycoviruses are used for biocontrol, especially in fruit tree disease. BdCV1 (Botryosphaeria dothidea chrysovirus 1) and BdPV1 (Botryosphaeria dothidea partitivirus 1) influence the biological characteristics of B. dothidea strains. BdCV1 is a potential candidate for the control of fungal disease. Therefore, it is vital to explore interactions between B. dothidea and mycovirus to clarify the pathogenic mechanisms of B. dothidea and hypovirulence of B. dothidea in pear. A high- quality full-length genome sequence of the B. dothidea LW-Hubei isolate was obtained using Single Molecule Real- Time sequencing. It has high repeat sequence with 9.3% and DNA methylation existence in the genome. The 46.34 Mb genomes contained 14,091 predicted genes, which of 13,135 were annotated. B. dothidea was predicted to express 3833 secreted proteins. In bioinformatics analysis, 351 CAZy members, 552 transporters, 128 kinases, and 1096 proteins associated with plant-host interaction (PHI) were identified. RNA-silencing components including two endoribonuclease Dicer, four argonaute (Ago) and three RNA-dependent RNA polymerase (RdRp) molecules were identified and expressed in response to mycovirus infection. -
Grapevine Trunk Diseases Symptoms and Distribution
Grapevine Trunk Diseases symptoms and distribution Background Grapevine trunk diseases are caused by fungal pathogens that grow primarily in mature wood. These can infect either: 1. propagation material and affect growth of newly planted vines; or 2. established vines through wounds (primarily pruning wounds) causing a loss of productivity, often as grapevines reach elite stage of maturity. Grapevine trunk diseases affect vineyard productivity through: ■ increased production cost; ■ yield loss and reduced quality; Figure 1 Botryosphaeria dieback causes dead arm or dieback of the cordons and and trunk. ■ decreased vineyard longevity. Photograph: Wayne Pitt The most prevalent grapevine trunk Symptoms diseases in Australia are: The two diseases are often mistaken 1. botryosphaeria dieback for each other because some of the (formerly known as bot canker); symptoms are identical (Table 1). Fungi and enter the vine via pruning wounds or 2. eutypa dieback. other exposed areas causing dieback Botryosphaeria dieback is caused of the grapevine often described as by a number of species within the dead arm (Figure 1). Damage to the Botryosphaeriaceae family. These vascular system results in the loss of fungi infect a wide range of hosts spur positions along the cordon and but are most commonly associated may progress to the trunk (Figure 2). with diseases of woody plants such Wedge-shaped cankers in the trunks as acacia and eucalyptus. Several and cordons of declining grapevines Botryosphaeriaceae species are visible upon cross sectioning are found in most grape growing regions characteristic of both diseases of Australia. (Figure 3). Eutypa dieback is caused by the Other symptoms may include: fungus Eutypa lata. -
Dothiorella Magnoliae, a New Species Associated with Dieback of Magnolia Grandiflora from China
Mycosphere 8 (2): 1031–1041 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/2/6 Copyright © Guizhou Academy of Agricultural Sciences Dothiorella magnoliae, a new species associated with dieback of Magnolia grandiflora from China You CJ1, Liu X1, Li LX1, Tsui CKM2 and Tian CM1* 1 The Key Laboratory for Silviculture and Conservation of Ministry of Education, Beijing Forestry University, Beijing 100083, China 2 Faculty of Medicine, University of British Columbia, Vancouver, Canada V6H 3Z6 You CJ, Liu X, Li LX, Tsui CKM, Tian CM 2017 – Dothiorella magnoliae, a new species associated with dieback of Magnolia grandiflora from China. Mycosphere 8(2), 1031–1041, Doi 10.5943/mycosphere/8/2/6 Abstract Dothiorella magnoliae sp. nov. was identified and isolated from Magnolia grandiflora from Sichuan Province in China. The new taxon is described and illustrated based on unique morphological characteristics and phylogenetic analysis of the internal transcribed spacer (ITS) rDNA, and partial sequences of the elongation factor 1–α (tef1-α) gene. Morphologically, D. magnoliae produces conidia with conspicuous constriction at septum and it also differs from other described Dothiorella species in the dimensions of conidia. Molecular data reveal that D. magnoliae forms a sister clade to other species of Dothiorella, thus a new species is introduced here. Key words – Dothiorella – Magnolia dieback – multigene phylogeny – taxonomy Introduction Dothiorella species, like other members of the family Botryosphaeriaceae, are known to be pathogens, endophytes, and saprobes on a wide range of mainly woody hosts (Phillips et al. 2008, 2013, Abdollahzadeh et al. 2014, Li et al. 2014, Pitt et al. -
Bot Gummosis of Lemon (Citrus Limon)
Journal of Fungi Article Bot Gummosis of Lemon (Citrus × limon) Caused by Neofusicoccum parvum Francesco Aloi 1,2,†, Mario Riolo 1,3,4,† , Rossana Parlascino 1, Antonella Pane 1,* and Santa Olga Cacciola 1,* 1 Department of Agriculture, Food and Environment, University of Catania, 95123 Catania, Italy; [email protected] (F.A.); [email protected] (M.R.); [email protected] (R.P.) 2 Department of Agricultural, Food and Forest Sciences, University of Palermo, 90128 Palermo, Italy 3 Council for Agricultural Research and Agricultural Economy Analysis, Research Centre for Olive, Citrus and Tree Fruit-Rende CS (CREA-OFA), 87036 Rende, Italy 4 Department of Agricultural Science, Mediterranean University of Reggio Calabria, 89122 Reggio Calabria, Italy * Correspondence: [email protected] (A.P.); [email protected] (S.O.C.) † These authors have equally contributed to the study. Abstract: Neofusicoccum parvum, in the family Botryosphaeriaceae, was identified as the causal agent of bot gummosis of lemon (Citrus × limon) trees, in the two major lemon-producing regions in Italy. Gummy cankers on trunk and scaffold branches of mature trees were the most typical disease symptoms. Neofusicoccum parvum was the sole fungus constantly and consistently isolated from the canker bark of symptomatic lemon trees. It was identified on the basis of morphological characters and the phylogenetic analysis of three loci, i.e., the internal transcribed spacer of nuclear ribosomal DNA (ITS) as well as the translation elongation factor 1-alpha (TEF1) and β-tubulin (TUB2) genes. The pathogenicity of N. parvum was demonstrated by wound inoculating two lemon cultivars, ‘Femminello 2kr’ and ‘Monachello’, as well as citrange (C.