Maldimini-1 Matrix-Assisted Laser Desorption/Ionization Digital Ion
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Ion Trap Quantum Computer Selected Topics
Ion Trap Quantum Computer Selected Topics Ruben Andrist & Thomas Uehlinger 1 Outline Ion Traps Part I Deutsch-Josza Deutsch-Josza algorithm Problem Algorithm Implementation Part II Scalability Scalability of ion trap Problem Move ions quantum computers Microtraps Photons Charges Part III Roundup Roundup & Outlook Ruben Andrist Thomas Uehlinger 2 0:98.')4Part+8, 6: ,I39:2 .07.:09 $ " % H " !1 1# %1#% Quantum Algorithms H !1 1# %! 1#% 0"0.9743(.6:-(9 ( 5 ! ! 5 &1 ( 5 " "$1&!' 5 249(43,"6:-(9 # H !1 1# %1#%!4389,39( H !1 1# %! 1#% !,$,3.0/) ":,39:2,3,()8+8 ,+;08 9/0 7+,/9,38107 ,1907 ,8+3,(0 20,8:702039 3 W 0:98.)*# ,48.,*!74. # $4. 343/439*;99> W A0B803*C ):,3E*",3/"C*,2-7A/E0; > Implementation of the Deutsch-Josza Ion Traps algorithm using trapped ions Deutsch-Josza Problem ! show suitability of ion traps Algorithm Implementation ! relatively simple algorithm Scalability Problem ! using only one trapped ion Move ions Microtraps Photons Charges Paper: Nature 421, 48-50 (2 January 2003), doi:10.1038/nature01336; Institut für Experimentalphysik, Universität Innsbruck ! Roundup ! MIT Media Laboratory, Cambridge, Massachusetts Ruben Andrist Thomas Uehlinger 4 The two problems Ion Traps The Deutsch-Josza Problem: Deutsch-Josza ! Bob uses constant or balanced function Problem Alice has to determine which kind Algorithm ! Implementation Scalability Problem The Deutsch Problem: Move ions Bob uses a fair or forged coin Microtraps ! Photons ! Alice has to determine which kind Charges Roundup Ruben Andrist Thomas Uehlinger 5 Four -
ADVANCED SPECTROMETER Introduction
ADVANCED SPECTROMETER Introduction In principle, a spectrometer is the simplest of scientific very sensitive detection and precise measurement, a real instruments. Bend a beam of light with a prism or diffraction spectrometer is a bit more complicated. As shown in Figure grating. If the beam is composed of more than one color of 1, a spectrometer consists of three basic components; a light, a spectrum is formed, since the various colors are collimator, a diffracting element, and a telescope. refracted or diffracted to different angles. Carefully measure The light to be analyzed enters the collimator through a the angle to which each color of light is bent. The result is a narrow slit positioned at the focal point of the collimator spectral "fingerprint," which carries a wealth of information lens. The light leaving the collimator is therefore a thin, about the substance from which the light emanates. parallel beam, which ensures that all the light from the slit In most cases, substances must be hot if they are to emit strikes the diffracting element at the same angle of inci- light. But a spectrometer can also be used to investigate cold dence. This is necessary if a sharp image is to be formed. substances. Pass white light, which contains all the colors of The diffracting element bends the beam of light. If the beam the visible spectrum, through a cool gas. The result is an is composed of many different colors, each color is dif- absorption spectrum. All the colors of the visible spectrum fracted to a different angle. are seen, except for certain colors that are absorbed by the gas. -
Spectrum 100 Series User's Guide
MOLECULAR SPECTROSCOPY SPECTRUM 100 SERIES User’s Guide 2 . Spectrum 100 Series User’s Guide Release History Part Number Release Publication Date L1050021 A October 2005 Any comments about the documentation for this product should be addressed to: User Assistance PerkinElmer Ltd Chalfont Road Seer Green Beaconsfield Bucks HP9 2FX United Kingdom Or emailed to: [email protected] Notices The information contained in this document is subject to change without notice. Except as specifically set forth in its terms and conditions of sale, PerkinElmer makes no warranty of any kind with regard to this document, including, but not limited to, the implied warranties of merchantability and fitness for a particular purpose. PerkinElmer shall not be liable for errors contained herein for incidental consequential damages in connection with furnishing, performance or use of this material. Copyright Information This document contains proprietary information that is protected by copyright. All rights are reserved. No part of this publication may be reproduced in any form whatsoever or translated into any language without the prior, written permission of PerkinElmer, Inc. Copyright © 2005 PerkinElmer, Inc. Trademarks Registered names, trademarks, etc. used in this document, even when not specifically marked as such, are protected by law. PerkinElmer is a registered trademark of PerkinElmer, Inc. Spectrum, Spectrum 100, and Spectrum 100N are trademarks of PerkinElmer, Inc. Spectrum 100 Series User’s Guide . 3 Contents Contents............................................................................................... -
Experiment 2 Radiation in the Visible Spectrum Emission Spectra Can Be
Experiment 2 Radiation in the Visible Spectrum Emission spectra can be a unique fingerprint of an atom or molecule. The photon energies and wavelengths are directly related to the allowed quantum energy states of the system. In the following experiments we will examine the radiation given off by sources radiating in the visible region. We will be using a spectrometer produced by Ocean Optics. Light enters the spectrometer via a fiber optic cable. Inside the spectrometer a diffraction grating diffracts the different frequencies onto a CCD. The CCD basically ”counts” the photons according to wavelength. The data is transferred via a usb port to a PC. The Ocean Optics software displays the spectrum as counts versus wavelength. We will examine the spectra given off by the following sources: incandescent light filament, hydrogen, helium, various light emitting diodes and a laser pointer. You will also be given an unknown gas discharge tube and will need to identify the gas via its spectral emissions Pre Lab 1) Obtain a spectrum for hydrogen, mercury, sodium and neon gas emissions. The spectrum must contain an accurate listing of major emission lines (in nm), not simply a color photo of the emission. 2) Make yourself familiar with the manual for the spectrometer and the software. These are available via the following links: http://www.oceanoptics.com/technical/hr4000.pdf http://www.oceanoptics.com/technical/SpectraSuite.pdf These documents are also available on Black Board. 3) How does the Ocean Optics spectrometer work? In your answer list its three main components and describe what each component does. -
240 Ion Trap GC/MS External Ionization User's Guide
Agilent 240 Ion Trap GC/MS External Ionization User’s Guide Agilent Technologies Notices © Agilent Technologies, Inc. 2011 Warranty (June 1987) or DFAR 252.227-7015 (b)(2) (November 1995), as applicable in any No part of this manual may be reproduced The material contained in this docu- technical data. in any form or by any means (including ment is provided “as is,” and is sub- electronic storage and retrieval or transla- ject to being changed, without notice, tion into a foreign language) without prior Safety Notices agreement and written consent from in future editions. Further, to the max- Agilent Technologies, Inc. as governed by imum extent permitted by applicable United States and international copyright law, Agilent disclaims all warranties, CAUTION either express or implied, with regard laws. to this manual and any information A CAUTION notice denotes a Manual Part Number contained herein, including but not hazard. It calls attention to an oper- limited to the implied warranties of ating procedure, practice, or the G3931-90003 merchantability and fitness for a par- like that, if not correctly performed ticular purpose. Agilent shall not be or adhered to, could result in Edition liable for errors or for incidental or damage to the product or loss of First edition, May 2011 consequential damages in connection important data. Do not proceed with the furnishing, use, or perfor- beyond a CAUTION notice until the Printed in USA mance of this document or of any indicated conditions are fully Agilent Technologies, Inc. information contained herein. Should understood and met. 5301 Stevens Creek Boulevard Agilent and the user have a separate Santa Clara, CA 95051 USA written agreement with warranty terms covering the material in this document that conflict with these WARNING terms, the warranty terms in the sep- A WARNING notice denotes a arate agreement shall control. -
Electron Ionization
Chapter 6 Chapter 6 Electron Ionization I. Introduction ......................................................................................................317 II. Ionization Process............................................................................................317 III. Strategy for Data Interpretation......................................................................321 1. Assumptions 2. The Ionization Process IV. Types of Fragmentation Pathways.................................................................328 1. Sigma-Bond Cleavage 2. Homolytic or Radical-Site-Driven Cleavage 3. Heterolytic or Charge-Site-Driven Cleavage 4. Rearrangements A. Hydrogen-Shift Rearrangements B. Hydride-Shift Rearrangements V. Representative Fragmentations (Spectra) of Classes of Compounds.......... 344 1. Hydrocarbons A. Saturated Hydrocarbons 1) Straight-Chain Hydrocarbons 2) Branched Hydrocarbons 3) Cyclic Hydrocarbons B. Unsaturated C. Aromatic 2. Alkyl Halides 3. Oxygen-Containing Compounds A. Aliphatic Alcohols B. Aliphatic Ethers C. Aromatic Alcohols D. Cyclic Ethers E. Ketones and Aldehydes F. Aliphatic Acids and Esters G. Aromatic Acids and Esters 4. Nitrogen-Containing Compounds A. Aliphatic Amines B. Aromatic Compounds Containing Atoms of Nitrogen C. Heterocyclic Nitrogen-Containing Compounds D. Nitro Compounds E. Concluding Remarks on the Mass Spectra of Nitrogen-Containing Compounds 5. Multiple Heteroatoms or Heteroatoms and a Double Bond 6. Trimethylsilyl Derivative 7. Determining the Location of Double Bonds VI. Library -
Modern Mass Spectrometry
Modern Mass Spectrometry MacMillan Group Meeting 2005 Sandra Lee Key References: E. Uggerud, S. Petrie, D. K. Bohme, F. Turecek, D. Schröder, H. Schwarz, D. Plattner, T. Wyttenbach, M. T. Bowers, P. B. Armentrout, S. A. Truger, T. Junker, G. Suizdak, Mark Brönstrup. Topics in Current Chemistry: Modern Mass Spectroscopy, pp. 1-302, 225. Springer-Verlag, Berlin, 2003. Current Topics in Organic Chemistry 2003, 15, 1503-1624 1 The Basics of Mass Spectroscopy ! Purpose Mass spectrometers use the difference in mass-to-charge ratio (m/z) of ionized atoms or molecules to separate them. Therefore, mass spectroscopy allows quantitation of atoms or molecules and provides structural information by the identification of distinctive fragmentation patterns. The general operation of a mass spectrometer is: "1. " create gas-phase ions "2. " separate the ions in space or time based on their mass-to-charge ratio "3. " measure the quantity of ions of each mass-to-charge ratio Ionization sources ! Instrumentation Chemical Ionisation (CI) Atmospheric Pressure CI!(APCI) Electron Impact!(EI) Electrospray Ionization!(ESI) SORTING DETECTION IONIZATION OF IONS OF IONS Fast Atom Bombardment (FAB) Field Desorption/Field Ionisation (FD/FI) Matrix Assisted Laser Desorption gaseous mass ion Ionisation!(MALDI) ion source analyzer transducer Thermospray Ionisation (TI) Analyzers quadrupoles vacuum signal Time-of-Flight (TOF) pump processor magnetic sectors 10-5– 10-8 torr Fourier transform and quadrupole ion traps inlet Detectors mass electron multiplier spectrum Faraday cup Ionization Sources: Classical Methods ! Electron Impact Ionization A beam of electrons passes through a gas-phase sample and collides with neutral analyte molcules (M) to produce a positively charged ion or a fragment ion. -
An Organic Chemist's Guide to Electrospray Mass Spectrometric
molecules Review An Organic Chemist’s Guide to Electrospray Mass Spectrometric Structure Elucidation Arnold Steckel 1 and Gitta Schlosser 2,* 1 Hevesy György PhD School of Chemistry, ELTE Eötvös Loránd University, Pázmány Péter sétány 1/A, 1117 Budapest, Hungary; [email protected] 2 Department of Analytical Chemistry, ELTE Eötvös Loránd University, Pázmány Péter sétány 1/A, 1117 Budapest, Hungary * Correspondence: [email protected] Received: 16 January 2019; Accepted: 8 February 2019; Published: 10 February 2019 Abstract: Tandem mass spectrometry is an important tool for structure elucidation of natural and synthetic organic products. Fragmentation of odd electron ions (OE+) generated by electron ionization (EI) was extensively studied in the last few decades, however there are only a few systematic reviews available concerning the fragmentation of even-electron ions (EE+/EE−) produced by the currently most common ionization techniques, electrospray ionization (ESI) and atmospheric pressure chemical ionization (APCI). This review summarizes the most important features of tandem mass spectra generated by collision-induced dissociation fragmentation and presents didactic examples for the unexperienced users. Keywords: tandem mass spectrometry; MS/MS fragmentation; collision-induced dissociation; CID; ESI; structure elucidation 1. Introduction Electron ionization (EI), a hard ionization technique, is the method of choice for analyses of small (<1000 Da), nonpolar, volatile compounds. As its name implies, the technique involves ionization by electrons with ~70 eV energy. This energy is high enough to yield very reproducible mass spectra with a large number of fragments. However, these spectra frequently lack the radical type molecular ions (M+) due to the high internal energy transferred to the precursors [1]. -
Orbitrap Fusion Tribrid Mass Spectrometer
MASS SPECTROMETRY Product Specifications Thermo Scientific Orbitrap Fusion Tribrid Mass Spectrometer Unmatched analytical performance, revolutionary MS architecture The Thermo Scientific™ Orbitrap Fusion™ mass spectrometer combines the best of quadrupole, Orbitrap, and linear ion trap mass analysis in a revolutionary Thermo Scientific™ Tribrid™ architecture that delivers unprecedented depth of analysis. It enables life scientists working with even the most challenging samples—samples of low abundance, high complexity, or difficult-to-analyze chemical structure—to identify more compounds faster, quantify them more accurately, and elucidate molecular composition more thoroughly. • Tribrid architecture combines quadrupole, followed by ETD or EThCD for glycopeptide linear ion trap, and Orbitrap mass analyzers characterization or HCD followed by CID • Multiple fragmentation techniques—CID, for small-molecule structural analysis. HCD, and optional ETD and EThCD—are available at any stage of MSn, with The ultrahigh resolution of the Orbitrap mass subsequent mass analysis in either the ion analyzer increases certainty of analytical trap or Orbitrap mass analyzer results, enabling molecular-weight • Parallelization of MS and MSn acquisition determination for intact proteins and confident to maximize the amount of high-quality resolution of isobaric species. The unsurpassed data acquired scan rate and resolution of the system are • Next-generation ion sources and ion especially useful when dealing with complex optics increase system ease of operation and robustness and low-abundance samples in proteomics, • Innovative instrument control software metabolomics, glycomics, lipidomics, and makes setup easier, methods more similar applications. powerful, and operation more intuitive The intuitive user interface of the tune editor The Orbitrap Fusion Tribrid MS can perform and method editor makes instrument calibration a wide variety of analyses, from in-depth and method development easier. -
Methods of Ion Generation
Chem. Rev. 2001, 101, 361−375 361 Methods of Ion Generation Marvin L. Vestal PE Biosystems, Framingham, Massachusetts 01701 Received May 24, 2000 Contents I. Introduction 361 II. Atomic Ions 362 A. Thermal Ionization 362 B. Spark Source 362 C. Plasma Sources 362 D. Glow Discharge 362 E. Inductively Coupled Plasma (ICP) 363 III. Molecular Ions from Volatile Samples. 364 A. Electron Ionization (EI) 364 B. Chemical Ionization (CI) 365 C. Photoionization (PI) 367 D. Field Ionization (FI) 367 IV. Molecular Ions from Nonvolatile Samples 367 Marvin L. Vestal received his B.S. and M.S. degrees, 1958 and 1960, A. Spray Techniques 367 respectively, in Engineering Sciences from Purdue Univesity, Layfayette, IN. In 1975 he received his Ph.D. degree in Chemical Physics from the B. Electrospray 367 University of Utah, Salt Lake City. From 1958 to 1960 he was a Scientist C. Desorption from Surfaces 369 at Johnston Laboratories, Inc., in Layfayette, IN. From 1960 to 1967 he D. High-Energy Particle Impact 369 became Senior Scientist at Johnston Laboratories, Inc., in Baltimore, MD. E. Low-Energy Particle Impact 370 From 1960 to 1962 he was a Graduate Student in the Department of Physics at John Hopkins University. From 1967 to 1970 he was Vice F. Low-Energy Impact with Liquid Surfaces 371 President at Scientific Research Instruments, Corp. in Baltimore, MD. From G. Flow FAB 371 1970 to 1975 he was a Graduate Student and Research Instructor at the H. Laser Ionization−MALDI 371 University of Utah, Salt Lake City. From 1976 to 1981 he became I. -
Mass Spectrometer
CLASSICAL CONCEPT REVIEW 6 Mass Spectrometer One of several devices currently used to measure the charge-to-mass ratio q m of charged atoms and molecules is the mass spectrometer. The mass spectrometer is used to find the charge-to-mass ratio of ions of known charge by measuring> the radius of their circular orbits in a uniform magnetic field. Equation 3-2 gives the radius of R for the circular orbit of a particle of mass m and charge q moving with speed u in a magnetic field B that is perpendicular to the velocity of the particle. Figure MS-1 shows a simple schematic drawing of a mass spectrometer. Ions from an ion source are accelerated by an electric field and enter a uniform magnetic field produced by an electromagnet. If the ions start from rest and move through a poten- tial DV, their kinetic energy when they enter the magnetic field equals their loss in potential energy, qDV: B out 1 mu2 = qDV MS-1 2 R The ions move in a semicircle of radius R given by Equation 3-2 and exit through a P P narrow aperture into an ion detector (or, in earlier times, a photographic plate) at point 1 u 2 P2, a distance 2R from the point where they enter the magnet. The speed u can be eliminated from Equations 3-2 and MS-1 to find q m in terms of DV, B, and R. The + + q result is Source > – + q 2DV ∆V = 2 2 MS-2 m B R MS-1 Schematic drawing of a mass spectrometer. -
Development and Applications of a Real-Time Magnetic Electron
Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 12-13-2017 Development and Applications of a Real-time Magnetic Electron Energy Spectrometer for Use with Medical Linear Accelerators Paul Ethan Maggi Louisiana State University and Agricultural and Mechanical College, [email protected] Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Part of the Health and Medical Physics Commons Recommended Citation Maggi, Paul Ethan, "Development and Applications of a Real-time Magnetic Electron Energy Spectrometer for Use with Medical Linear Accelerators" (2017). LSU Doctoral Dissertations. 4180. https://digitalcommons.lsu.edu/gradschool_dissertations/4180 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. DEVELOPMENT AND APPLICATIONS OF A REAL-TIME MAGNETIC ELECTRON ENERGY SPECTROMETER FOR USE WITH MEDICAL LINEAR ACCELERATORS A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor in Philosophy in The Department of Physics and Astronomy by Paul Ethan Maggi B.S., California Polytechnic State University, San Luis Obispo, 2012 May 2018 ACKNOWLEDGEMENTS I thank Kenneth Hogstrom for providing the initial idea for this project, as well as partial funding support. I thank Edison Liang of Rice University for providing the magnet block and measurements of the magnetic field. I thank my adviser, Kip Matthews for his advice, guidance, and patience during my tenure at LSU.