Characterization of an Improved Thermal Ionization Cavity Source for Mass Spectrometry
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Electron Ionization
Chapter 6 Chapter 6 Electron Ionization I. Introduction ......................................................................................................317 II. Ionization Process............................................................................................317 III. Strategy for Data Interpretation......................................................................321 1. Assumptions 2. The Ionization Process IV. Types of Fragmentation Pathways.................................................................328 1. Sigma-Bond Cleavage 2. Homolytic or Radical-Site-Driven Cleavage 3. Heterolytic or Charge-Site-Driven Cleavage 4. Rearrangements A. Hydrogen-Shift Rearrangements B. Hydride-Shift Rearrangements V. Representative Fragmentations (Spectra) of Classes of Compounds.......... 344 1. Hydrocarbons A. Saturated Hydrocarbons 1) Straight-Chain Hydrocarbons 2) Branched Hydrocarbons 3) Cyclic Hydrocarbons B. Unsaturated C. Aromatic 2. Alkyl Halides 3. Oxygen-Containing Compounds A. Aliphatic Alcohols B. Aliphatic Ethers C. Aromatic Alcohols D. Cyclic Ethers E. Ketones and Aldehydes F. Aliphatic Acids and Esters G. Aromatic Acids and Esters 4. Nitrogen-Containing Compounds A. Aliphatic Amines B. Aromatic Compounds Containing Atoms of Nitrogen C. Heterocyclic Nitrogen-Containing Compounds D. Nitro Compounds E. Concluding Remarks on the Mass Spectra of Nitrogen-Containing Compounds 5. Multiple Heteroatoms or Heteroatoms and a Double Bond 6. Trimethylsilyl Derivative 7. Determining the Location of Double Bonds VI. Library -
Modern Mass Spectrometry
Modern Mass Spectrometry MacMillan Group Meeting 2005 Sandra Lee Key References: E. Uggerud, S. Petrie, D. K. Bohme, F. Turecek, D. Schröder, H. Schwarz, D. Plattner, T. Wyttenbach, M. T. Bowers, P. B. Armentrout, S. A. Truger, T. Junker, G. Suizdak, Mark Brönstrup. Topics in Current Chemistry: Modern Mass Spectroscopy, pp. 1-302, 225. Springer-Verlag, Berlin, 2003. Current Topics in Organic Chemistry 2003, 15, 1503-1624 1 The Basics of Mass Spectroscopy ! Purpose Mass spectrometers use the difference in mass-to-charge ratio (m/z) of ionized atoms or molecules to separate them. Therefore, mass spectroscopy allows quantitation of atoms or molecules and provides structural information by the identification of distinctive fragmentation patterns. The general operation of a mass spectrometer is: "1. " create gas-phase ions "2. " separate the ions in space or time based on their mass-to-charge ratio "3. " measure the quantity of ions of each mass-to-charge ratio Ionization sources ! Instrumentation Chemical Ionisation (CI) Atmospheric Pressure CI!(APCI) Electron Impact!(EI) Electrospray Ionization!(ESI) SORTING DETECTION IONIZATION OF IONS OF IONS Fast Atom Bombardment (FAB) Field Desorption/Field Ionisation (FD/FI) Matrix Assisted Laser Desorption gaseous mass ion Ionisation!(MALDI) ion source analyzer transducer Thermospray Ionisation (TI) Analyzers quadrupoles vacuum signal Time-of-Flight (TOF) pump processor magnetic sectors 10-5– 10-8 torr Fourier transform and quadrupole ion traps inlet Detectors mass electron multiplier spectrum Faraday cup Ionization Sources: Classical Methods ! Electron Impact Ionization A beam of electrons passes through a gas-phase sample and collides with neutral analyte molcules (M) to produce a positively charged ion or a fragment ion. -
Ion-To-Neutral Ratios and Thermal Proton Transfer in Matrix-Assisted Laser Desorption/Ionization
B American Society for Mass Spectrometry, 2015 J. Am. Soc. Mass Spectrom. (2015) 26:1242Y1251 DOI: 10.1007/s13361-015-1112-3 RESEARCH ARTICLE Ion-to-Neutral Ratios and Thermal Proton Transfer in Matrix-Assisted Laser Desorption/Ionization I-Chung Lu,1 Kuan Yu Chu,1,2 Chih-Yuan Lin,1 Shang-Yun Wu,1 Yuri A. Dyakov,1 Jien-Lian Chen,1 Angus Gray-Weale,3 Yuan-Tseh Lee,1,2 Chi-Kung Ni1,4 1Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei, 10617, Taiwan 2Department of Chemistry, National Taiwan University, Taipei, 10617, Taiwan 3School of Chemistry, University of Melbourne, Melbourne, VIC 3010, Australia 4Department of Chemistry, National Tsing Hua University, Hsinchu, 30013, Taiwan Abstract. The ion-to-neutral ratios of four commonly used solid matrices, α-cyano-4- hydroxycinnamic acid (CHCA), 2,5-dihydroxybenzoic acid (2,5-DHB), sinapinic acid (SA), and ferulic acid (FA) in matrix-assisted laser desorption/ionization (MALDI) at 355 nm are reported. Ions are measured using a time-of-flight mass spectrometer combined with a time-sliced ion imaging detector. Neutrals are measured using a rotatable quadrupole mass spectrometer. The ion-to-neutral ratios of CHCA are three orders of magnitude larger than those of the other matrices at the same laser fluence. The ion-to-neutral ratios predicted using the thermal proton transfer model are similar to the experimental measurements, indicating that thermal proton transfer reactions play a major role in generating ions in ultraviolet-MALDI. Keywords: MALDI, Ionization mechanism, Thermal proton transfer, Ion-to-neutral ratio Received: 25 August 2014/Revised: 15 February 2015/Accepted: 16 February 2015/Published Online: 8 April 2015 Introduction in solid state UV-MALDI. -
An Organic Chemist's Guide to Electrospray Mass Spectrometric
molecules Review An Organic Chemist’s Guide to Electrospray Mass Spectrometric Structure Elucidation Arnold Steckel 1 and Gitta Schlosser 2,* 1 Hevesy György PhD School of Chemistry, ELTE Eötvös Loránd University, Pázmány Péter sétány 1/A, 1117 Budapest, Hungary; [email protected] 2 Department of Analytical Chemistry, ELTE Eötvös Loránd University, Pázmány Péter sétány 1/A, 1117 Budapest, Hungary * Correspondence: [email protected] Received: 16 January 2019; Accepted: 8 February 2019; Published: 10 February 2019 Abstract: Tandem mass spectrometry is an important tool for structure elucidation of natural and synthetic organic products. Fragmentation of odd electron ions (OE+) generated by electron ionization (EI) was extensively studied in the last few decades, however there are only a few systematic reviews available concerning the fragmentation of even-electron ions (EE+/EE−) produced by the currently most common ionization techniques, electrospray ionization (ESI) and atmospheric pressure chemical ionization (APCI). This review summarizes the most important features of tandem mass spectra generated by collision-induced dissociation fragmentation and presents didactic examples for the unexperienced users. Keywords: tandem mass spectrometry; MS/MS fragmentation; collision-induced dissociation; CID; ESI; structure elucidation 1. Introduction Electron ionization (EI), a hard ionization technique, is the method of choice for analyses of small (<1000 Da), nonpolar, volatile compounds. As its name implies, the technique involves ionization by electrons with ~70 eV energy. This energy is high enough to yield very reproducible mass spectra with a large number of fragments. However, these spectra frequently lack the radical type molecular ions (M+) due to the high internal energy transferred to the precursors [1]. -
Itwg Guideline Thermal Ionisation Mass Spectrometry (Tims) Executive Summary
NUCLEAR FORENSICS INTERNATIONAL TECHNICAL WORKING GROUP ITWG GUIDELINE THERMAL IONISATION MASS SPECTROMETRY (TIMS) EXECUTIVE SUMMARY Thermal Ionisation Mass Spectrometry (TIMS) is used for isotopic composition measurement of elements having relatively low ionisation potentials (e.g. Sr, Pb, actinides and rare earth elements). Also the concentration of an element can be determined by TIMS using the isotope dilution technique by adding to the sample a known amount of a “spike” [1]. TIMS is a single element analysis technique, thus it is recommended to separate all other elements from the sample before the measurement as they may cause mass interferences or affect the ionisation behaviour of the element of interest [2]. This document was designed and printed at Lawrence Livermore National Laboratory in 2017 with the permission of the Nuclear Forensics International Technical Working Group (ITWG). ITWG Guidelines are intended as consensus-driven best-practices documents. These documents are general rather than prescriptive, and they are not intended to replace any specific laboratory operating procedures. 1. INTRODUCTION The filament configuration in the ion source can be either single, double, or triple filament. In the single In TIMS, a liquid sample (typically in the diluted nitric acid filament configuration, the same filament serves both media) is deposited on a metal ribbon (called a filament for evaporation and ionisation. In the double and triple made of rhenium, tantalum, or tungsten) and dried. filament configurations, the evaporation of the sample The filament is then heated in the vacuum of the mass and the ionisation take place in separate filaments (Fig. spectrometer, causing atoms in the sample to evaporate 2). -
Methods of Ion Generation
Chem. Rev. 2001, 101, 361−375 361 Methods of Ion Generation Marvin L. Vestal PE Biosystems, Framingham, Massachusetts 01701 Received May 24, 2000 Contents I. Introduction 361 II. Atomic Ions 362 A. Thermal Ionization 362 B. Spark Source 362 C. Plasma Sources 362 D. Glow Discharge 362 E. Inductively Coupled Plasma (ICP) 363 III. Molecular Ions from Volatile Samples. 364 A. Electron Ionization (EI) 364 B. Chemical Ionization (CI) 365 C. Photoionization (PI) 367 D. Field Ionization (FI) 367 IV. Molecular Ions from Nonvolatile Samples 367 Marvin L. Vestal received his B.S. and M.S. degrees, 1958 and 1960, A. Spray Techniques 367 respectively, in Engineering Sciences from Purdue Univesity, Layfayette, IN. In 1975 he received his Ph.D. degree in Chemical Physics from the B. Electrospray 367 University of Utah, Salt Lake City. From 1958 to 1960 he was a Scientist C. Desorption from Surfaces 369 at Johnston Laboratories, Inc., in Layfayette, IN. From 1960 to 1967 he D. High-Energy Particle Impact 369 became Senior Scientist at Johnston Laboratories, Inc., in Baltimore, MD. E. Low-Energy Particle Impact 370 From 1960 to 1962 he was a Graduate Student in the Department of Physics at John Hopkins University. From 1967 to 1970 he was Vice F. Low-Energy Impact with Liquid Surfaces 371 President at Scientific Research Instruments, Corp. in Baltimore, MD. From G. Flow FAB 371 1970 to 1975 he was a Graduate Student and Research Instructor at the H. Laser Ionization−MALDI 371 University of Utah, Salt Lake City. From 1976 to 1981 he became I. -
How the Saha Ionization Equation Was Discovered
How the Saha Ionization Equation Was Discovered Arnab Rai Choudhuri Department of Physics, Indian Institute of Science, Bangalore – 560012 Introduction Most youngsters aspiring for a career in physics research would be learning the basic research tools under the guidance of a supervisor at the age of 26. It was at this tender age of 26 that Meghnad Saha, who was working at Calcutta University far away from the world’s major centres of physics research and who never had a formal training from any research supervisor, formulated the celebrated Saha ionization equation and revolutionized astrophysics by applying it to solve some long-standing astrophysical problems. The Saha ionization equation is a standard topic in statistical mechanics and is covered in many well-known textbooks of thermodynamics and statistical mechanics [1–3]. Professional physicists are expected to be familiar with it and to know how it can be derived from the fundamental principles of statistical mechanics. But most professional physicists probably would not know the exact nature of Saha’s contributions in the field. Was he the first person who derived and arrived at this equation? It may come as a surprise to many to know that Saha did not derive the equation named after him! He was not even the first person to write down this equation! The equation now called the Saha ionization equation appeared in at least two papers (by J. Eggert [4] and by F.A. Lindemann [5]) published before the first paper by Saha on this subject. The story of how the theory of thermal ionization came into being is full of many dramatic twists and turns. -
C7895 Mass Spectrometry of Biomolecules Schedule of Lectures
C7895 Mass Spectrometry of Biomolecules Schedule of lectures For schedule, please see a separate file with the course outline. Jan Preisler Consulting The last lecture. Please contact me in advance to make an appointment. Chemistry Dept. 312A14, tel.: 54949 6629, [email protected] This material is just an outline; students are advised to print this outline and write down notes durin the lectures. The material will be updated during The course is focused on mass spectrometry of biomolecules, i.e. ionization the semester. techniques MALDI and ESI, modern mass analyzers, such as time-of-flight MS or ion traps and bioanalytical applications. However, the course covers much broader area, including inorganic ionization techniques, virtually all Supporting study material: types of mass analyzers and hardware in mass spectrometry. • J. Gross, Mass Spectrometry, 3rd ed. Springer-Verlag, 2017 • J. Greaves, J. Roboz: Mass Spectrometry for the Novice, CRC Press, 2013 • Edmond de Hoffmann, Vincent Stroobant: Mass Spectrometry: Principles and Applications, 3rd Edition, John Wiley & Sons, 2007 Mass spectrometry of biomolecules 2018 1 Mass spectrometry of biomolecules 2018 2 1 2 Content I. Introduction 1 II. Ionization methods and sample introduction III. Mass analyzers IV. Biological applications of MS V. Example problems Introduction to Mass spectrometry. Brief History of MS. A Survey of Methods and Instrumentation. Basic Concepts in MS: Resolution, Sensitivity. Isotope patterns of organic molecules. Ionization Techniques and Sample Introductin. Electron Impact Mass spectrometry of biomolecules 2018 3 Ionization (EI). Chemical Ionization (CI) 3 4 I. Introduction Study Material • Information sources about mass spectrometry Lecture notes • Brief history of mass spectrometry, a survey of methods and Advice: please take notes, but do not copy the slides; the English slides will instrumentation be provided at the end of the semester. -
1 Introduction of Mass Spectrometry and Ambient Ionization Techniques
1 1 Introduction of Mass Spectrometry and Ambient Ionization Techniques Yiyang Dong, Jiahui Liu, and Tianyang Guo College of Life Science & Technology, Beijing University of Chemical Technology, No. 15 Beisanhuan East Road, Chaoyang District, Beijing, 100029, China 1.1 Evolution of Analytical Chemistry and Its Challenges in the Twenty-First Century The Chemical Revolution began in the eighteenth century, with the work of French chemist Antoine Lavoisier (1743–1794) representing a fundamental watershed that separated the “modern chemistry” era from the “protochemistry” era (Figure 1.1). However, analytical chemistry, a subdiscipline of chemistry, is an ancient science and its metrological tools, basic applications, and analytical processes can be dated back to early recorded history [1]. In chronological spans covering ancient times, the middle ages, the era of the nineteenth century, and the three chemical revolutionary periods, analytical chemistry has successfully evolved from the verge of the nineteenth century to modern and contemporary times, characterized by its versatile traits and unprecedented challenges in the twenty-first century. Historically, analytical chemistry can be termed as the mother of chemistry, as the nature and the composition of materials are always needed to be iden- tified first for specific utilizations subsequently; therefore, the development of analytical chemistry has always been ahead of general chemistry [2]. During pre-Hellenistic times when chemistry did not exist as a science, various ana- lytical processes, for example, qualitative touchstone method and quantitative fire-assay or cupellation scheme have been in existence as routine quality control measures for the purpose of noble goods authentication and anti-counterfeiting practices. Because of the unavailability of archeological clues for origin tracing, the chemical balance and the weights, as stated in the earliest documents ever found, was supposed to have been used only by the Gods [3]. -
Electrification Ionization: Fundamentals and Applications
Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 11-12-2019 Electrification Ionization: undamentalsF and Applications Bijay Kumar Banstola Louisiana State University and Agricultural and Mechanical College Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Part of the Analytical Chemistry Commons Recommended Citation Banstola, Bijay Kumar, "Electrification Ionization: undamentalsF and Applications" (2019). LSU Doctoral Dissertations. 5103. https://digitalcommons.lsu.edu/gradschool_dissertations/5103 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. ELECTRIFICATION IONIZATION: FUNDAMENTALS AND APPLICATIONS A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Department of Chemistry by Bijay Kumar Banstola B. Sc., Northwestern State University of Louisiana, 2011 December 2019 This dissertation is dedicated to my parents: Tikaram and Shova Banstola my wife: Laxmi Kandel ii ACKNOWLEDGEMENTS I thank my advisor Professor Kermit K. Murray, for his continuous support and guidance throughout my Ph.D. program. Without his unwavering guidance and continuous help and encouragement, I could not have completed this program. I am also thankful to my committee members, Professor Isiah M. Warner, Professor Kenneth Lopata, and Professor Shengli Chen. I thank Dr. Fabrizio Donnarumma for his assistance and valuable insights to overcome the hurdles throughout my program. I appreciate Miss Connie David and Dr. -
Mass Spectrometer Hardware for Analyzing Stable Isotope Ratios
Handbook of Stable Isotope Analytical Techniques, Volume-I P.A. de Groot (Editor) © 2004 Elsevier B.V. All rights reserved. CHAPTER 38 Mass Spectrometer Hardware for Analyzing Stable Isotope Ratios Willi A. Brand Max-Planck-Institute for Biogeochemistry, PO Box 100164, 07701 Jena, Germany e-mail: [email protected] Abstract Mass spectrometers and sample preparation techniques for stable isotope ratio measurements, originally developed and used by a small group of scientists, are now used in a wide range of fields. Instruments today are typically acquired from a manu- facturer rather than being custom built in the laboratory, as was once the case. In order to consistently generate measurements of high precision and reliability, an extensive knowledge of instrumental effects and their underlying causes is required. This con- tribution attempts to fill in the gaps that often characterize the instrumental knowl- edge of relative newcomers to the field. 38.1 Introduction Since the invention of mass spectrometry in 1910 by J.J. Thomson in the Cavendish laboratories in Cambridge(‘parabola spectrograph’; Thompson, 1910), this technique has provided a wealth of information about the microscopic world of atoms, mole- cules and ions. One of the first discoveries was the existence of stable isotopes, which were first seen in 1912 in neon (masses 20 and 22, with respective abundances of 91% and 9%; Thomson, 1913). Following this early work, F.W. Aston in the same laboratory set up a new instrument for which he coined the term ‘mass spectrograph’ which he used for checking almost all of the elements for the existence of isotopes. -
Classification of Ion Sources
Classification of Ion Sources R. Scrivens CERN, Geneva, Switzerland Abstract In this chapter, the anatomy of an ion source is briefly described, as well as a few features of particle motion in electric and magnetic fields, and of particle dynamics and plasmas. Using this information, different types of ion sources are described, highlighting their main mode of operation. 1 Introduction The generation of ions for an ion source is based fundamentally on three main processes, which are i) electron impact ionization, ii) photo-induced ionization and iii) surface ionization. In addition to these, some other atomic and molecular processes can be the process leading to ion extraction, for example, charge exchange between ions and atoms, and molecular dissociation into atoms and ions. Ion sources have always been soundly rooted in the research arena, which has led to continual optimization of the design for each application type and results in an enormous array of ion source types (just a few of which are shown in Fig. 1). In this chapter we will journey through the main different types of ion source, dealing with the main physical processes required for each source to work. To do this, ion sources will be classified into the following general types: • electron bombardment, • d.c./pulsed plasma discharge, • radio-frequency (RF) discharge, • microwave and electron cyclotron resonance (ECR), • laser driven, • surface and • charge exchange. Several excellent books on ion sources exist, but, for the most part, Bernhard Wolf’s book Handbook of Ion Sources [1] has been used as the main source of information for this chapter.