A Role for the Host Coatomer and KDEL Receptor in Early Vaccinia Biogenesis

Total Page:16

File Type:pdf, Size:1020Kb

A Role for the Host Coatomer and KDEL Receptor in Early Vaccinia Biogenesis A role for the host coatomer and KDEL receptor in early vaccinia biogenesis Leiliang Zhanga,1, Stella Y. Leea,1, Galina V. Beznoussenkob, Peter J. Petersc, Jia-Shu Yanga, Hui-ya Gilberta, Abraham L. Brassd,e, Stephen J. Elledged, Stuart N. Isaacsf, Bernard Mossg, Alexander Mironovb, and Victor W. Hsua,2 aDivision of Rheumatology, Immunology, and Allergy, Brigham and Women’s Hospital, and Department of Medicine, Harvard Medical School, Boston, MA 02115; bDepartment of Cell Biology and Oncology, Consorzio Mario Negri Sud, 66030 Santa Maria Imbaro (Chieti), Italy; cDivision of Cell Biology, Netherlands Cancer Institute, 1066 CX Amsterdam, The Netherlands; dDepartment of Genetics, Center for Genetics and Genomics, Brigham and Women’s Hospital, Howard Hughes Medical Institute, Harvard Medical School, Boston, MA 02115; eGastrointestinal Unit, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114; fDepartment of Medicine, Division of Infectious Diseases, University of Pennsylvania School of Medicine, Philadelphia, PA 19104; and gLaboratory of Viral Diseases, National Institutes of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892 Communicated by Michael B. Brenner, Harvard Medical School, Boston, MA, November 20, 2008 (received for review August 14, 2008) Members of the poxvirus family have been investigated for their coatomer (4), was on the virus (data not shown). Because this applications as vaccines and expression vectors and, more recently, initial detection occurred in the context of viral-mediated over- because of concern for their potential as biological weapons. expression of a host protein, we first sought to ascertain the Vaccinia virus, the prototypic member, evolves through multiple presence of coatomer on wild-type virus that did not encode for forms during its replication. Here, we show a surprising way by any foreign protein. By ImmunoGold EM, we detected ␤-COP which vaccinia hijacks coatomer for early viral biogenesis. Whereas on intracellular infectious forms of the WR strain, MV and WV coatomer forms COPI vesicles in the host early secretory system, (Fig. 1A). Subsequently, EM morphometry revealed that ␤-COP vaccinia formation bypasses this role of coatomer, but instead, on intracellular viruses was enriched by Ϸ4-fold over that on the depends on coatomer interacting with the host KDEL receptor. To host Golgi, where coatomer is normally concentrated (Table 1). gain insight into the viral roles of these two host proteins, we have Thus, because a subunit of coatomer was being specifically detected them on the earliest recognized viral forms. These find- enriched on the virus, we next sought to determine functionally ings not only suggest insights into early vaccinia biogenesis but whether it had a role in vaccinia replication. also reveal an alternate mechanism by which coatomer acts. An initial key hurdle was that coatomer had been shown to be COPI ͉ morphogenesis essential for eukaryotic cell viability from mammals to yeast (5, 6). Thus, we first sought to define a condition of partially perturbing coatomer that would allow us to detect a potential accinia virus initiates replication in discrete regions of the role for coatomer in vaccinia replication and yet not result in Vhost cytoplasm, known as viral factories. Here, viral DNA global cellular dysfunction. When HeLa cells were treated with and proteins first assemble into a core particle, which then siRNA against ␤-COP for 48 h, we observed partial reduction in undergoes membrane wrapping to become an immature virus endogenous ␤-COP (Fig. 1B). When cells were subsequently (IV). The IV then undergoes extensive membrane transforma- infected with WR virus for 24 h in this condition, we found that tion to become a mature virus (MV), which then acquires Ϸ additional layers of membrane from the host trans-Golgi net- viral replication was reduced by 4-fold (Fig. 1B). work to become a wrapped virion (WV). Upon transport to the To show that this reduction upon the partial crippling of host periphery, the WV fuses with the plasma membrane to coatomer was not caused by generalized cellular dysfunction, we become extracellular viruses. Events that lead to MV formation assessed two distinct parameters. With respect to a host process, have been intensely investigated, because the MV is the first, most we examined clathrin-mediated endocytosis, which did not in- CELL BIOLOGY abundant infectious form generated. MV formation also entails a volve coatomer (4). Tracking the internalization of transferrin complex process of membrane morphogenesis, which has intrigued (Tf) receptor (TfR) through fluorescently-labeled Tf bound to not only virologists but cell biologists over the years (1–3). surface TfR, we found that TfR internalization was not signif- As viruses often hijack host factors, an intriguing possibility is icantly affected (Fig. 1C). We also examined the replication of that host coat proteins, which are well known to act in membrane HIV and found that this viral process was not significantly morphogenesis to form intracellular transport vesicles from host affected (Fig. 1D). Thus, we concluded that we had achieved a compartmental membrane (4), participate in early viral biogen- condition of partially perturbing coatomer without leading to esis. However, none has been identified thus far. Yet, another generalized cellular dysfunction. issue relates to the origin of the earliest viral membrane, which We next considered that the standard vaccinia replication is needed for the acquisition of viral infectivity. A compelling assay measured both viral formation and viral infectivity (7). way to demonstrate a host origin for this viral membrane would Thus, we sought to assess viral formation more directly by be the detection of host integral membrane proteins on early purifying intracellular viruses from infected cells, and then viral forms, but none has been detected thus far. quantifying for intact viruses by EM examination. Partial silenc- We became interested in these key issues of vaccinia biogen- esis through an initial serendipitous detection of coatomer on vaccinia virus. Pursuing this finding, we find that coatomer is Author contributions: L.Z., S.Y.L., A.L.B., S.J.E., S.N.I., B.M., A.M., and V.W.H. designed important for early viral formation, and this role is linked to research; L.Z., S.Y.L., G.V.B., P.J.P., J.-S.Y., H.-y.G., A.L.B., and A.M. performed research; L.Z., another host protein, the KDEL receptor (KDELR). Further S.Y.L., G.V.B., P.J.P., J.-S.Y., H.-y.G., A.L.B., S.J.E., S.N.I., B.M., A.M., and V.W.H. analyzed elucidation of how these two proteins play interlinking roles in data; and L.Z., S.Y.L., S.N.I., B.M., and V.W.H. wrote the paper. vaccinia formation suggests insights into viral biogenesis and The authors declare no conflict of interest. how coatomer can be regulated. 1L.Z. and S.Y.L. contributed equally to this work. 2To whom correspondence should be addressed. E-mail: [email protected]. Results This article contains supporting information online at www.pnas.org/cgi/content/full/ In the course of using vaccinia virus as an expression vector, we 0811631106/DCSupplemental. observed by ImmunoGold EM that ␤-COP, a subunit of © 2008 by The National Academy of Sciences of the USA www.pnas.org͞cgi͞doi͞10.1073͞pnas.0811631106 PNAS ͉ January 6, 2009 ͉ vol. 106 ͉ no. 1 ͉ 163–168 Downloaded by guest on September 29, 2021 Fig. 1. Coatomer acts in vaccinia formation. (A) HeLa cells were infected with the WR strain of vaccinia virus for 16 h and then examined by EM with ImmunoGold labeling for ␤-COP. (Scale bar: 50 nm.) (B) HeLa cells, either treated with siRNA against ␤-COP for 48 h or mock-treated, were then infected with WR virus for 24 h. The vaccinia replication assay was then performed, with the mean and standard error from 3 experiments shown (P Ͻ 0.01). Gel shows the level of ␤-COP comparing siRNA-treated versus mock-treated HeLa cells. (C) The surface pool of TfR on HeLa cells, either treated with siRNA or mock-treated, was labeled with fluorescently tagged Tf, and then tracked for internalization into early endosomes. (Scale bar: 10 ␮m.) (D) TZM-bl cells were transfected with siRNAs against different targets, ␤-COP, CXCR4, Tat, or Luciferase as control, or mock-treated. After infection with HIV-IIIB, ␤-galactosidase activity was measured, which was expressed as relative light units (RLU), and then normalized to the condition of mock treatment. The mean with standard deviation from 3 experiments is shown. (E) HeLa cells, either treated with siRNA against ␤-COP for 48 h or mock-treated, were then infected with WR virus for 24 h. Intracellular viral forms were then purified from infected cells, followed by EM examination for intact viruses. Quantitation was performed from 10 randomly selected images, and then expressed as mean with standard error (P Ͻ 0.01). ing of ␤-COP resulted in a Ϸ5-fold reduction in intracellular As the results thus far allowed us to conclude that coatomer viruses detected (Fig. 1E). participated in vaccinia formation, we next sought to gain further As ␤-COP is a subunit of coatomer (4), a prediction was that insight into its role. In this respect, whereas ARF1 is a key coatomer as an entire complex participated in viral formation. regulator of coatomer for host COPI vesicle formation (9), an To confirm this idea, we also examined a mutant CHO cell line earlier vaccinia study had shown that MV formation was not that had been characterized to express a temperature-sensitive affected by treating cells with brefeldin A (BFA) (10), which form of ␧-COP, which became misfolded at the nonpermissive would have perturbed ARF1-regulated COPI transport (9). temperature, resulting in the degradation of the entire coatomer Thus, these observations suggested the possibility that viral complex (6).
Recommended publications
  • A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
    Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated.
    [Show full text]
  • Epigenome-Wide Exploratory Study of Monozygotic Twins Suggests Differentially Methylated Regions to Associate with Hand Grip Strength
    Biogerontology (2019) 20:627–647 https://doi.org/10.1007/s10522-019-09818-1 (0123456789().,-volV)( 0123456789().,-volV) RESEARCH ARTICLE Epigenome-wide exploratory study of monozygotic twins suggests differentially methylated regions to associate with hand grip strength Mette Soerensen . Weilong Li . Birgit Debrabant . Marianne Nygaard . Jonas Mengel-From . Morten Frost . Kaare Christensen . Lene Christiansen . Qihua Tan Received: 15 April 2019 / Accepted: 24 June 2019 / Published online: 28 June 2019 Ó The Author(s) 2019 Abstract Hand grip strength is a measure of mus- significant CpG sites or pathways were found, how- cular strength and is used to study age-related loss of ever two of the suggestive top CpG sites were mapped physical capacity. In order to explore the biological to the COL6A1 and CACNA1B genes, known to be mechanisms that influence hand grip strength varia- related to muscular dysfunction. By investigating tion, an epigenome-wide association study (EWAS) of genomic regions using the comb-p algorithm, several hand grip strength in 672 middle-aged and elderly differentially methylated regions in regulatory monozygotic twins (age 55–90 years) was performed, domains were identified as significantly associated to using both individual and twin pair level analyses, the hand grip strength, and pathway analyses of these latter controlling the influence of genetic variation. regions revealed significant pathways related to the Moreover, as measurements of hand grip strength immune system, autoimmune disorders, including performed over 8 years were available in the elderly diabetes type 1 and viral myocarditis, as well as twins (age 73–90 at intake), a longitudinal EWAS was negative regulation of cell differentiation.
    [Show full text]
  • Uptake and Processing of the Cytolethal Distending Toxin by Mammalian Cells
    Toxins 2014, 6, 3098-3116; doi:10.3390/toxins6113098 OPEN ACCESS toxins ISSN 2072-6651 www.mdpi.com/journal/toxins Review Uptake and Processing of the Cytolethal Distending Toxin by Mammalian Cells Joseph M. DiRienzo Department of Microbiology, School of Dental Medicine, University of Pennsylvania, 240 South 40th Street, Philadelphia, PA 19104, USA; E-Mail: [email protected]; Tel.: +1-215-898-8238; Fax: +1-215-898-8385 External Editor: Holger Barth Received: 19 September 2014; in revised form: 10 October 2014 / Accepted: 10 October 2014 / Published: 31 October 2014 Abstract: The cytolethal distending toxin (Cdt) is a heterotrimeric holotoxin produced by a diverse group of Gram-negative pathogenic bacteria. The Cdts expressed by the members of this group comprise a subclass of the AB toxin superfamily. Some AB toxins have hijacked the retrograde transport pathway, carried out by the Golgi apparatus and endoplasmic reticulum (ER), to translocate to cytosolic targets. Those toxins have been used as tools to decipher the roles of the Golgi and ER in intracellular transport and to develop medically useful delivery reagents. In comparison to the other AB toxins, the Cdt exhibits unique properties, such as translocation to the nucleus, that present specific challenges in understanding the precise molecular details of the trafficking pathway in mammalian cells. The purpose of this review is to present current information about the mechanisms of uptake and translocation of the Cdt in relation to standard concepts of endocytosis and retrograde transport. Studies of the Cdt intoxication process to date have led to the discovery of new translocation pathways and components and most likely will continue to reveal unknown features about the mechanisms by which bacterial proteins target the mammalian cell nucleus.
    [Show full text]
  • KDELR3 Dnaxpab a C-Terminal Tetrapeptide Signal, Usually Lys-Asp-Glu-Leu (KDEL) in Animal Cells, and His-Asp-Glu-Leu (HDEL) in S
    KDELR3 DNAxPab a C-terminal tetrapeptide signal, usually lys-asp-glu-leu (KDEL) in animal cells, and his-asp-glu-leu (HDEL) in S. Catalog Number: H00011015-W01P cerevisiae. This process is mediated by a receptor that recognizes, and binds the tetrapeptide-containing Regulation Status: For research use only (RUO) protein, and returns it to the ER. In yeast, the sorting receptor encoded by a single gene, ERD2, is a Product Description: Rabbit polyclonal antibody raised seven-transmembrane protein. Unlike yeast, several against a full-length human KDELR3 DNA using DNAx™ human homologs of the ERD2 gene, constituting the Immune technology. KDEL receptor gene family, have been described. KDELR3 was the third member of the family to be Immunogen: Full-length human DNA identified, and it encodes a protein highly homologous to KDELR1 and KDELR2 proteins. Two transcript variants Sequence: of KDELR3 that arise by alternative splicing, and encode MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQIL different isoforms of KDELR3 receptor, have been FALVFTTRYLDLFTNFISIYNTVMKVVFLLCAYVTVYMIY described. [provided by RefSeq] GKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEIL WTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYR ALYLANWIRRYQTENFYDQIAVVSGVVQTIFYCDFFYL YVTKVLKGKKLSLPMPI Host: Rabbit Reactivity: Human Applications: Flow Cyt-Tr, IF-Ex, IF-Tr, WB-Tr (See our web site product page for detailed applications information) Protocols: See our web site at http://www.abnova.com/support/protocols.asp or product page for detailed protocols Purification: Protein A Storage Buffer: In 1x PBS, pH 7.4 Storage Instruction: Store at -20°C or lower. Aliquot to avoid repeated freezing and thawing. Entrez GeneID: 11015 Gene Symbol: KDELR3 Gene Alias: ERD2L3 Gene Summary: Retention of resident soluble proteins in the lumen of the endoplasmic reticulum (ER) is achieved in both yeast and animal cells by their continual retrieval from the cis-Golgi, or a pre-Golgi compartment.
    [Show full text]
  • Duplications at 19Q13.33 in Patients with Neurodevelopmental Disorders
    bioRxiv preprint doi: https://doi.org/10.1101/130377; this version posted April 25, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Duplications at 19q13.33 in patients with neurodevelopmental disorders. Eduardo Pérez-Palma, PhD; Elmo Saarentaus; Joris Andrieux, MD, PhD; Marie Ravoet, PhD; Giancarlo V. De Ferrari, PhD; Peter Nuernberg, PhD; Bertrand Isidor, MD, PhD; Bernd A. Neubauer, MD, ; Dennis Lal, PhD. Eduardo Pérez.Palma, Center for Biomedical Research, Faculty of Biological Sciences and Faculty of Medicine, Universidad Andres Bello, Santiago, Chile; and the Cologne Center for Genomics, University of Cologne, Cologne, Germany. Elmo Saarentaus, Stanley Center for Psychiatric Genetics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA; and the Analytic and Translational Genetics Unit, Department of Medicine, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA. Joris Andrieux,Institut de Génétique Médicale Hopital Jeanne de Flandre CHRU de Lille, France. Marie Ravoet, Molecular Immunology Unit, Institut Jules Bordet, Université Libre de Bruxelles, Brussels, Belgium. Giancarlo V. De Ferrari, Center for Biomedical Research, Faculty of Biological Sciences and Faculty of Medicine, Universidad Andres Bello, Santiago, Chile. Peter Nürnberg, Cologne Center for Genomics, University of Cologne, Cologne, Germany. Bertrand Isidor, Service de Génétique Médicale, CHU Hôtel Dieu, France. Bernd A. Neubauer, Department of Neuropediatrics, University Medical Clinic Giessen, Giessen, Germany. Dennis Lal, Stanley Center for Psychiatric Genetics, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA; the Analytic and Translational Genetics Unit, Department of Medicine, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA; and the Cologne Center for Genomics, University of Cologne, Cologne, Germany.
    [Show full text]
  • Curriculum Vitae Kathleen A. Trychta Program in Toxicology University Of
    Depletion of endoplasmic reticulum calcium triggers the loss of ER resident proteins Item Type dissertation Authors Trychta, Kathleen Anne Publication Date 2019 Abstract The endoplasmic reticulum (ER) contains proteins that carry out the diverse functions of the ER including calcium storage, protein folding, modification, and trafficking, lipid metabolism, and drug detoxification. When soluble ER resident proteins wi... Keywords Cellular biology; Molecular biology; Neurosciences; ER retention sequence; KDEL receptor; oxygen-glucose deprivation; Calcium; Endoplasmic Reticulum; Ischemia Download date 10/10/2021 05:06:38 Link to Item http://hdl.handle.net/10713/11613 Curriculum Vitae Kathleen A. Trychta Program in Toxicology University of Maryland, Baltimore Date: July 2019 Contact Information: [email protected] EDUCATION University of Maryland, Baltimore, MD August 2016-Present • Graduate Program • Molecular and Mechanistic Toxicology Colgate University, Hamilton, NY May 2013 • Bachelor of Arts (with honors) • Major: Cellular Neuroscience • Minor: Biology RESEARCH EXPERIENCE National Institutes of Health, Baltimore, MD August 2016-Present National Institute on Drug Abuse Pre-Doctoral Fellow (Dr. Brandon Harvey) • Study the departure of endoplasmic reticulum (ER) resident proteins from the ER in response to pathological conditions and propose a novel pathophysiological phenomenon defined as “ER exodosis” • Develop an assay to longitudinally monitor ER calcium depletion in vitro and in vivo using the specificity of an endogenous
    [Show full text]
  • Examining Differences of Ubiquitination on KDEL Receptor Isoform Expression Zachary Dixon Mentored by Dr
    Examining differences of ubiquitination on KDEL receptor isoform expression Zachary Dixon Mentored by Dr. Emily Wires and Dr. Brandon Harvey Introduction Materials and Methods (cont.) Results (cont.) The disruption of vital cellular processes, commonly supported by Following the identification of putative PTMs (Figure 2), KDELrs were probed Flag Pull-Down Flow-Through the transport of proteins emanant from the endoplasmic reticulum for ubiquitination. SY5Y cells were plated in a 24–well plate, and KDELr plasmids (ER), is a primary factor in disease pathogenesis. Key proteins in this were transfected into cells with no additional treatment, vehicle, or a proteasomal R1 R2 R1 R2 R1 R2 R1 R1 R1 R1 R2 R2 R2 R2 R1 transport are KDEL receptors (KDELrs). Post-translation, nascent inhibitor (MG132). Cells were then lysed and collected for immunoprecipitation R2 MANF proteins are folded by ER chaperones, a subgroup of ER-resident (IP). IP experiments were performed with magnetic beads incubated with FLAG- MANF proteins (ERPs), and moved them to the ER membrane (Trychta et antibodies, followed by PBS-T washes. Samples were centrifuged, incubated with al., 2018). They may also undergo post-translational modifications cell culture media, and eluted. Samples were then run on a 4–12% Bis-Tris gel and 51 kDa (PTMs). Post-secretion from the ER, they are trafficked through the proteins were transferred onto polyvinylidene difluoride (PVDF) membranes. For IgG Golgi, and to their final destination. However, ERPs are unique in this analysis of KDELr isoform relative abundance, PVDF membranes were probed 39 kDa regard; ERPs return from the Golgi to the ER upon interaction with a with IR secondary antibodies and scanned with an infrared scanner.
    [Show full text]
  • RNA Splicing in the Transition from B Cells
    RNA Splicing in the Transition from B Cells to Antibody-Secreting Cells: The Influences of ELL2, Small Nuclear RNA, and Endoplasmic Reticulum Stress This information is current as of September 24, 2021. Ashley M. Nelson, Nolan T. Carew, Sage M. Smith and Christine Milcarek J Immunol 2018; 201:3073-3083; Prepublished online 8 October 2018; doi: 10.4049/jimmunol.1800557 Downloaded from http://www.jimmunol.org/content/201/10/3073 Supplementary http://www.jimmunol.org/content/suppl/2018/10/05/jimmunol.180055 http://www.jimmunol.org/ Material 7.DCSupplemental References This article cites 44 articles, 16 of which you can access for free at: http://www.jimmunol.org/content/201/10/3073.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision by guest on September 24, 2021 • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2018 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology RNA Splicing in the Transition from B Cells to Antibody-Secreting Cells: The Influences of ELL2, Small Nuclear RNA, and Endoplasmic Reticulum Stress Ashley M.
    [Show full text]
  • ACBD3 Modulates KDEL Receptor Interaction with PKA for Its
    Yue et al. BMC Biology (2021) 19:194 https://doi.org/10.1186/s12915-021-01137-7 RESEARCH ARTICLE Open Access ACBD3 modulates KDEL receptor interaction with PKA for its trafficking via tubulovesicular carrier Xihua Yue1†, Yi Qian1†, Lianhui Zhu1, Bopil Gim2, Mengjing Bao1, Jie Jia1,3, Shuaiyang Jing1,3, Yijing Wang1,3, Chuanting Tan1,3, Francesca Bottanelli4, Pascal Ziltener5, Sunkyu Choi6, Piliang Hao1 and Intaek Lee1,7* Abstract Background: KDEL receptor helps establish cellular equilibrium in the early secretory pathway by recycling leaked ER-chaperones to the ER during secretion of newly synthesized proteins. Studies have also shown that KDEL receptor may function as a signaling protein that orchestrates membrane flux through the secretory pathway. We have recently shown that KDEL receptor is also a cell surface receptor, which undergoes highly complex itinerary between trans-Golgi network and the plasma membranes via clathrin-mediated transport carriers. Ironically, however, it is still largely unknown how KDEL receptor is distributed to the Golgi at steady state, since its initial discovery in late 1980s. Results: We used a proximity-based in vivo tagging strategy to further dissect mechanisms of KDEL receptor trafficking. Our new results reveal that ACBD3 may be a key protein that regulates KDEL receptor trafficking via modulation of Arf1-dependent tubule formation. We demonstrate that ACBD3 directly interact with KDEL receptor and form a functionally distinct protein complex in ArfGAPs-independent manner. Depletion of ACBD3 results in re- localization of KDEL receptor to the ER by inducing accelerated retrograde trafficking of KDEL receptor. Importantly, this is caused by specifically altering KDEL receptor interaction with Protein Kinase A and Arf1/ArfGAP1, eventually leading to increased Arf1-GTP-dependent tubular carrier formation at the Golgi.
    [Show full text]
  • Downloaded Per Proteome Cohort Via the Web- Site Links of Table 1, Also Providing Information on the Deposited Spectral Datasets
    www.nature.com/scientificreports OPEN Assessment of a complete and classifed platelet proteome from genome‑wide transcripts of human platelets and megakaryocytes covering platelet functions Jingnan Huang1,2*, Frauke Swieringa1,2,9, Fiorella A. Solari2,9, Isabella Provenzale1, Luigi Grassi3, Ilaria De Simone1, Constance C. F. M. J. Baaten1,4, Rachel Cavill5, Albert Sickmann2,6,7,9, Mattia Frontini3,8,9 & Johan W. M. Heemskerk1,9* Novel platelet and megakaryocyte transcriptome analysis allows prediction of the full or theoretical proteome of a representative human platelet. Here, we integrated the established platelet proteomes from six cohorts of healthy subjects, encompassing 5.2 k proteins, with two novel genome‑wide transcriptomes (57.8 k mRNAs). For 14.8 k protein‑coding transcripts, we assigned the proteins to 21 UniProt‑based classes, based on their preferential intracellular localization and presumed function. This classifed transcriptome‑proteome profle of platelets revealed: (i) Absence of 37.2 k genome‑ wide transcripts. (ii) High quantitative similarity of platelet and megakaryocyte transcriptomes (R = 0.75) for 14.8 k protein‑coding genes, but not for 3.8 k RNA genes or 1.9 k pseudogenes (R = 0.43–0.54), suggesting redistribution of mRNAs upon platelet shedding from megakaryocytes. (iii) Copy numbers of 3.5 k proteins that were restricted in size by the corresponding transcript levels (iv) Near complete coverage of identifed proteins in the relevant transcriptome (log2fpkm > 0.20) except for plasma‑derived secretory proteins, pointing to adhesion and uptake of such proteins. (v) Underrepresentation in the identifed proteome of nuclear‑related, membrane and signaling proteins, as well proteins with low‑level transcripts.
    [Show full text]
  • The Function of KDEL Receptors As UPR Genes in Disease
    International Journal of Molecular Sciences Review The Function of KDEL Receptors as UPR Genes in Disease Emily S. Wires *,†, Kathleen A. Trychta †, Lacey M. Kennedy † and Brandon K. Harvey *,† Molecular Mechanisms of Cellular Stress and Inflammation, Intramural Research Program, National Institute on Drug Abuse, Baltimore, MD 21224, USA; [email protected] (K.A.T.); [email protected] (L.M.K.) * Correspondence: [email protected] (E.S.W.); [email protected] (B.K.H.) † These authors contributed equally. Abstract: The KDEL receptor retrieval pathway is essential for maintaining resident proteins in the endoplasmic reticulum (ER) lumen. ER resident proteins serve a variety of functions, including protein folding and maturation. Perturbations to the lumenal ER microenvironment, such as calcium depletion, can cause protein misfolding and activation of the unfolded protein response (UPR). Additionally, ER resident proteins are secreted from the cell by overwhelming the KDEL receptor retrieval pathway. Recent data show that KDEL receptors are also activated during the UPR through the IRE1/XBP1 signaling pathway as an adaptive response to cellular stress set forth to reduce the loss of ER resident proteins. This review will discuss the emerging connection between UPR activation and KDEL receptors as it pertains to ER proteostasis and disease states. Keywords: KDEL receptor; endoplasmic reticulum; unfolded protein response; ER resident proteins; disease; exodosis 1. Introduction Citation: Wires, E.S.; Trychta, K.A.; Kennedy, L.M.; Harvey, B.K. The The endoplasmic reticulum (ER) is a dynamic intracellular organelle integral to cel- Function of KDEL Receptors as UPR lular homeostasis. Although the ER plays critical roles in lipid synthesis [1], calcium Genes in Disease.
    [Show full text]
  • KDEL Receptor (KDELR1) (C-Term) Mouse Monoclonal Antibody [Clone ID: 2E7] Product Data
    OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for AM20047PU-N KDEL Receptor (KDELR1) (C-term) Mouse Monoclonal Antibody [Clone ID: 2E7] Product data: Product Type: Primary Antibodies Clone Name: 2E7 Applications: IF, WB Recommended Dilution: Western blot: 1/1000-1/2000. 1 µg/ml of this antibody was sufficient for detection of HDEL-containing proteins in 10 µg ofS . cerevisiae lysate by colorimetric immunoblot analysis using Goat anti-mouse IgG -HRP as the secondary antibody. Immunofluorescence: 1/50-1/500. Reactivity: Drosophila, Plant, Yeast Host: Mouse Isotype: IgG2b Clonality: Monoclonal Immunogen: A synthetic HDEL peptide corresponding to the C-terminus of Yeast Bip. Specificity: Detects ~78kDa protein. The 2E7 clone recognizes the C-terminal peptide HDEL, a common version of the endoplasmic reticulum retention signal found in Yeast, Plant, nematode and other ER proteins. It specifically stains HDEL proteins in barnyard grass, beet, cotton, mung bean, sorghum and wheat (4). Formulation: PBS, pH 7.4 containing 50% Glycerol with 0.09% Sodium Azide as preservative State: Purified State: Liquid purified IgG fraction Concentration: lot specific Purification: Protein G Chromatography Conjugation: Unconjugated Storage: Store undiluted at 2-8°C for one month or (in aliquots) at -20°C for longer. Avoid repeated freezing and thawing. Stability: Shelf life: one year from despatch. Gene Name: Homo sapiens KDEL endoplasmic reticulum protein retention receptor 1 (KDELR1) This product is to be used for laboratory only. Not for diagnostic or therapeutic use.
    [Show full text]