Hinged Plakin Domains Provide Specialized Degrees of Articulation in Envoplakin, Periplakin and Desmoplakin
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Microtubule Plus-End Tracking Proteins in Neuronal Development
Cell. Mol. Life Sci. (2016) 73:2053–2077 DOI 10.1007/s00018-016-2168-3 Cellular and Molecular Life Sciences REVIEW Microtubule plus-end tracking proteins in neuronal development 1 1 1 Dieudonne´e van de Willige • Casper C. Hoogenraad • Anna Akhmanova Received: 13 December 2015 / Revised: 4 February 2016 / Accepted: 22 February 2016 / Published online: 11 March 2016 Ó The Author(s) 2016. This article is published with open access at Springerlink.com Abstract Regulation of the microtubule cytoskeleton is AIS Axon initial segment of pivotal importance for neuronal development and BDNF Brain-derived neurotrophic factor function. One such regulatory mechanism centers on CAMSAP Calmodulin-regulated spectrin-associated microtubule plus-end tracking proteins (?TIPs): struc- protein turally and functionally diverse regulatory factors, which CAP-Gly Cytoskeletal-associated protein glycine-rich can form complex macromolecular assemblies at the CEP Centrosomal protein growing microtubule plus-ends. ?TIPs modulate important CFEOM1 Congenital fibrosis of the extraocular muscles properties of microtubules including their dynamics and type 1 their ability to control cell polarity, membrane transport CH Calponin homology and signaling. Several neurodevelopmental and neurode- CLASP Cytoplasmic linker protein-associated protein generative diseases are associated with mutations in ?TIPs CLIP Cytoplasmic linker protein or with misregulation of these proteins. In this review, we DRG Dorsal root ganglia focus on the role and regulation of ?TIPs in neuronal EB -
Table 2. Significant
Table 2. Significant (Q < 0.05 and |d | > 0.5) transcripts from the meta-analysis Gene Chr Mb Gene Name Affy ProbeSet cDNA_IDs d HAP/LAP d HAP/LAP d d IS Average d Ztest P values Q-value Symbol ID (study #5) 1 2 STS B2m 2 122 beta-2 microglobulin 1452428_a_at AI848245 1.75334941 4 3.2 4 3.2316485 1.07398E-09 5.69E-08 Man2b1 8 84.4 mannosidase 2, alpha B1 1416340_a_at H4049B01 3.75722111 3.87309653 2.1 1.6 2.84852656 5.32443E-07 1.58E-05 1110032A03Rik 9 50.9 RIKEN cDNA 1110032A03 gene 1417211_a_at H4035E05 4 1.66015788 4 1.7 2.82772795 2.94266E-05 0.000527 NA 9 48.5 --- 1456111_at 3.43701477 1.85785922 4 2 2.8237185 9.97969E-08 3.48E-06 Scn4b 9 45.3 Sodium channel, type IV, beta 1434008_at AI844796 3.79536664 1.63774235 3.3 2.3 2.75319499 1.48057E-08 6.21E-07 polypeptide Gadd45gip1 8 84.1 RIKEN cDNA 2310040G17 gene 1417619_at 4 3.38875643 1.4 2 2.69163229 8.84279E-06 0.0001904 BC056474 15 12.1 Mus musculus cDNA clone 1424117_at H3030A06 3.95752801 2.42838452 1.9 2.2 2.62132809 1.3344E-08 5.66E-07 MGC:67360 IMAGE:6823629, complete cds NA 4 153 guanine nucleotide binding protein, 1454696_at -3.46081884 -4 -1.3 -1.6 -2.6026947 8.58458E-05 0.0012617 beta 1 Gnb1 4 153 guanine nucleotide binding protein, 1417432_a_at H3094D02 -3.13334396 -4 -1.6 -1.7 -2.5946297 1.04542E-05 0.0002202 beta 1 Gadd45gip1 8 84.1 RAD23a homolog (S. -
Keratins and Plakin Family Cytolinker Proteins Control the Length Of
RESEARCH ARTICLE Keratins and plakin family cytolinker proteins control the length of epithelial microridge protrusions Yasuko Inaba*, Vasudha Chauhan, Aaron Paul van Loon, Lamia Saiyara Choudhury, Alvaro Sagasti* Molecular, Cell and Developmental Biology Department and Molecular Biology Institute, University of California, Los Angeles, Los Angeles, United States Abstract Actin filaments and microtubules create diverse cellular protrusions, but intermediate filaments, the strongest and most stable cytoskeletal elements, are not known to directly participate in the formation of protrusions. Here we show that keratin intermediate filaments directly regulate the morphogenesis of microridges, elongated protrusions arranged in elaborate maze-like patterns on the surface of mucosal epithelial cells. We found that microridges on zebrafish skin cells contained both actin and keratin filaments. Keratin filaments stabilized microridges, and overexpressing keratins lengthened them. Envoplakin and periplakin, plakin family cytolinkers that bind F-actin and keratins, localized to microridges, and were required for their morphogenesis. Strikingly, plakin protein levels directly dictate microridge length. An actin-binding domain of periplakin was required to initiate microridge morphogenesis, whereas periplakin-keratin binding was required to elongate microridges. These findings separate microridge morphogenesis into distinct steps, expand our understanding of intermediate filament functions, and identify microridges as protrusions that integrate actin and intermediate filaments. *For correspondence: [email protected] (YI); Introduction [email protected] (AS) Cytoskeletal filaments are scaffolds for membrane protrusions that create a vast diversity of cell shapes. The three major classes of cytoskeletal elements—microtubules, actin filaments, and inter- Competing interests: The mediate filaments (IFs)—each have distinct mechanical and biochemical properties and associate authors declare that no with different regulatory proteins, suiting them to different functions. -
Conserved Microtubule–Actin Interactions in Cell Movement and Morphogenesis
REVIEW Conserved microtubule–actin interactions in cell movement and morphogenesis Olga C. Rodriguez, Andrew W. Schaefer, Craig A. Mandato, Paul Forscher, William M. Bement and Clare M. Waterman-Storer Interactions between microtubules and actin are a basic phenomenon that underlies many fundamental processes in which dynamic cellular asymmetries need to be established and maintained. These are processes as diverse as cell motility, neuronal pathfinding, cellular wound healing, cell division and cortical flow. Microtubules and actin exhibit two mechanistic classes of interactions — regulatory and structural. These interactions comprise at least three conserved ‘mechanochemical activity modules’ that perform similar roles in these diverse cell functions. Over the past 35 years, great progress has been made towards under- crosstalk occurs in processes that require dynamic cellular asymme- standing the roles of the microtubule and actin cytoskeletal filament tries to be established or maintained to allow rapid intracellular reor- systems in mechanical cellular processes such as dynamic shape ganization or changes in shape or direction in response to stimuli. change, shape maintenance and intracellular organelle movement. Furthermore, the widespread occurrence of these interactions under- These functions are attributed to the ability of polarized cytoskeletal scores their importance for life, as they occur in diverse cell types polymers to assemble and disassemble rapidly, and to interact with including epithelia, neurons, fibroblasts, oocytes and early embryos, binding proteins and molecular motors that mediate their regulated and across species from yeast to humans. Thus, defining the mecha- movement and/or assembly into higher order structures, such as radial nisms by which actin and microtubules interact is key to understand- arrays or bundles. -
Plakoglobin Is Required for Effective Intermediate Filament Anchorage to Desmosomes Devrim Acehan1, Christopher Petzold1, Iwona Gumper2, David D
ORIGINAL ARTICLE Plakoglobin Is Required for Effective Intermediate Filament Anchorage to Desmosomes Devrim Acehan1, Christopher Petzold1, Iwona Gumper2, David D. Sabatini2, Eliane J. Mu¨ller3, Pamela Cowin2,4 and David L. Stokes1,2,5 Desmosomes are adhesive junctions that provide mechanical coupling between cells. Plakoglobin (PG) is a major component of the intracellular plaque that serves to connect transmembrane elements to the cytoskeleton. We have used electron tomography and immunolabeling to investigate the consequences of PG knockout on the molecular architecture of the intracellular plaque in cultured keratinocytes. Although knockout keratinocytes form substantial numbers of desmosome-like junctions and have a relatively normal intercellular distribution of desmosomal cadherins, their cytoplasmic plaques are sparse and anchoring of intermediate filaments is defective. In the knockout, b-catenin appears to substitute for PG in the clustering of cadherins, but is unable to recruit normal levels of plakophilin-1 and desmoplakin to the plaque. By comparing tomograms of wild type and knockout desmosomes, we have assigned particular densities to desmoplakin and described their interaction with intermediate filaments. Desmoplakin molecules are more extended in wild type than knockout desmosomes, as if intermediate filament connections produced tension within the plaque. On the basis of our observations, we propose a particular assembly sequence, beginning with cadherin clustering within the plasma membrane, followed by recruitment of plakophilin and desmoplakin to the plaque, and ending with anchoring of intermediate filaments, which represents the key to adhesive strength. Journal of Investigative Dermatology (2008) 128, 2665–2675; doi:10.1038/jid.2008.141; published online 22 May 2008 INTRODUCTION dense plaque that is further from the membrane and that Desmosomes are large macromolecular complexes that mediates the binding of intermediate filaments. -
Cytoskeletal Linkers: New Maps for Old Destinations Megan K
R864 Dispatch Cytoskeletal linkers: New MAPs for old destinations Megan K. Houseweart*† and Don W. Cleveland*†‡§ A new isoform of the actin–neurofilament linker protein as ‘bullous pemphigoid antigen’ (BPAG). These proteins BPAG has been found that binds to and stabilizes are large α-helical coiled-coil molecules which have axonal microtubules. This and other newly identified binding domains for one or more of the three cytoskele- microtubule-associated proteins are likely to be just the tal components (Figure 1). For example, the widely tip of an iceberg of multifunctional proteins that expressed, > 500 kD protein plectin has been shown to stabilize and crosslink cytoskeletal filament networks. associate with microtubules, intermediate filaments (glial fibrillary acidic protein, vimentin, keratins, all Addresses: *Ludwig Institute for Cancer Research, †Program in Biomedical Sciences, ‡Division of Cellular and Molecular Medicine and three neurofilament subunit proteins), actin, myosin and §Department of Neuroscience, University of California at San Diego, itself [3]. Given the widespread distribution and multi- La Jolla, California 92093, USA. ple interactions that are characteristic of these proteins, E-mail: [email protected] it is not surprising that a number of human and mouse Current Biology 1999, 9:R864–R866 diseases have been attributed to aberrant or missing cross-linking proteins [4]. 0960-9822/99/$ – see front matter © 1999 Elsevier Science Ltd. All rights reserved. This is the case for mice lacking the locus encoding the numerous isoforms of the essential ~280 kDa linker The cytoplasm of most eukaryotic cells contains a dynamic protein BPAG. Two neuronal isoforms of BPAG both have filamentous protein scaffold composed of 25 nm micro- a carboxy-terminal intermediate-filament-binding domain tubules, 4 nm actin filaments and 10 nm intermediate fila- and also an amino-terminal actin-binding region (Figure 1). -
Deimination, Intermediate Filaments and Associated Proteins
International Journal of Molecular Sciences Review Deimination, Intermediate Filaments and Associated Proteins Julie Briot, Michel Simon and Marie-Claire Méchin * UDEAR, Institut National de la Santé Et de la Recherche Médicale, Université Toulouse III Paul Sabatier, Université Fédérale de Toulouse Midi-Pyrénées, U1056, 31059 Toulouse, France; [email protected] (J.B.); [email protected] (M.S.) * Correspondence: [email protected]; Tel.: +33-5-6115-8425 Received: 27 October 2020; Accepted: 16 November 2020; Published: 19 November 2020 Abstract: Deimination (or citrullination) is a post-translational modification catalyzed by a calcium-dependent enzyme family of five peptidylarginine deiminases (PADs). Deimination is involved in physiological processes (cell differentiation, embryogenesis, innate and adaptive immunity, etc.) and in autoimmune diseases (rheumatoid arthritis, multiple sclerosis and lupus), cancers and neurodegenerative diseases. Intermediate filaments (IF) and associated proteins (IFAP) are major substrates of PADs. Here, we focus on the effects of deimination on the polymerization and solubility properties of IF proteins and on the proteolysis and cross-linking of IFAP, to finally expose some features of interest and some limitations of citrullinomes. Keywords: citrullination; post-translational modification; cytoskeleton; keratin; filaggrin; peptidylarginine deiminase 1. Introduction Intermediate filaments (IF) constitute a unique macromolecular structure with a diameter (10 nm) intermediate between those of actin microfilaments (6 nm) and microtubules (25 nm). In humans, IF are found in all cell types and organize themselves into a complex network. They play an important role in the morphology of a cell (including the nucleus), are essential to its plasticity, its mobility, its adhesion and thus to its function. -
Method of Prognosing Cancers Verfahren Zur Prognose Von Krebsarten Procédé De Prognostic Des Cancers
(19) TZZ Z _T (11) EP 2 295 602 B1 (12) EUROPEAN PATENT SPECIFICATION (45) Date of publication and mention (51) Int Cl.: of the grant of the patent: G01N 33/574 (2006.01) C12Q 1/68 (2006.01) 11.07.2012 Bulletin 2012/28 (21) Application number: 10178350.4 (22) Date of filing: 26.07.2006 (54) Method of prognosing cancers Verfahren zur Prognose von Krebsarten Procédé de prognostic des cancers (84) Designated Contracting States: • KIHARA C ET AL: "Prediction of sensitivity of AT BE BG CH CY CZ DE DK EE ES FI FR GB GR esophageal tumors to adjuvant chemotherapy by HU IE IS IT LI LT LU LV MC NL PL PT RO SE SI cDNA microarray analysis of gene-expression SK TR profiles", CANCER RESEARCH, AMERICAN ASSOCIATION FOR CANCER RESEARCH, (30) Priority: 27.07.2005 US 703263 P BALTIMORE, MD, US, vol. 61, no. 17, September 2001 (2001-09), pages 6474-6479, XP002960719, (43) Date of publication of application: ISSN: 0008-5472 16.03.2011 Bulletin 2011/11 • PORTE H ET AL: "Overexpression of stromelysin-3, BM-40/SPARC, and MET genes in (62) Document number(s) of the earlier application(s) in human esophageal carcinoma: implications for accordance with Art. 76 EPC: prognosis.", CLINICAL CANCER RESEARCH : 06782211.4 / 1 907 582 AN OFFICIAL JOURNAL OF THE AMERICAN ASSOCIATION FOR CANCER RESEARCH. JUN (73) Proprietor: Oncotherapy Science, Inc. 1998, vol. 4, no. 6, June 1998 (1998-06), pages Kawasaki-shi 1375-1382, XP002407525, ISSN: 1078-0432 Kanagawa 213-0012 (JP) • "Affimetrix GeneChip Human Genome U133 Array Set HG-U133A", GEO, 11 March 2002 (72) Inventors: (2002-03-11), XP002254749, • Nakamura, Yusuke • WIGLE DENNIS A ET AL: "Molecular profiling of Tokyo 1138654 (JP) non-small cell lung cancer and correlation with • Daigo, Yataro disease-free survival", CANCER RESEARCH, Tokyo 1138654 (JP) AMERICAN ASSOCIATION FOR CANCER • Nakatsuru, Shuichi REREARCH, US, vol. -
Microtubule-Actin Crosslinking Factor 1 and Plakins As Therapeutic Drug Targets
Tennessee State University Digital Scholarship @ Tennessee State University Biology Faculty Research Department of Biological Sciences 1-26-2018 Microtubule-Actin Crosslinking Factor 1 and Plakins as Therapeutic Drug Targets Quincy A. Quick Tennessee State University Follow this and additional works at: https://digitalscholarship.tnstate.edu/biology_fac Part of the Pharmacology Commons Recommended Citation Quick, Q.A. Microtubule-Actin Crosslinking Factor 1 and Plakins as Therapeutic Drug Targets. Int. J. Mol. Sci. 2018, 19, 368. https://doi.org/10.3390/ijms19020368 This Article is brought to you for free and open access by the Department of Biological Sciences at Digital Scholarship @ Tennessee State University. It has been accepted for inclusion in Biology Faculty Research by an authorized administrator of Digital Scholarship @ Tennessee State University. For more information, please contact [email protected]. International Journal of Molecular Sciences Review Microtubule-Actin Crosslinking Factor 1 and Plakins as Therapeutic Drug Targets Quincy A. Quick Department of Biological Sciences, Tennessee State University, 3500 John A. Merritt Blvd, Nashville, TN 37209, USA; [email protected]; Tel.: +1-(615) 963-5768 Received: 11 December 2017; Accepted: 23 January 2018; Published: 26 January 2018 Abstract: Plakins are a family of seven cytoskeletal cross-linker proteins (microtubule-actin crosslinking factor 1 (MACF), bullous pemphigoid antigen (BPAG1) desmoplakin, envoplakin, periplakin, plectin, epiplakin) that network the three major filaments that comprise the cytoskeleton. Plakins have been found to be involved in disorders and diseases of the skin, heart, nervous system, and cancer that are attributed to autoimmune responses and genetic alterations of these macromolecules. Despite their role and involvement across a spectrum of several diseases, there are no current drugs or pharmacological agents that specifically target the members of this protein family. -
MALE Protein Name Accession Number Molecular Weight CP1 CP2 H1 H2 PDAC1 PDAC2 CP Mean H Mean PDAC Mean T-Test PDAC Vs. H T-Test
MALE t-test t-test Accession Molecular H PDAC PDAC vs. PDAC vs. Protein Name Number Weight CP1 CP2 H1 H2 PDAC1 PDAC2 CP Mean Mean Mean H CP PDAC/H PDAC/CP - 22 kDa protein IPI00219910 22 kDa 7 5 4 8 1 0 6 6 1 0.1126 0.0456 0.1 0.1 - Cold agglutinin FS-1 L-chain (Fragment) IPI00827773 12 kDa 32 39 34 26 53 57 36 30 55 0.0309 0.0388 1.8 1.5 - HRV Fab 027-VL (Fragment) IPI00827643 12 kDa 4 6 0 0 0 0 5 0 0 - 0.0574 - 0.0 - REV25-2 (Fragment) IPI00816794 15 kDa 8 12 5 7 8 9 10 6 8 0.2225 0.3844 1.3 0.8 A1BG Alpha-1B-glycoprotein precursor IPI00022895 54 kDa 115 109 106 112 111 100 112 109 105 0.6497 0.4138 1.0 0.9 A2M Alpha-2-macroglobulin precursor IPI00478003 163 kDa 62 63 86 72 14 18 63 79 16 0.0120 0.0019 0.2 0.3 ABCB1 Multidrug resistance protein 1 IPI00027481 141 kDa 41 46 23 26 52 64 43 25 58 0.0355 0.1660 2.4 1.3 ABHD14B Isoform 1 of Abhydrolase domain-containing proteinIPI00063827 14B 22 kDa 19 15 19 17 15 9 17 18 12 0.2502 0.3306 0.7 0.7 ABP1 Isoform 1 of Amiloride-sensitive amine oxidase [copper-containing]IPI00020982 precursor85 kDa 1 5 8 8 0 0 3 8 0 0.0001 0.2445 0.0 0.0 ACAN aggrecan isoform 2 precursor IPI00027377 250 kDa 38 30 17 28 34 24 34 22 29 0.4877 0.5109 1.3 0.8 ACE Isoform Somatic-1 of Angiotensin-converting enzyme, somaticIPI00437751 isoform precursor150 kDa 48 34 67 56 28 38 41 61 33 0.0600 0.4301 0.5 0.8 ACE2 Isoform 1 of Angiotensin-converting enzyme 2 precursorIPI00465187 92 kDa 11 16 20 30 4 5 13 25 5 0.0557 0.0847 0.2 0.4 ACO1 Cytoplasmic aconitate hydratase IPI00008485 98 kDa 2 2 0 0 0 0 2 0 0 - 0.0081 - 0.0 -
Integrators of the Cytoskeleton That Stabilize Microtubules
CORE Metadata, citation and similar papers at core.ac.uk Provided by Elsevier - Publisher Connector Cell, Vol. 98, 229±238, July 23, 1999, Copyright 1999 by Cell Press Integrators of the Cytoskeleton that Stabilize Microtubules Yanmin Yang,* Christoph Bauer,* Geraldine Strasser,* anchor IFs to junctions such as desmosomes and hemi- Robert Wollman,² Jean-Pierre Julien,³ desmosomes. A conserved IF-binding domain resides in and Elaine Fuchs*§ the carboxy ªtailº segment of most plakins, and deciding *Howard Hughes Medical Institute where to anchor the IFs involves the amino ªheadº seg- Department of Molecular Genetics and Cell Biology ment (Fuchs and Cleveland, 1998). Plakin genes possess ² Department of Neurology multiple tissue-specific promoters and encode differen- Pritzker School of Medicine tially expressed splice forms. An interesting feature of The University of Chicago plakins is that the isoforms encoded by a single gene Chicago, Illinois 60637 perform different functions tailored to the cytoskeletal ³ Center for Research in Neuroscience needs of each specialized cell (Yang et al., 1996). McGill University Recently, certain plakin isoforms were found to in- Montreal, Quebec H3G1A4 terconnect IF and actin cytoskeletons (Yang et al., 1996; Canada Andra et al., 1998). Plectin has this capacity, and inter- estingly, cultured plectin null fibroblasts display pertur- bations in cell motility and actin rearrangements (Andra Summary et al., 1998). In humans, plectin mutations cause a rare form of muscular dystrophy associated with skin blis- Sensory neurodegeneration occurs in mice defective tering, reflective of plectin's expression pattern and a in BPAG1, a gene encoding cytoskeletal linker proteins role for IF linker proteins in mechanical integrity (Fuchs capable of anchoring neuronal intermediate filaments and Cleveland, 1998). -
Regulation of Keratin Filament Network Dynamics
Regulation of keratin filament network dynamics Von der Fakultät für Mathematik, Informatik und Naturwissenschaften der RWTH Aachen University zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften genehmigte Dissertation vorgelegt von Diplom Biologe Marcin Maciej Moch aus Dzierżoniów (früher Reichenbach, NS), Polen Berichter: Universitätsprofessor Dr. med. Rudolf E. Leube Universitätsprofessor Dr. phil. nat. Gabriele Pradel Tag der mündlichen Prüfung: 19. Juni 2015 Diese Dissertation ist auf den Internetseiten der Hochschulbibliothek online verfügbar. This work was performed at the Institute for Molecular and Cellular Anatomy at University Hospital RWTH Aachen by the mentorship of Prof. Dr. med. Rudolf E. Leube. It was exclusively performed by myself, unless otherwise stated in the text. 1. Reviewer: Univ.-Prof. Dr. med. Rudolf E. Leube 2. Reviewer: Univ.-Prof. Dr. phil. nat. Gabriele Pradel Ulm, 15.02.2015 2 Publications Publications Measuring the regulation of keratin filament network dynamics. Moch M, and Herberich G, Aach T, Leube RE, Windoffer R. 2013. Proc Natl Acad Sci U S A. 110:10664-10669. Intermediate filaments and the regulation of focal adhesion. Leube RE, Moch M, Windoffer R. 2015. Current Opinion in Cell Biology. 32:13–20. "Panta rhei": Perpetual cycling of the keratin cytoskeleton. Leube RE, Moch M, Kölsch A, Windoffer R. 2011. Bioarchitecture. 1:39-44. Intracellular motility of intermediate filaments. Leube RE, Moch M, Windoffer R. Under review in: The Cytoskeleton. Editors: Pollard T., Dutcher S., Goldman R. Cold Springer Harbor Laboratory Press, Cold Spring Harbor. Multidimensional monitoring of keratin filaments in cultured cells and in tissues. Schwarz N, and Moch M, Windoffer R, Leube RE.