1P36 Deletion Syndrome
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Familial Intellectual Disability As a Result of a Derivative Chromosome
Zhang et al. Molecular Cytogenetics (2018) 11:18 DOI 10.1186/s13039-017-0349-x RESEARCH Open Access Familial intellectual disability as a result of a derivative chromosome 22 originating from a balanced translocation (3;22) in a four generation family Kaihui Zhang1†, Yan Huang2†, Rui Dong1†, Yali Yang2, Ying Wang1, Haiyan Zhang1, Yufeng Zhang1, Zhongtao Gai1* and Yi Liu1* Abstract Background: Balanced reciprocal translocation is usually an exchange of two terminal segments from different chromosomes without phenotypic effect on the carrier while leading to increased risk of generating unbalanced gametes. Here we describe a four-generation family in Shandong province of China with at least three patients sharing severe intellectual disability and developmental delay resulting from a derivative chromosome 22 originating from a balanced translocation (3;22) involving chromosomes 3q28q29 and 22q13.3. Methods: The proband and his relatives were detected by using karyotyping, chromosome microarray analysis, fluorescent in situ hybridization and real-time qPCR. Results: The proband, a 17 month-old boy, presented with severe intellectual disability, developmental delay, specific facial features and special posture of hands. Pedigree analysis showed that there were at least three affected patients. The proband and other two living patients manifested similar phenotypes and were identified to have identically abnormal cytogenetic result with an unbalanced translocation of 9.0 Mb duplication at 3q28q29 and a 1.7Mb microdeletion at 22q13.3 by karyotyping and chromosome microarray analysis. His father and other five relatives had a balanced translocation of 3q and 22q. Fluorescence in situ hybridization and real-time qPCR definitely validated the results. -
Phenotype Correlations in Individuals with Pathogenic RERE Variants
Genotype-phenotype correlations in individuals with pathogenic RERE variants Valerie K. Jordan,1 Brieana Fregeau,2 Xiaoyan Ge,3,4 Jessica Giordano,5 Ronald J. Wapner,5 Tugce B. Balci,6 Melissa T. Carter,6 John A. Bernat,7 Amanda N. Moccia,8 Anshika Srivastava,8 Donna M. Martin,8,9 Stephanie L. Bielas,8 John Pappas,10 Melissa D. Svoboda,11 Marlène Rio,12,13 Nathalie Boddaert,12,14 Vincent Cantagrel,12,15 Andrea M. Lewis,3,16 Fernando Scaglia,3,16 Undiagnosed Diseases Network, Jennefer N. Kohler,17 Jonathan A. Bernstein,17 Annika M. Dries,17 Jill A. Rosenfeld,3 Colette DeFilippo,18 Willa Thorson,19 Yaping Yang,3,4 Elliott H. Sherr,2 Weimin Bi,3,4 Daryl A. Scott1,3,16* 1) Department of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, TX, USA 2) Department of Neurology, University of California, San Francisco, San Francisco, CA, USA 3) Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA 4) Baylor Genetics, Houston, TX, USA 5) Institute of Genomic Medicine and Department of OB/GYN, Columbia University Medical Center, New York, NY, USA 6) Department of Genetics, Children’s Hospital of Eastern Ontario, Ottawa, ON, Canada 7) Stead Family Department of Pediatrics, The University of Iowa, Iowa City, IA, USA 8) Department of Human Genetics, University of Michigan Medical School, Ann Arbor, MI, USA This is the author manuscript accepted for publication and has undergone full peer review but has not been through the copyediting, typesetting, pagination and proofreading process, which may lead to differences between this version and the Version of Record. -
The Advantage of Genome-Wide Microarrays Over Targeted Approaches
PDF hosted at the Radboud Repository of the Radboud University Nijmegen The following full text is a publisher's version. For additional information about this publication click this link. http://hdl.handle.net/2066/70828 Please be advised that this information was generated on 2021-09-24 and may be subject to change. COPY NUMBER VARIATION AND MENTAL RETARDATION opmaak koolen.indd 1 10-09-2008 10:11:31 Copy number variation and mental retardation The studies presented in this thesis were performed at the Department of Human Genetics, Radboud University Nijmegen Medical Center, Nijmegen, the Netherlands. The research was supported by a grant from the Netherlands Organization for Health Research and Development (ZonMw). Publication of this thesis was financially supported by the Department of Human Genetics, Radboud University Nijmegen Medical Center, Nijmegen, the Netherlands. ISBN/EAN 978-90-6464-290-6 © 2008 D.A. Koolen All rights reserved. No part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, by print or otherwise, without permission in writing from the author. Cover photo: Printed by: Ponsen & Looijen B.V., Wageningen opmaak koolen.indd 2 10-09-2008 10:11:31 Copy number variation and mental retardation Een wetenschappelijke proeve op het gebied van de Medische Wetenschappen Proefschrift ter verkrijging van de graad doctor aan de Radboud Universiteit Nijmegen op gezag van de rector magnificus prof. mr. S.C.J.J. Kortmann, volgens besluit van het College van Decanen in het openbaar te verdedigen op donderdag 6 november 2008 om 15.30 uur precies door David Aljosja Koolen geboren op 22 juni 1976 te ‘s-Gravenhage opmaak koolen.indd 3 10-09-2008 10:11:32 Promotor: Prof. -
RARE CHROMOSOME DISORDERS the Term, ‘Rare Chromosome Disorders’, Refers to Conditions Which
INFORMATION SHEET Page 1 COMPLEX LEARNING DIFFICULTIES AND DISABILITIES RESEARCH PROJECT (CLDD) RARE CHROMOSOME DISORDERS The term, ‘rare chromosome disorders’, refers to conditions which: 1. occur due to missing, duplicated or re-arranged chromosome material 2. have a low prevalence rate (thus not including chromosomal disorders such as Down syndrome). Chromosomes are structures found in the nuclei of cells in human bodies. Each chromosome contains thousands of genes which determine how we grow and develop. A typically developing person will have 23 pairs of chromosomes with one member of each pair being inherited from each parent, giving a total of 46 individual chromosomes. Two of these are the sex chromosomes which determine whether we are female (XX) or male (XY). The remaining 44 chromosomes are grouped in 22 pairs, numbered 1 to 22. The arms of a chromosome are called ‘p’ (shorter arm) and ‘q’ (long arm) (see Figure 1); these arms are separated into numerical regions, which in turn are divided into bands and sub-bands. p q Figure 1. Diagram of a chromosome Individually, rare chromosome disorders are extremely uncommon, with some being actually unique; however, collectively rare chromosome disorders make up at least one in every 200 live births, with babies either having symptoms from birth or early childhood, or being carriers of a chromosomal abnormality and experiencing the effects when they try to reproduce in later life (Searle and Hultén, 2009). Recent advances in technology and medical expertise has meant that chromosomes can be viewed at ever increasing magnifications, which is resulting in the detection of more complex defects. -
1P36 Deletion Syndrome: an Update
References (1) Rosenfeld JA, et al. Refinement of causative genes in YOU monosomy 1p36 through clinical and molecular cytogenetic characterization of small interstitial deletions. Am J Med CONTACT US Genet 2010, 152A:1951–1959. Chromosome Disorder Outreach (2) Jordan VK, et al. 1p36 deletion syndrome: an update. ARE Applications Clin Genet 2015, 8:189-200. P.O. Box 724 (3) Oiglane-Shlik E, et al. Monosomy 1p36 - A multifaceted Boca Raton, FL 33429-0724 and still enigmatic syndrome: Four clinically diverse cases with shared white matter abnormalities. Eur J Paed Neurol NOT 2014, 18:338-346. Family Helpline 561.395.4252 [email protected] (4) Battaglia A, et al. Further delineation of deletion 1p36 syndrome in 60 patients: A recognizable phenotype and common cause of developmental delay and mental www.chromodisorder.org ALONE retardation. Pediatrics 2008, 121:404-410. (5) Chan YTP, et al. Answer to "Clinical Quiz". HK J Paediatr (New Series) 2015, 20:212-214. Chromosome (6) Arndt A-K, et al. Fine mapping of the 1p36 deletion Disorder Outreach syndrome identifies mutation of PRDM16 as a cause of cardiomyopathy. Am J Hum Genet 2013, 93: 67-77. (7) Zaveri HP, et al. Identification of critical regions and ABOUT US candidate genes for cardiovascular malformations and cardiomyopathy associated with deletions of chromosome 1p36 Deletion 1p36. PLOS ONE 2014, 9:e85600. Chromosome Disorder Outreach Syndrome Author: Colleen Donnelly provides support and information to anyone diagnosed with a rare chromosome change, (Monosomy 1p36) rearrangement or disorder. CDO actively promotes research and a positive community understanding of all chromosome disorders. CDO is a 501c3 organization founded in 1992. -
3 Chromosome Chapter
Chromosome 3 ©Chromosome Disorder Outreach Inc. (CDO) Technical genetic content provided by Dr. Iosif Lurie, M.D. Ph.D Medical Geneticist and CDO Medical Consultant/Advisor. Ideogram courtesy of the University of Washington Department of Pathology: ©1994 David Adler.hum_03.gif Introduction The size of chromosome 3 is ~200 Mb. Within this chromosome, there are thousands of genes, many of which are necessary for normal intellectual development or involved in the formation of body organs. Deletions of Chromosome 3 The length of the short arm of chromosome 3 is ~90 Mb. Most known deletions of 3p are caused by the loss of its distal 15 Mb segment (3p25–pter). Deletions of the more proximal segments are relatively rare; there are only ~50 reports on such patients. Therefore, it would be premature to talk about any syndrome related to deletions of the proximal part of 3p. The location of the breakpoints, size of deletion, and reported abnormalities are different in most described patients. However, recurrent aortal stenosis in patients with deletion 3p11p14.2, abnormal lung lobation in patients with deletion 3p12p14.2, agenesis or hypoplasia of the corpus callosum in patients with deletion 3p13, microphthalmia and coloboma in patients with deletion 3p13p21.1, choanal atresia and absent gallbladder in patients with deletion 3p13p21, and hearing loss in patients with deletion 3p14 are all indicators that the above–mentioned segments likely contain genes involved in the formation of these systems. Deletions of 3p Deletion of 3p25–pter The most distal segment of the short arm of chromosome 3 is 3p26 and spans ~8 Mb. -
Type II Diabetes and Impaired Glucose Tolerance Due to Severe
Stagi et al. BMC Medical Genetics 2014, 15:16 http://www.biomedcentral.com/1471-2350/15/16 CASE REPORT Open Access Type II diabetes and impaired glucose tolerance due to severe hyperinsulinism in patients with 1p36 deletion syndrome and a Prader-Willi-like phenotype Stefano Stagi1,4*, Elisabetta Lapi2, Marilena Pantaleo2, Francesco Chiarelli3, Salvatore Seminara1 and Maurizio de Martino1 Abstract Background: Deletion of the subtelomeric region of 1p36 is one of the most common subtelomeric deletion syndromes. In monosomy 1p36, the presence of obesity is poorly defined, and glucose metabolism deficiency is rarely reported. However, the presence of a typical Prader-Willi-like phenotype in patients with monosomy 1p36 is controversial. Case presentation: In this report, we describe two female patients, one who is 6 years 2 months of age and another whois10years1monthofage,bothreferredtoourhospitalforobesity and a Prader-Willi-like phenotype. These patients presented with severe obesity (body mass index [BMI] was 26.4 and 27.7, respectively), hyperphagia and developmental delay. Analysis of basal hormone levels showed normal thyroid function and adrenal function but considerable basal hyperinsulinism (the insulin levels were 54.5 and 49.2 μU/ml, respectively). In patient 1, glycaemia was 75 mg/dl (HOMA-R 10.09), and the HbA1c level was 6.1%; in patient 2, glycaemia was 122 mg/dl, and the HbA1c level was 6.6% (HOMA-R 14.82). An oral glucose tolerance test demonstratedimpairedglucosetoleranceanddiabetes mellitus with marked insulin resistance (the peak insulin level for each patient was 197 and 279 μU/mL, respectively, while the 120’ insulin level of each patient was 167 and 234 μU/mL, respectively). -
Inside This Issue
Winter 2014 No. 77 Inside this issue Group News | Fundraising | Members’ Letters | One Family Living with Two Different Chromosome Disorders | Bristol Conference 2014 | Unique Leaflets | Christmas Card Order Form Sophie, Unique’s Chair of Trustees Dear Members, In the past month a few things have reminded me of why it is so important to make connections through Unique but also to draw support from other parents around us. I’ve just returned from Unique’s most recent family conference in Bristol where 150 of us parents and carers had a lovely time in workshops, meals and activities, chatting and watching our children milling around together like one big family since – although we had never met before – we have shared so many experiences in common. However in contrast I have also just met a new mum who has just moved to my area from far away with two toddlers, one with a rare joys of the internet, it is becoming easier to meet others with similar, chromosome disorder, who is starting from scratch with no even very rare, chromosome disorders around the world and to find professional, medical or social support. She reminds me of how yourself talking to them in the middle of the night about some lonely I felt when Max was newly diagnosed, when I knew no one interesting things our children share in common (obsession with with a disabled child let alone anyone with a rare chromosome catalogues, anyone?) And of course we also have an enormous disorder. Elsewhere our latest Unique Facebook group, Unique amount in common with so many parents of children with other Russia, is also just starting up – so far it includes just a small special needs or disabilities around us in our own communities who number of members sharing very different experiences to mine here will often be walking the same path as us. -
Full A-Z List of Genetic Tests Document Reference Number: 413.001
Sheffield Children’s NHS Foundation Trust Department: Sheffield Diagnostic Genetics Service Title: Full A-Z List of Genetic Tests Document reference number: 413.001 Full A-Z List of Genetic Tests SHEFFIELD DIAGNOSTIC GENETICS SERVICE You can search for a test by typing into the ‘Find’ facility in the toolbar above and pressing enter. Click the ‘Find next’ icon to locate multiple entries within the document. *Gene content for Next Generation Sequencing (NGS) panels can be referenced at: https://www.sheffieldchildrens.nhs.uk/sdgs/next-generation-sequencing/ FISH tests listed under “F” starting with constitutional FISH tests listed by chromosome number 1-22,X,Y, followed by oncology FISH tests listed A-Z by gene name. ** Our turnaround times are listed here based on the recommendations of the Association for Clinical Genetic Science (http://www.acgs.uk.com/media/949852/acgs_general_genetic_laboratory_reporting_recommendations_2015.pdf) and are in calendar days. These may be altered locally based on specific Service Level Agreement or clinical urgency. Turnaround Test Specimen Type Volume Notes/Comments Time** Achondroplasia, hypchondroplasia and Blood 0.5-5ml 2-6 weeks thanatophoric dysplasia 0.25-1ml BM in 5-10ml of Acute Lymphoblastic Leukaemia Bone marrow/ transport medium 14 days (ALL) + FISH leukaemic blood OR 1ml BM/VB in Li Hep 0.25-1ml BM in 5-10ml of Acute Myeloid Leukaemia (AML) (+/- Bone marrow/ transport medium 14 days FISH) leukaemic blood OR 1ml BM/VB in Li Hep Adrenoleukodystrophy (ALD) Blood 0.5-5ml EDTA 2-6 weeks (X-linked) -
See Shalini C Reshmi's Curriculum Vitae
Shalini C. Reshmi, Ph.D. Contact Information: Institute for Genomic Medicine Nationwide Children’s Hospital 575 Childrens Crossroads, RB3-WB2233 Columbus, OH 43215 Lab: (614) 722-5321 Fax: (614) 355-6833 [email protected] CURRENT ACADEMIC POSITIONS 2/2018-present Assistant Professor, Department of Pediatrics, The Ohio State University, Columbus, OH 7/2009-present Assistant Professor (Clinical), Department of Pathology, The Ohio State University, Columbus, OH ADMINISTRATIVE APPOINTMENT 10/2016-present Director, Clinical Laboratory Institute for Genomic Medicine Nationwide Children's Hospital, Columbus, OH 9/2012-10/2016 Associate Director, Cytogenetics/Molecular Genetics Laboratory Nationwide Children's Hospital, Columbus, OH 12/2008-9/2012 Assistant Director, Cytogenetics/Molecular Genetics Laboratory Nationwide Children's Hospital, Columbus, OH EDUCATION 9/2001-5/2005 Ph.D. Human Genetics University of Pittsburgh, Graduate School of Public Health Pittsburgh, PA 9/1994-4/1996 M.S. Human Genetics University of Pittsburgh, Graduate School of Public Health Pittsburgh, PA 8/1988-5/1992 B.S. Biology The Catholic University of America Washington, D.C. TRAINING 7/2007-10/2008 American College of Medical Genetics and Genomics Clinical Molecular Genetics University of Chicago, Pritzker School of Medicine Chicago, IL 7/2005-6/2007 American College of Medical Genetics and Genomics Clinical Cytogenetics University of Chicago, Pritzker School of Medicine Chicago, IL Board Certifications 2 9/01/09- Diplomate, American Board of -
Self Injury in 1P36 Deletion Syndrome
VOLUME I RESEARCH COMPONENT: SELF INJURY IN 1P36 DELETION SYNDROME BY ABBY MARR A thesis submitted to The University of Birmingham For the degree of DOCTORATE OF CLINICAL PSYCHOLOGY Department of Clinical Psychology School of Psychology The University of Birmingham June 2009 University of Birmingham Research Archive e-theses repository This unpublished thesis/dissertation is copyright of the author and/or third parties. The intellectual property rights of the author or third parties in respect of this work are as defined by The Copyright Designs and Patents Act 1988 or as modified by any successor legislation. Any use made of information contained in this thesis/dissertation must be in accordance with that legislation and must be properly acknowledged. Further distribution or reproduction in any format is prohibited without the permission of the copyright holder. Overview This thesis is submitted in partial fulfilment of the requirements for the degree of Doctorate of Clinical Psychology (ClinPsyD) at the University of Birmingham. The thesis comprises a research component (Volume I) and a clinical component (Volume II) Volume I consists of two papers, a literature review and an empirical research study. The literature review examines studies that investigated the assessment of hand mouthing in individuals with severe to profound intellectual or multiple disabilities. The aetiology and subsequent treatment of hand mouthing as a behaviour maintained by automatic reinforcement is discussed, with a focus on the interaction between biological and environmental determinants of hand mouthing. The empirical research study examined the prevalence and correlates of self-injurious and aggressive behaviour in children with 1p36 deletion syndrome. -
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