The Lichen of British Columbia
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Phylogeny of the Cetrarioid Core (Parmeliaceae) Based on Five
The Lichenologist 41(5): 489–511 (2009) © 2009 British Lichen Society doi:10.1017/S0024282909990090 Printed in the United Kingdom Phylogeny of the cetrarioid core (Parmeliaceae) based on five genetic markers Arne THELL, Filip HÖGNABBA, John A. ELIX, Tassilo FEUERER, Ingvar KÄRNEFELT, Leena MYLLYS, Tiina RANDLANE, Andres SAAG, Soili STENROOS, Teuvo AHTI and Mark R. D. SEAWARD Abstract: Fourteen genera belong to a monophyletic core of cetrarioid lichens, Ahtiana, Allocetraria, Arctocetraria, Cetraria, Cetrariella, Cetreliopsis, Flavocetraria, Kaernefeltia, Masonhalea, Nephromopsis, Tuckermanella, Tuckermannopsis, Usnocetraria and Vulpicida. A total of 71 samples representing 65 species (of 90 worldwide) and all type species of the genera are included in phylogentic analyses based on a complete ITS matrix and incomplete sets of group I intron, -tubulin, GAPDH and mtSSU sequences. Eleven of the species included in the study are analysed phylogenetically for the first time, and of the 178 sequences, 67 are newly constructed. Two phylogenetic trees, one based solely on the complete ITS-matrix and a second based on total information, are similar, but not entirely identical. About half of the species are gathered in a strongly supported clade composed of the genera Allocetraria, Cetraria s. str., Cetrariella and Vulpicida. Arctocetraria, Cetreliopsis, Kaernefeltia and Tuckermanella are monophyletic genera, whereas Cetraria, Flavocetraria and Tuckermannopsis are polyphyletic. The taxonomy in current use is compared with the phylogenetic results, and future, probable or potential adjustments to the phylogeny are discussed. The single non-DNA character with a strong correlation to phylogeny based on DNA-sequences is conidial shape. The secondary chemistry of the poorly known species Cetraria annae is analyzed for the first time; the cortex contains usnic acid and atranorin, whereas isonephrosterinic, nephrosterinic, lichesterinic, protolichesterinic and squamatic acids occur in the medulla. -
Duke Pharmaceutieal Uhiversic}L Nojio 2-522-I, Ktyose, 7Bkyo, 204-8588 Jmpan; Uitiversi(B Box 90338 Durham, IVC27708-O038, CLSA
The JapaneseSocietyJapanese Society for Plant Systematics ISSN 1346-756S Acta Phytotax. Geobot. 54 (2): 99-104 (2003) Bivoriahengduanensis (Lichenized Ascomycota, Parmeliaceae), a New Species from Southern China LI-SONG WANGi, HIROSHI HARADA2, TAKAO NARUI3, CHICITA F. CULBERSON` and WILLIAM L. CULBERSON` iKiinmingfnstitute ofBotarLM ChineseAcadenry qf'Seienee, Ileilongtan, Kiinming funnan 650204, enina; 2 3 History Aoba-eho 955-2, Chuo-ku, Chiba, 260-8682 .lopan; Mbiji Ndtural imseum and institute,Chiba, 4Duke Pharmaceutieal Uhiversic}l Nojio 2-522-I, Ktyose, 7bkyo, 204-8588 Jmpan; Uitiversi(B Box 90338 Durham, IVC27708-O038, CLSA, BtJ)oria hengduanensis L. S. Wang & H. Harada sp. nov., from YUnnan and Sichuan in southern China, is characterized by a pendant thallus, pseudocyphellae spiraling around the branches, meduilary hyphae, and usnic and fumarprotocetraric acids. The closely related B. pseudocupillaris Brodo & D, Hawksw. and B. spiraltfeva Brodo & D. Hawksw, have white pseudocyphellae, andB. tortuosa Brodo & D. L, Hawksw, is sorediate, The new species also differs from all three ofthese North American species by chemistry. Key werds: Alectoria, BT;yoria, chemistry, China, lichenized Ascomycota, new species, OTqpogon, Sichuan, Sulcaria, taxonomy, Minnan Alectorioid lichens are characterized by a fruticose Materials and Methods thallus, terete branches, a distinct cortical layer, an arachnoid medulla without a central axis, a tre- The description ofthe external morphology is based bouxioid photobiont, and lecanorine apothecia. on air-dried material observed under a dissecting They are widely distributed in the world and are rep- microscope, For anatomical description, sections resented in East Asia by Alectoria Ach. in Luyken, rnade with a razor blade were mounted in lac- Br:voria Brodo & D. -
Global Biodiversity Patterns of the Photobionts Associated with the Genus Cladonia (Lecanorales, Ascomycota)
Microbial Ecology https://doi.org/10.1007/s00248-020-01633-3 FUNGAL MICROBIOLOGY Global Biodiversity Patterns of the Photobionts Associated with the Genus Cladonia (Lecanorales, Ascomycota) Raquel Pino-Bodas1 & Soili Stenroos2 Received: 19 August 2020 /Accepted: 22 October 2020 # The Author(s) 2020 Abstract The diversity of lichen photobionts is not fully known. We studied here the diversity of the photobionts associated with Cladonia, a sub-cosmopolitan genus ecologically important, whose photobionts belong to the green algae genus Asterochloris. The genetic diversity of Asterochloris was screened by using the ITS rDNA and actin type I regions in 223 specimens and 135 species of Cladonia collected all over the world. These data, added to those available in GenBank, were compiled in a dataset of altogether 545 Asterochloris sequences occurring in 172 species of Cladonia. A high diversity of Asterochloris associated with Cladonia was found. The commonest photobiont lineages associated with this genus are A. glomerata, A. italiana,andA. mediterranea. Analyses of partitioned variation were carried out in order to elucidate the relative influence on the photobiont genetic variation of the following factors: mycobiont identity, geographic distribution, climate, and mycobiont phylogeny. The mycobiont identity and climate were found to be the main drivers for the genetic variation of Asterochloris. The geographical distribution of the different Asterochloris lineages was described. Some lineages showed a clear dominance in one or several climatic regions. In addition, the specificity and the selectivity were studied for 18 species of Cladonia. Potentially specialist and generalist species of Cladonia were identified. A correlation was found between the sexual reproduction frequency of the host and the frequency of certain Asterochloris OTUs. -
A Re-Examination of John Shirley's Collection of Tasmanian Lichens
l'u;,ns u11d Proceedings of'the Rom/ Socicrv n/7L1snw111a, Volume 122(2), /9RR 59 A RE-EXAMINATION OF JOHN SHIRLEY'S COLLECTION OF TASMANIAN LICHENS by Gintaras Kantvilas (with one table and one plate) KANTVILAS, G., 1988 (31 :x): A re-examination of John Shirley's collection of Tasmanian lichens. Pap. Proc. R. So, Tasn1. 122(2): 59-67. https://doi.org/10.26749/rstpp.122.2.59 ISSN 0080-4703. Department of Botany, University of Tasmania. G.P.O. Box 252(' Hohart. Tasmania, Australia 700 I. The Tasmanian lichen collection of John Shirley (1849-1922) (housed in the Queensland Herharium) is examined and re-determined. Two new comhinations, Rinodina 11sperat11 (Shirley) Kantvilas and P_1Tcn11/a ga!aoina (Shirley) Kantvilas, are proposed, and lectotypes are set up for Bacidia weymouthii (Shirley) Zahlbr. and Pyrenu/a ch/oroplaca Shirley from authentic material. Several lichen records are based on misidentifications and are deleted from the checklist of Tasmanian lichens. Key Words: Shirley, lichens, Tasmania. INTRODUCTION Shirley's a,sociation with Tasmania began in 1892 when he visited Hobart for a meeting of the John Francis Shirley was born in Dorchester, AAAS, held on 7-16 January. There he studied England, on 11 August 1849 and died in Brisbane. plants on nearby Mt Wellington and made the Australia, on 5 April 1922. He graduated with a acquaintance of William Anderson Weymouth, one Bachelor of Science degree from the University of of the leading amateur cryptogamic botanists in London where he qualified as a teacher. In 1878, he Tasmania at that time (Kantvilas 1983). -
Monitoring Air Quality in Class I Wilderness Areas of the Northeastern United States Using Lichens and Bryophytes Alison C
United States Department of Agriculture Monitoring Air Quality in Class I Wilderness Areas of the Northeastern United States Using Lichens and Bryophytes Alison C. Dibble, James W. Hinds, Ralph Perron, Natalie Cleavitt, Richard L. Poirot, and Linda H. Pardo Forest Service Northern Research Station General Technical Report NRS-165 December 2016 1 Abstract To address a need for air quality and lichen monitoring information for the Northeast, we compared bulk chemistry data from 2011-2013 to baseline surveys from 1988 and 1993 in three Class I Wilderness areas of New Hampshire and Vermont. Plots were within the White Mountain National Forest (Presidential Range—Dry River Wilderness and Great Gulf Wilderness, New Hampshire) and the Green Mountain National Forest (Lye Brook Wilderness, Vermont). We sampled epiphyte communities and found 58 macrolichen species and 55 bryophyte species. We also analyzed bulk samples for total N, total S, and 27 additional elements. We detected a decrease in Pb at the level of the National Forest and in a subset of plots. Low lichen richness and poor thallus condition at Lye Brook corresponded to higher N and S levels at these sites. Lichen thallus condition was best where lichen species richness was also high. Highest Hg content, from a limited subset, was on the east slope of Mt. Washington near the head of Great Gulf. Most dominant lichens in good condition were associated with conifer boles or acidic substrates. The status regarding N and S tolerance for many lichens in the northeastern United States is not clear, so the influence of N pollution on community data cannot be fully assessed. -
Lichen Biota of the “Wrzosowiska Cedyńskie Im. Inż. Wiesława Czyżewskiego” Nature Reserve in the Cedynia Landscape Park (NW Poland)
#0# Acta Biologica 24/2017 | www.wnus.edu.pl/ab | DOI: 10.18276/ab.2017.24-14 | strony 159–170 Lichen biota of the “Wrzosowiska Cedyńskie im. inż. Wiesława Czyżewskiego” nature reserve in the Cedynia Landscape Park (NW Poland) Anetta Wieczorek,1 Andrzej Łysko2 1 Department of Ecology, Institute for Research on Biodiversity, Faculty of Biology, University of Szczecin, Wąska 13, 71-412 Szczecin, Poland, *corresponding author: [email protected] 2 Department of Environmental Protection and Management, Western Pomeranian University of Technology, Szczecin, Poland, e-mail: [email protected] Keywords xerothermic lichens, rare lichens, protected species, threatened lichens, nature reserve, NW Poland Abstract Lichens of the “Wrzosowiska Cedyńskie im. inż. Wiesława Czyżewskiego” nature reserve were studied in 2005 and 2011. Within the examined area, 103 species of lichens were ob- served. These include 23 species that are new to this area, some of them calciphilous, e.g. Agonima gelatinosa and Collema crispum. Many of them are rare in the Polish lowlands, e.g. Cladonia stellaris, Rhizocarpon geographicum, R. polycarpum, Stereocaulon condensatum, and S. incrustatum. Biota porostów rezerwatu “Wrzosowiska Cedyńskie im. inż. Wiesława Czyżewskiego” w Cedyńskim Parku Krajobrazowym Słowa kluczowe porosty kserotermiczne, porosty rzadkie, gatunki chronione, porosty zagrożone, rezerwat przyrody, NW Polska Streszczenie Porosty rezerwatu “Wrzosowiska Cedyńskie im. Wiesława Czyżewskiego” badano w 2005 i 2011 roku. Na badanym obszarze zaobserwowano 103 gatunki porostów. Wśrod nich 23 tak- sony to gatunki nowe na tym obszarze, niektóre z nich to porosty kalcyfilne np.Agonima gelati- nosa i Collema crispum. Wiele z nich jest rzadkich na polskich nizinach, np. Cladonia stellaris, Rhizocarpon geographicum, R. -
Fungal-Algal Interactions in Ramalina Menziesii and Its Associated Epiphytic Lichen Community
The Lichenologist 44(4): 543–560 (2012) 6 British Lichen Society, 2012 doi:10.1017/S0024282912000138 Fungal-algal interactions in Ramalina menziesii and its associated epiphytic lichen community Silke WERTH Abstract: Lichens are a fascinating example of a symbiotic mutualism. It is still uncertain which processes guide fungal-photobiont interactions, and whether they are random or of a more complex nature. Here, the fungal-algal interactions in Ramalina menziesii and co-occurring taxa are analyzed by using DNA sequences of the algal Internal Transcribed Spacer region (ITS), to investigate fungal- algal associations in juvenile R. menziesii and allied species. Algal species were identified by a com- bination of BLAST searches, median-joining network analysis, and Bayesian phylogenetics. Fungal- algal networks were analyzed for nestedness, both at the species and haplotype level (fungal species vs. algal haplotypes), and the networks were inspected for evidence of compartmentalization. Bayesian phylogenetic trees indicated that the widespread green alga Trebouxia decolorans associated with R. menziesii, as well as six other fungal species. Four additional fungal species interacted with four different species of Trebouxia. Only in one out of ten samples were algal haplotypes shared with the nearest neighbours of juvenile R. menziesii. Fungal-algal species interactions were compartmen- talized, while at the level of algal haplotypes, nestedness was found. This pattern is similar to the compartmentalization found in other intimately interacting mutualists. Key words: compartmentalization, lichen-forming fungi, nestedness, photobiont, species interactions, specificity, symbiosis Accepted for publication 7 February 2012 Introduction one-to-one species, as well as haplotype in- teractions, have been analyzed in the lichen Species interactions are a major factor struc- symbiosis. -
1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families ⇑ Jolanta Miadlikowska A, , Frank Kauff B,1, Filip Högnabba C, Jeffrey C
Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, Soili Stenroos c,10 a Department of Biology, Duke University, Durham, NC 27708-0338, USA b FB Biologie, Molecular Phylogenetics, 13/276, TU Kaiserslautern, Postfach 3049, 67653 Kaiserslautern, Germany c Botanical Museum, Finnish Museum of Natural History, FI-00014 University of Helsinki, Finland d Department of Ecology and Evolutionary Biology, Yale University, 358 ESC, 21 Sachem Street, New Haven, CT 06511, USA e Institut für Botanik, Karl-Franzens-Universität, Holteigasse 6, A-8010 Graz, Austria f Department of Plant Taxonomy and Nature Conservation, University of Gdan´sk, ul. Wita Stwosza 59, 80-308 Gdan´sk, Poland g Science and Education, The Field Museum, 1400 S. -
Lichen Functional Trait Variation Along an East-West Climatic Gradient in Oregon and Among Habitats in Katmai National Park, Alaska
AN ABSTRACT OF THE THESIS OF Kaleigh Spickerman for the degree of Master of Science in Botany and Plant Pathology presented on June 11, 2015 Title: Lichen Functional Trait Variation Along an East-West Climatic Gradient in Oregon and Among Habitats in Katmai National Park, Alaska Abstract approved: ______________________________________________________ Bruce McCune Functional traits of vascular plants have been an important component of ecological studies for a number of years; however, in more recent times vascular plant ecologists have begun to formalize a set of key traits and universal system of trait measurement. Many recent studies hypothesize global generality of trait patterns, which would allow for comparison among ecosystems and biomes and provide a foundation for general rules and theories, the so-called “Holy Grail” of ecology. However, the majority of these studies focus on functional trait patterns of vascular plants, with a minority examining the patterns of cryptograms such as lichens. Lichens are an important component of many ecosystems due to their contributions to biodiversity and their key ecosystem services, such as contributions to mineral and hydrological cycles and ecosystem food webs. Lichens are also of special interest because of their reliance on atmospheric deposition for nutrients and water, which makes them particularly sensitive to air pollution. Therefore, they are often used as bioindicators of air pollution, climate change, and general ecosystem health. This thesis examines the functional trait patterns of lichens in two contrasting regions with fundamentally different kinds of data. To better understand the patterns of lichen functional traits, we examined reproductive, morphological, and chemical trait variation along precipitation and temperature gradients in Oregon. -
Lichens of Alaska's South Coast
United States Department of Agriculture Lichens of Alaska’s South Coast Forest Service R10-RG-190 Alaska Region Reprint April 2014 WHAT IS A LICHEN? Lichens are specialized fungi that “farm” algae as a food source. Unlike molds, mildews, and mushrooms that parasitize or scavenge food from other organisms, the fungus of a lichen cultivates tiny algae and / or blue-green bacteria (called cyanobacteria) within the fabric of interwoven fungal threads that form the body of the lichen (or thallus). The algae and cyanobacteria produce food for themselves and for the fungus by converting carbon dioxide and water into sugars using the sun’s energy (photosynthesis). Thus, a lichen is a combination of two or sometimes three organisms living together. Perhaps the most important contribution of the fungus is to provide a protective habitat for the algae or cyanobacteria. The green or blue-green photosynthetic layer is often visible between two white fungal layers if a piece of lichen thallus is torn off. Most lichen-forming fungi cannot exist without the photosynthetic partner because they have become dependent on them for survival. But in all cases, a fungus looks quite different in the lichenized form compared to its free-living form. HOW DO LICHENS REPRODUCE? Lichens sexually reproduce with fruiting bodies of various shapes and colors that can often look like miniature mushrooms. These are called apothecia (Fig. 1) and contain spores that germinate and Figure 1. Apothecia, fruiting grow into the fungus. Each bodies fungus must find the right photosynthetic partner in order to become a lichen. Lichens reproduce asexually in several ways. -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
One Hundred New Species of Lichenized Fungi: a Signature of Undiscovered Global Diversity
Phytotaxa 18: 1–127 (2011) ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Monograph PHYTOTAXA Copyright © 2011 Magnolia Press ISSN 1179-3163 (online edition) PHYTOTAXA 18 One hundred new species of lichenized fungi: a signature of undiscovered global diversity H. THORSTEN LUMBSCH1*, TEUVO AHTI2, SUSANNE ALTERMANN3, GUILLERMO AMO DE PAZ4, ANDRÉ APTROOT5, ULF ARUP6, ALEJANDRINA BÁRCENAS PEÑA7, PAULINA A. BAWINGAN8, MICHEL N. BENATTI9, LUISA BETANCOURT10, CURTIS R. BJÖRK11, KANSRI BOONPRAGOB12, MAARTEN BRAND13, FRANK BUNGARTZ14, MARCELA E. S. CÁCERES15, MEHTMET CANDAN16, JOSÉ LUIS CHAVES17, PHILIPPE CLERC18, RALPH COMMON19, BRIAN J. COPPINS20, ANA CRESPO4, MANUELA DAL-FORNO21, PRADEEP K. DIVAKAR4, MELIZAR V. DUYA22, JOHN A. ELIX23, ARVE ELVEBAKK24, JOHNATHON D. FANKHAUSER25, EDIT FARKAS26, LIDIA ITATÍ FERRARO27, EBERHARD FISCHER28, DAVID J. GALLOWAY29, ESTER GAYA30, MIREIA GIRALT31, TREVOR GOWARD32, MARTIN GRUBE33, JOSEF HAFELLNER33, JESÚS E. HERNÁNDEZ M.34, MARÍA DE LOS ANGELES HERRERA CAMPOS7, KLAUS KALB35, INGVAR KÄRNEFELT6, GINTARAS KANTVILAS36, DOROTHEE KILLMANN28, PAUL KIRIKA37, KERRY KNUDSEN38, HARALD KOMPOSCH39, SERGEY KONDRATYUK40, JAMES D. LAWREY21, ARMIN MANGOLD41, MARCELO P. MARCELLI9, BRUCE MCCUNE42, MARIA INES MESSUTI43, ANDREA MICHLIG27, RICARDO MIRANDA GONZÁLEZ7, BIBIANA MONCADA10, ALIFERETI NAIKATINI44, MATTHEW P. NELSEN1, 45, DAG O. ØVSTEDAL46, ZDENEK PALICE47, KHWANRUAN PAPONG48, SITTIPORN PARNMEN12, SERGIO PÉREZ-ORTEGA4, CHRISTIAN PRINTZEN49, VÍCTOR J. RICO4, EIMY RIVAS PLATA1, 50, JAVIER ROBAYO51, DANIA ROSABAL52, ULRIKE RUPRECHT53, NORIS SALAZAR ALLEN54, LEOPOLDO SANCHO4, LUCIANA SANTOS DE JESUS15, TAMIRES SANTOS VIEIRA15, MATTHIAS SCHULTZ55, MARK R. D. SEAWARD56, EMMANUËL SÉRUSIAUX57, IMKE SCHMITT58, HARRIE J. M. SIPMAN59, MOHAMMAD SOHRABI 2, 60, ULRIK SØCHTING61, MAJBRIT ZEUTHEN SØGAARD61, LAURENS B. SPARRIUS62, ADRIANO SPIELMANN63, TOBY SPRIBILLE33, JUTARAT SUTJARITTURAKAN64, ACHRA THAMMATHAWORN65, ARNE THELL6, GÖRAN THOR66, HOLGER THÜS67, EINAR TIMDAL68, CAMILLE TRUONG18, ROMAN TÜRK69, LOENGRIN UMAÑA TENORIO17, DALIP K.