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Comparative Analysis and Implications of the Chloroplast Genomes of Three Thistles (Carduus L., Asteraceae)
Comparative analysis and implications of the chloroplast genomes of three thistles (Carduus L., Asteraceae) Joonhyung Jung1,*, Hoang Dang Khoa Do1,2,*, JongYoung Hyun1, Changkyun Kim1 and Joo-Hwan Kim1 1 Department of Life Science, Gachon University, Seongnam, Gyeonggi, Korea 2 Nguyen Tat Thanh Hi-Tech Institute, Nguyen Tat Thanh University, Ho Chi Minh City, Vietnam * These authors contributed equally to this work. ABSTRACT Background. Carduus, commonly known as plumeless thistles, is a genus in the Asteraceae family that exhibits both medicinal value and invasive tendencies. However, the genomic data of Carduus (i.e., complete chloroplast genomes) have not been sequenced. Methods. We sequenced and assembled the chloroplast genome (cpDNA) sequences of three Carduus species using the Illumina Miseq sequencing system and Geneious Prime. Phylogenetic relationships between Carduus and related taxa were reconstructed using Maximum Likelihood and Bayesian Inference analyses. In addition, we used a single nucleotide polymorphism (SNP) in the protein coding region of the matK gene to develop molecular markers to distinguish C. crispus from C. acanthoides and C. tenuiflorus. Results. The cpDNA sequences of C. crispus, C. acanthoides, and C. tenuiflorus ranged from 152,342 bp to 152,617 bp in length. Comparative genomic analysis revealed high conservation in terms of gene content (including 80 protein-coding, 30 tRNA, and four rRNA genes) and gene order within the three focal species and members of subfamily Carduoideae. Despite their high similarity, the three species differed with respect to the number and content of repeats in the chloroplast genome. Additionally, eight Submitted 28 February 2020 hotspot regions, including psbI-trnS_GCU, trnE_UUC-rpoB, trnR_UCU-trnG_UCC, Accepted 11 December 2020 Published 14 January 2021 psbC-trnS_UGA, trnT_UGU-trnL_UAA, psbT-psbN, petD-rpoA, and rpl16-rps3, were identified in the study species. -
Thistles of Colorado
Thistles of Colorado About This Guide Identification and Management Guide Many individuals, organizations and agencies from throughout the state (acknowledgements on inside back cover) contributed ideas, content, photos, plant descriptions, management information and printing support toward the completion of this guide. Mountain thistle (Cirsium scopulorum) growing above timberline Casey Cisneros, Tim D’Amato and the Larimer County Department of Natural Resources Weed District collected, compiled and edited information, content and photos for this guide. Produced by the We welcome your comments, corrections, suggestions, and high Larimer County quality photos. If you would like to contribute to future editions, please contact the Larimer County Weed District at 970-498- Weed District 5769 or email [email protected] or [email protected]. Front cover photo of Cirsium eatonii var. hesperium by Janis Huggins Partners in Land Stewardship 2nd Edition 1 2 Table of Contents Introduction 4 Introduction Native Thistles (Pages 6-20) Barneyby’s Thistle (Cirsium barnebyi) 6 Cainville Thistle (Cirsium clacareum) 6 Native thistles are dispersed broadly Eaton’s Thistle (Cirsium eatonii) 8 across many Colorado ecosystems. Individual species occupy niches from Elk or Meadow Thistle (Cirsium scariosum) 8 3,500 feet to above timberline. These Flodman’s Thistle (Cirsium flodmanii) 10 plants are valuable to pollinators, seed Fringed or Fish Lake Thistle (Cirsium 10 feeders, browsing wildlife and to the centaureae or C. clavatum var. beauty and diversity of our native plant americanum) communities. Some non-native species Mountain Thistle (Cirsium scopulorum) 12 have become an invasive threat to New Mexico Thistle (Cirsium 12 agriculture and natural areas. For this reason, native and non-native thistles neomexicanum) alike are often pulled, mowed, clipped or Ousterhout’s or Aspen Thistle (Cirsium 14 sprayed indiscriminately. -
Italian Thistle (Carduus Pycnocephalus)
Thistles: Identification and Management Rebecca Ozeran 1 May 2018 Common thistles in the San Joaquin Valley Carduus Centaurea Cirsium Silybum Onopordum Italian thistle Yellow starthistle Bull thistle (Blessed) milkthistle Scotch thistle Tocalote Canada thistle (Malta starthistle) All of these species are found at least one of Fresno, Kern, Kings, Madera, or Tulare Counties Identification • Many species start as a basal rosette in fall • Mature plants can have dense & bushy or tall & stemmy appearance • Purple/pink or yellow-flowered Identification • Why does thistle species matter? • Varying levels of risk to animals • Varying competition with forage • Varying susceptibility to control options Identification – 1. Italian thistle • Carduus pycnocephalus • narrow, spiky flower heads • winged, spiny stems branching above the base • found in Fresno, Kern, Madera, Tulare Identification – 2. Centaurea thistles • YELLOW STARTHISTLE (C. solstitialis) • long, yellow/white spines on phyllaries • can get a bushy structure • found in Fresno, Kern, Madera, Tulare • TOCALOTE (MALTA STARTHISTLE, C. melitensis) • stouter flower heads and shorter, redder spines on phyllaries • found in all 5 counties Identification – 3. Cirsium thistles • Canada thistle (C. arvense) • smooth stems, non-spiny flowerheads • flowers Jun-Oct • found in Fresno, Kern, Tulare • Bull thistle (C. vulgare) • large spiky looking flowerheads • lots of branching, dense plant • flowers Jun-Oct • found in all 5 counties Identification – 4. Blessed milk thistle • Silybum marianum • Distinct, -
The Case of Centaurea Stoebe (Spotted Knapweed)
Endophytic fungi as a biodiversity hotspot: the case of Centaurea stoebe (spotted knapweed) Alexey Shipunov Department of Forest Resources University of Idaho Spotted knapweed Spotted knapweed (Centaurea stoebe L., also known as C. maculosa, C. micrantha, C. biebersteinii) is a noxious, invasive plant which was introduced into North America from Eurasia in 1890s. Plant fungal endophytes • Grow inside plant, but do not cause any symptoms • Cryptic symbionts, inhabiting all plants • Play lots of different roles, include host tolerance to stressful conditions, plant defense, plant growth, and plant community biodiversity • One example of the economic importance of endophytes is taxol, well-known anticancer drug, which is not a product of Taxus brevifolia (yew) tree, but of its endophyte Taxomyces andreana Anamorphs and teleomorphs More than 1/3 of fungi do not normally express any sexual characters. They are anamorphs. Sometimes, some anamorphic fungi develop into sexual teleomorphs which have “more morphology” and can be properly classified. Before molecular era, all anamorphic fungi have been treated as Alternaria (anamorph, above), “Deuteromycota”. and Lewia (teleomorph, below) Most of knapweed endophytes are are the same organism. anamorphic ascomycetes. BLAST search usually reveals mixed lists of ana- and teleomorph names Pleomorphic fungi (with variable anamorph/teleomorph relationships) are one of the most painful problem for fungal taxonomy. The weakness of morphology From Jeewon et al. (2003), and Hu et al. (2007) Pestalotiopsis example: morphology chosen as the only identification tool leads to highly tangled molecular tree. “Identify, then sequence” does not work for novel isolates. Thus, the identification of fungi depends on either high level of expertise, or on proper barcoding. -
Slender Thistles LC0229 Department of Primary Industries ISSN 1329-833X
Updated: August 2007 Slender Thistles LC0229 Department of Primary Industries ISSN 1329-833X Common and scientific names in colour. All seeds have a group of plumes (the pappus) about three times as long as the seed for wind dispersal. Slender thistle, shore thistle Roots - branched, slender or stout tap root. Carduus pycnocephalus L. (slender thistle) Carduus tenuiflorus Curt. (winged slender thistle) Family Asteraceae (daisy family) Origin and distribution Slender thistles are native to Europe and North Africa. The range of C. pycnocephalus extends to Asia Minor and Pakistan while that of C. tenuiflorus extends northwards to Britain and Scandinavia. They are a problem in many areas of the world. Both species were present in Victoria during the 1880s and now occur throughout much of the State. Slender thistles are troublesome weeds in pastures and wastelands, favouring areas of winter rainfall and soils of moderate to high fertility. The two species often occur together in mixed populations. Description Erect annual herbs, commonly 60 to 100 cm high but up to 2m, reproducing by seed. Seed germinates in the 6 weeks Figure 1. Slender thistle, Carduus tenuiflorus. following the autumn break. Seedlings develop into rosettes and remain in the rosette stage over winter. Flowering stems are produced in early spring and flowering continues from September to December. Plants die in early summer after flowering, but dead stems can remain standing for months. Stems - flowering stems are single or multiple from the base, branched, strongly ribbed and slightly woolly. Spiny wings occur along most of the length of flowering stems. Leaves - rosette leaves 15 to 25 cm long, stalked and Figure 2. -
Literature Cited
Literature Cited Robert W. Kiger, Editor This is a consolidated list of all works cited in volumes 19, 20, and 21, whether as selected references, in text, or in nomenclatural contexts. In citations of articles, both here and in the taxonomic treatments, and also in nomenclatural citations, the titles of serials are rendered in the forms recommended in G. D. R. Bridson and E. R. Smith (1991). When those forms are abbre- viated, as most are, cross references to the corresponding full serial titles are interpolated here alphabetically by abbreviated form. In nomenclatural citations (only), book titles are rendered in the abbreviated forms recommended in F. A. Stafleu and R. S. Cowan (1976–1988) and F. A. Stafleu and E. A. Mennega (1992+). Here, those abbreviated forms are indicated parenthetically following the full citations of the corresponding works, and cross references to the full citations are interpolated in the list alphabetically by abbreviated form. Two or more works published in the same year by the same author or group of coauthors will be distinguished uniquely and consistently throughout all volumes of Flora of North America by lower-case letters (b, c, d, ...) suffixed to the date for the second and subsequent works in the set. The suffixes are assigned in order of editorial encounter and do not reflect chronological sequence of publication. The first work by any particular author or group from any given year carries the implicit date suffix “a”; thus, the sequence of explicit suffixes begins with “b”. Works missing from any suffixed sequence here are ones cited elsewhere in the Flora that are not pertinent in these volumes. -
Checklist of the Vascular Plants of Redwood National Park
Humboldt State University Digital Commons @ Humboldt State University Botanical Studies Open Educational Resources and Data 9-17-2018 Checklist of the Vascular Plants of Redwood National Park James P. Smith Jr Humboldt State University, [email protected] Follow this and additional works at: https://digitalcommons.humboldt.edu/botany_jps Part of the Botany Commons Recommended Citation Smith, James P. Jr, "Checklist of the Vascular Plants of Redwood National Park" (2018). Botanical Studies. 85. https://digitalcommons.humboldt.edu/botany_jps/85 This Flora of Northwest California-Checklists of Local Sites is brought to you for free and open access by the Open Educational Resources and Data at Digital Commons @ Humboldt State University. It has been accepted for inclusion in Botanical Studies by an authorized administrator of Digital Commons @ Humboldt State University. For more information, please contact [email protected]. A CHECKLIST OF THE VASCULAR PLANTS OF THE REDWOOD NATIONAL & STATE PARKS James P. Smith, Jr. Professor Emeritus of Botany Department of Biological Sciences Humboldt State Univerity Arcata, California 14 September 2018 The Redwood National and State Parks are located in Del Norte and Humboldt counties in coastal northwestern California. The national park was F E R N S established in 1968. In 1994, a cooperative agreement with the California Department of Parks and Recreation added Del Norte Coast, Prairie Creek, Athyriaceae – Lady Fern Family and Jedediah Smith Redwoods state parks to form a single administrative Athyrium filix-femina var. cyclosporum • northwestern lady fern unit. Together they comprise about 133,000 acres (540 km2), including 37 miles of coast line. Almost half of the remaining old growth redwood forests Blechnaceae – Deer Fern Family are protected in these four parks. -
Coleoptera Chrysomelidae) of Sicily: Recent Records and Updated Checklist
DOI: 10.1478/AAPP.982A7 AAPP j Atti della Accademia Peloritana dei Pericolanti Classe di Scienze Fisiche, Matematiche e Naturali ISSN 1825-1242 Vol. 98, No. 2, A7 (2020) THE CASSIDINAE AND CRYPTOCEPHALINI (COLEOPTERA CHRYSOMELIDAE) OF SICILY: RECENT RECORDS AND UPDATED CHECKLIST COSIMO BAVIERA a∗ AND DAVIDE SASSI b ABSTRACT. This paper compiles an updated checklist of the Sicilian Cassidinae and Cryptocephalini species (Coleoptera: Chrysomelidae, Cassidinae and Cryptocephalinae) starting from a critical bibliographic screening and adding new material, mainly collected by the first author in the last few decades. A total of 61 species is reported, withnew data for many rarely collected taxa. The provided data expand the known distribution of many uncommon species in Sicily. Two species are recorded for the first time: Cassida inopinata Sassi and Borowiec, 2006 and Cryptocephalus (Cryptocephalus) bimaculatus Fabricius, 1781 and two uncertain presences are confirmed: Cassida deflorata Suffrian, 1844 and Cassida nobilis Linné, 1758. The presence of other sixteen species is considered questionable and needs further confirmation. 1. Introduction Leaf beetles are all phytophagous Coleoptera. They are usually of a rather stout build, with a rounded or oval shape, often brightly coloured or with metallic hues. Worldwide some 32500 species in 2114 genera of Chrysomelidae have been described (Slipi´ nski´ et al. 2011), the majority of which occur in the tropics as is the case with numerous other Coleoptera families. Currently, the leaf beetle subfamily Cassidinae comprises the tortoise beetles (Cassidinae s. str.) and the hispine beetles (Hispinae s. str.) (Borowiec 1995; Hsiao and Windsor 1999; Chaboo 2007). So far, the Cassidinae list about 6300 described species within more than 340 genera, being the second most speciose subfamily of leaf beetles (Borowiec and Swi˛etoja´ nska´ 2014). -
Plant List for Web Page
Stanford Working Plant List 1/15/08 Common name Botanical name Family origin big-leaf maple Acer macrophyllum Aceraceae native box elder Acer negundo var. californicum Aceraceae native common water plantain Alisma plantago-aquatica Alismataceae native upright burhead Echinodorus berteroi Alismataceae native prostrate amaranth Amaranthus blitoides Amaranthaceae native California amaranth Amaranthus californicus Amaranthaceae native Powell's amaranth Amaranthus powellii Amaranthaceae native western poison oak Toxicodendron diversilobum Anacardiaceae native wood angelica Angelica tomentosa Apiaceae native wild celery Apiastrum angustifolium Apiaceae native cutleaf water parsnip Berula erecta Apiaceae native bowlesia Bowlesia incana Apiaceae native rattlesnake weed Daucus pusillus Apiaceae native Jepson's eryngo Eryngium aristulatum var. aristulatum Apiaceae native coyote thistle Eryngium vaseyi Apiaceae native cow parsnip Heracleum lanatum Apiaceae native floating marsh pennywort Hydrocotyle ranunculoides Apiaceae native caraway-leaved lomatium Lomatium caruifolium var. caruifolium Apiaceae native woolly-fruited lomatium Lomatium dasycarpum dasycarpum Apiaceae native large-fruited lomatium Lomatium macrocarpum Apiaceae native common lomatium Lomatium utriculatum Apiaceae native Pacific oenanthe Oenanthe sarmentosa Apiaceae native 1 Stanford Working Plant List 1/15/08 wood sweet cicely Osmorhiza berteroi Apiaceae native mountain sweet cicely Osmorhiza chilensis Apiaceae native Gairdner's yampah (List 4) Perideridia gairdneri gairdneri Apiaceae -
Fort Ord Natural Reserve Plant List
UCSC Fort Ord Natural Reserve Plants Below is the most recently updated plant list for UCSC Fort Ord Natural Reserve. * non-native taxon ? presence in question Listed Species Information: CNPS Listed - as designated by the California Rare Plant Ranks (formerly known as CNPS Lists). More information at http://www.cnps.org/cnps/rareplants/ranking.php Cal IPC Listed - an inventory that categorizes exotic and invasive plants as High, Moderate, or Limited, reflecting the level of each species' negative ecological impact in California. More information at http://www.cal-ipc.org More information about Federal and State threatened and endangered species listings can be found at https://www.fws.gov/endangered/ (US) and http://www.dfg.ca.gov/wildlife/nongame/ t_e_spp/ (CA). FAMILY NAME SCIENTIFIC NAME COMMON NAME LISTED Ferns AZOLLACEAE - Mosquito Fern American water fern, mosquito fern, Family Azolla filiculoides ? Mosquito fern, Pacific mosquitofern DENNSTAEDTIACEAE - Bracken Hairy brackenfern, Western bracken Family Pteridium aquilinum var. pubescens fern DRYOPTERIDACEAE - Shield or California wood fern, Coastal wood wood fern family Dryopteris arguta fern, Shield fern Common horsetail rush, Common horsetail, field horsetail, Field EQUISETACEAE - Horsetail Family Equisetum arvense horsetail Equisetum telmateia ssp. braunii Giant horse tail, Giant horsetail Pentagramma triangularis ssp. PTERIDACEAE - Brake Family triangularis Gold back fern Gymnosperms CUPRESSACEAE - Cypress Family Hesperocyparis macrocarpa Monterey cypress CNPS - 1B.2, Cal IPC -
Thistle Identification
Oklahoma Cooperative Extension Service PSS-2776 Thistle Identification January 2021 Laura Goodman Extension Rangeland Ecology Specialist Oklahoma Cooperative Extension Fact Sheets are also available on our website at: Tom Royer extension.okstate.edu Extension Entomologist Alex Rocateli can often develop. The current Thistle Law includes three of Forage Systems Extension Specialist the five species. However, all introduced thistles should be considered invasive. Oklahoma’s Noxious Weed Law, first enacted in 1994 in four counties in northeastern Oklahoma (Code 35:30-36-13) Thistles Listed in the Noxious Weed Law was amended in 1995, 1998 and 1999. The current law de- Canada thistle (Cirsium arvense) is an introduced peren- clares musk, scotch and Canada thistles to be noxious weeds nial thistle widely distributed in Nebraska and other northern and public nuisances in all counties of the state. states. At present, it does not appear to be a major threat in There are about a dozen purple-flowered spiny thistle Oklahoma. Several plants were collected in the panhandle species that occur in Oklahoma. Oklahoma’s Noxious Weed counties in the 1950s and several more in Bryan County in Law can raise concern among landowners if they do not the 1970s, but currently, no infestations are known to exist in know which thistles on their land they are required to control. the state. In a 1998 survey of noxious weeds in Meade County The purpose of this publication is to describe the introduced Kansas, north of Beaver County, Oklahoma, reported a small thistles, selected common native thistles and provide infor- infestation of Canada thistle. -
Spiranthes Diluvialis) and for Designated Weeds
2000 Survey of BLM-Managed Public Lands in Southwestern Wyoming for Ute Ladies Tresses (Spiranthes diluvialis) and for Designated Weeds Report Prepared for the BLM Rock Springs Field Office by George P. Jones, Wyoming Natural Diversity Database (University of Wyoming) in partial fulfillment of Cooperative Agreement K910A970018, Task Order TO-13 April 2001 TABLE OF CONTENTS ABSTRACT.........................................................................................................................i BACKGROUND................................................................................................................. 1 METHODS.......................................................................................................................... 1 RESULTS............................................................................................................................ 2 SPIRANTHES DILUVALIS .................................................................................. 2 WEEDS ................................................................................................................... 2 DISCUSSION ..................................................................................................................... 2 REFERENCES.................................................................................................................... 3 APPENDIX 1: DESCRIPTIONS OF STREAM SEGMENTS .........................................8 APPENDIX 2: ABUNDANCE OF THE DESIGNATED WEEDS IN EACH STREAM SEGMENT........................................................................................................................18