Effect of CO2 Concentration on the Growth of Anaerobic Bacteria
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Microbiology Laboratory Exercises Third Edition 2020
MICROBIOLOGY Laboratory Exercises Third Edition Keddis & Rauschenbach 2020 Photo Credits (in order of contribution): Diane Davis, Ines Rauschenbach & Ramaydalis Keddis Acknowledgements: Many thanks to those in the Department of Biochemistry and Microbiology, Rutgers University, who have through the years inspired our enthusiasm for the science and teaching of microbiology, with special thanks to Diane Davis, Douglas Eveleigh and Max Häggblom. Safety: The experiments included in this manual have been deemed safe by the authors when all necessary safety precautions are met. The authors recommend maintaining biosafety level 2 in the laboratory setting and using risk level 1 organisms for all exercises. License: This work is licensed under a Creative Commons Attribution- NonCommercial-NoDerivatives 4.0 International License Microbiology Laboratory Exercises Third Edition 2020 Ramaydalis Keddis, Ph.D. Ines Rauschenbach, Ph.D. Department of Biochemistry and Microbiology Rutgers, The State University of New Jersey CONTENTS PAGE Introduction Schedule ii Best Laboratory Practices Iii Working in a Microbiology Laboratory iv Exercises Preparation of a Culture Medium 1 Culturing and Handling Microorganisms 3 Isolation of a Pure Culture 5 Counting Bacterial Populations 8 Controlling Microorganisms 10 Disinfectants 10 Antimicrobial Agents: Susceptibility Testing 12 Hand Washing 14 The Lethal Effects of Ultraviolet Light 15 Selection of Fungi from Air 17 Microscopy 21 Morphology and Staining of Bacteria 26 Microbial Metabolism 30 Enzyme Assay 32 Metabolic -
Rapid Identification Ofbacteroides Fragilis with Bile and Antibiotic Disks D
JOURNAL OF CuNICAL MICROBIOLOGY, Apr. 1977, p. 439-443 Vol. 5, No. 4 Copyright C 1977 American Society for Microbiology Printed in U.S.A. Rapid Identification ofBacteroides fragilis with Bile and Antibiotic Disks D. L. DRAPER1 AND A. L. BARRY* Section ofInfectious and Immunologic Diseases, School of Medicine, University of California, Davis, California 95616, and Clinical Microbiology Laboratories, Medical Center, Sacramento, California 95817* Received for publication 21 December 1976 A simple screening test is described for separating Bacteroides fragilis from other anaerobic gram-negative bacilli. The test utilizes filter paper disks im- pregnated with 25 mg of oxgall (Difco), tested in conjunction with antibiotic identification disks. The bile disks and antibiotic disks are placed on a supple- mented brucella blood agar plate which has been inoculated by swabbing with a standardized cell suspension. After 24 h at 350C in a GasPak jar, resistance to kanamycin and bile is taken as a presumptive identification of B. fragilis. Susceptibility to one or both disks indicates the need for further identification and additional biochemical tests are required. Those strains that produce insuf- ficient growth within 24 h are not likely to be B. fragilis. The reliability of the bile disk method was tested by comparing results with 100 clinical isolates versus results with bile in thioglycolate broth, peptone-yeast extract-glucose broth, and tryptic soy agar. All four bile test methods gave equilvalent results, but the broth media required much longer periods of incubation. Bacteroides fragilis is the anaerobic gram- would quickly identify most B. fragilis strains negative bacillus most frequently recovered could significantly reduce the number of iso- from human infections. -
Medical Bacteriology
LECTURE NOTES Degree and Diploma Programs For Environmental Health Students Medical Bacteriology Abilo Tadesse, Meseret Alem University of Gondar In collaboration with the Ethiopia Public Health Training Initiative, The Carter Center, the Ethiopia Ministry of Health, and the Ethiopia Ministry of Education September 2006 Funded under USAID Cooperative Agreement No. 663-A-00-00-0358-00. Produced in collaboration with the Ethiopia Public Health Training Initiative, The Carter Center, the Ethiopia Ministry of Health, and the Ethiopia Ministry of Education. Important Guidelines for Printing and Photocopying Limited permission is granted free of charge to print or photocopy all pages of this publication for educational, not-for-profit use by health care workers, students or faculty. All copies must retain all author credits and copyright notices included in the original document. Under no circumstances is it permissible to sell or distribute on a commercial basis, or to claim authorship of, copies of material reproduced from this publication. ©2006 by Abilo Tadesse, Meseret Alem All rights reserved. Except as expressly provided above, no part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, recording, or by any information storage and retrieval system, without written permission of the author or authors. This material is intended for educational use only by practicing health care workers or students and faculty in a health care field. PREFACE Text book on Medical Bacteriology for Medical Laboratory Technology students are not available as need, so this lecture note will alleviate the acute shortage of text books and reference materials on medical bacteriology. -
Obligate Anaerobe in Thioglycollate Medium
Obligate Anaerobe In Thioglycollate Medium Restiform and pernicious Monty addled her libertarians chastens rurally or alluding drawlingly, is Lorne ungainful? Ernst often laicises intrusively when haustellate Talbert underpeep parchedly and skiagraph her therapies. Adair uncanonizing shily as Mozartean Gifford tellurizing her unsociableness disentwining septically. Anaerobic bacteria can be identified by separate them in test tubes of thioglycollate broth. Aerobic and Anaerobic Growth Lab Exercise 6 Sp16 Canvas. Enriched Thioglycollate Broth is recommended for the isolation cultivation and identification of society wide following of obligate anaerobic bacteria Composition. How to the center of oxygen allowing the pus should not as they may live session is medium in thioglycollate are entire plate in air and aerobic respiration. We extend such an organism an aerotolerant anaerobe and set just off against an additional category of oxygen relationship Those left black the facultative. A movie free from thioglycollate for the growth of aerobic and anaerobic. Opened under a medium onto a medium on medium low, obligate anaerobe in thioglycollate medium, obligate and environmental parameters. Anaerobic Thioglycollate Medium Base Himedia. Find each pipette, obligate anaerobe growth. Incubation obligate anaerobes will grow abnormal in that portion of turkey broth for the. Obligate Anaerobes are actually poisoned by various forms of oxygen. Enriched Thioglycollate Broth M73 VWR. BBL Thioglycollate Medium Enriched with CiteSeerX. The model organism Escherichia coli is a facultative anaerobic bacterium ie it is solar to operate in both aerobic and anaerobic environments. Thioglycollate medium Difco containing 1 dextrose and B. Oxygen Requirements for Microbial Growth Microbiology. Fluid Thioglycollate Medium Flashcards Quizlet. The Thioglycolate medium other the word hand stands out fast its ability to. -
Isolation of Rhizobacteria in Southwestern Québec, Canada: An
Isolation of rhizobacteria in Southwestern Québec, Canada: An investigation of their impact on the growth and salinity stress alleviation in Arabidopsis thaliana and crop plants Di Fan Department of Plant Science Faculty of Agricultural and Environmental Sciences Macdonald Campus of McGill University 21111 Lakeshore Road, Sainte-Anne-de-Bellevue, Québec H9X 3V9 December 2017 A thesis submitted to McGill University in partial fulfillment of the requirements of the degree of DOCTOR OF PHILOSOPHY © Di Fan, Canada, 2017 Table of contents Abstract ................................................................................................. x Résumé ................................................................................................ xiii Acknowledegments ............................................................................. xv Preface ................................................................................................ xviii Contribution of authors ................................................................................ xviii Chapter 1................................................................................................. 1 Introduction ............................................................................................ 1 Chapter 2................................................................................................. 5 Literature Review ................................................................................... 5 2.1 What are root exudates? ......................................................................... -
2017 Proceedings Book
2017 30TH PROCEEDINGS OF NAVDF April 26-29, 2017 ORLANDO, FLORIDA 2 (orfenicol, terbinane, mometasone furoate) Otic Solution Antibacterial, antifungal, and anti-inammatory For Otic Use in Dogs Only The following information is a summary of the complete product information and is not comprehensive. Please refer to the approved product label for complete product information prior to use. CAUTION: Federal (U.S.A.) law restricts this drug to use by or on the order of a licensed veterinarian. PRODUCT DESCRIPTION: CLARO® contains 16.6 mg/mL orfenicol, 14.8 mg/mL terbinane (equivalent to 16.6 mg/mL terbinane hydrochloride) and 2.2 mg/mL mometasone furoate. Inactive ingredients include puried water, propylene carbonate, propylene glycol, ethyl alcohol, and polyethylene glycol. INDICATIONS: CLARO® is indicated for the treatment of otitis externa in dogs associated with susceptible strains of yeast (Malassezia pachydermatis) and bacteria (Staphylococcus pseudintermedius). DOSAGE AND ADMINISTRATION: CLARO® should be administered by veterinary personnel. Administration is one dose (1 dropperette) per aected ear. The duration of eect should last 30 days. Clean and dry the external ear canal before administering the product. Verify the tympanic membrane is intact prior to administration. Cleaning the ear after dosing may aect product eectiveness. Refer to product label for complete directions for use. CONTRAINDICATIONS: Do not use in dogs with known tympanic membrane perforation (see PRECAUTIONS). CLARO® is contraindicated in dogs with known or suspected hypersensitivity to orfenicol, terbinane hydrochloride, or mometasone furoate, the inactive ingredients listed above, or similar drugs, or any ingredient in these medicines. WARNINGS: Human Warnings: Not for use in humans. -
Special Bacteriology Basic Laboratory Tests
2016 UNIVERZITA KOMENSKÉHO V BRATISLAVE JESSENIOVA LEKÁRSKA FAKULTA V MARTINE Jana KOMPANÍKOVÁ Martina NEUSCHLOVÁ Vladimíra SADLOŇOVÁ SPECIAL BACTERIOLOGY BASIC LABORATORY TESTS Preface Special Bacteriology – Basic Laboratory Tests is intended above all for medical students. The book includes standard procedures commonly used in microbiological laboratory. We have tried to present principles of laboratory tests to make them easier to understand. Authors Contents 1 STAPHYLOCOCCI ........................................................................................................ 5 1.1 GRAM STAIN ................................................................................................................... 7 1.2 STAPHYLOCOCCI - BLOOD AGAR CULTURE .................................................................... 7 1.3 CATALASE TEST ............................................................................................................... 8 1.4 MANNITOL SALT AGAR CULTURE ................................................................................... 9 1.5 COAGULASE TEST ......................................................................................................... 11 2 STREPTOCOCCI ........................................................................................................ 14 2.1 STREPTOCOCCI - GRAM STAIN ..................................................................................... 15 2.2 STREPTOCOCCI - BLOOD AGAR CULTURE .................................................................... -
CDC, ASM, APHL: Basic Protocols for Level a Laboratories for The
BASIC PROTOCOLS FOR LEVEL A LABORATORIES FOR THE PRESUMPTIVE IDENTIFICATION OF Francisella tularensis CDC Centers for Disease Control and Prevention ASM American Society for Microbiology APHL Association of Public Health Laboratories ftu.asm.cp.121301 12/13/01 Page 1 of 13 Credits: Francisella tularensis Subject Matter Expert, CDC May C. Chu, Ph.D. Centers for Disease Control and Prevention Subject Matter Expert, ASM Roberta B. Carey, Ph.D., D (ABMMM) Loyola University Medical Center David F. Welch, Ph.D., D (ABMMM) University of Texas Southwestern Medical Center Acknowledgments Thomas J. Quan, Ph.D. Centers for Disease Control and Prevention As well as: Zenda L. Berrada, Holly B. Bratcher, Leon G. Carter, Devin W. Close, Katie L. Davis, Todd S. Deppe, Kiyotaka R. Tsuchiya, Betty A. Wilmoth, Brook M. Yockey, and David T. Dennis Technical Editor Stephen A. Morse, M.S.P.H., Ph.D. Centers for Disease Control and Prevention ftu.asm.cp.121301 12/13/01 Page 2 of 13 Table of Contents: Francisella tularensis I. General information A. Description of organism B. History C. Geographic distribution D. Clinical presentation II. Procedures A. General B. Precautions C. Specimen 1. Acceptable specimens 2. Specimen handling 3. Rejection criteria D. Materials 1. Media 2. Reagents 3. Equipment/supplies E. Quality control F. Stains and smears G. Cultures H. Biochemical reactions/tests I. Interpretation and reporting 1. Suspected criteria 2. Reporting/appropriate action J. Limitations III. References ftu.asm.cp.121301 12/13/01 Page 3 of 13 I. General information A. Description of organism Francisella tularensis (F. tularensis) is a tiny, pleomorphic, nonmotile, gram-negative, facultative intracellular coccobacillus (0.2 to 0.5 µm by 0.7 to 1.0 µm). -
Streptococcus Laboratory General Methods
The reference used for compiling the methods in Section I is: Murray, P.R., Baron, E. J., Jorgensen, J.J., Pfaller, M.A., and Yolken, R.H. Manual of Clinical Microbiology, 8th ed. ASM Press: Washington, DC, 2003. The Streptococcus species identification methods in Section II were compiled by Dr. Lynn Shewmaker. Also thanks to input from several individuals, including Richard Facklam and Lucia Teixeira. Section I. 1. Accuprobe-Enterococcus Test………….………..4 2. Accuprobe-Pneumococcus Test …………..….….4 3. Acid formation in carbohydrate broth..................5 4. Arginine Hydrolysis……………………….……….6 5. Bacitracin Test……………………………………..7 6. Bile-esculin Test…………………………………...8 7. Bile solubility Test …………………………………9 8. CAMP Test…......................................................10 9. Catalase Test......................................................11 10. Clindamycin test………………………………….12 11. Esculin hydrolysis……………………………….. 13 12. Gas from MRS broth……………………………...14 13. Gram Stain………………………………………...15 14. Growth at 10 & 45C……………………………. 17 15. Hemolysis………………………………………….18 16. Hippurate hydrolysis…………………………… 19 17. Lancefield Group Antigen………………………..20 18. Leucine amino peptidase (LAP)…………………21 19. Litmus Milk Test…………………………………..22 20. Motility………………………………………………23 21. 6.5% NaCl Tolerace Test...................................24 22. Optochin…………………………………………….25 23. Pigmentation....................................................... 26 24. Pyridoxal Requirement Test (Vitamin B6)……….27 25. Pyrrolidonlarylamindase (PYR)............................28 26. -
LAB 5. Fermentation and Respiration
LAB 5. Fermentation and Respiration Protocols for Anaerobic growth, including use of Anaerobe Chamber, Catalase Assay, Oxidase Assay, Assay for Carbohydrate Utilization, Use of Oxidative-Fermentation tubes. INTRODUCTION Organisms that use preformed organic compounds as their source of carbon and energy are called chemoheterotrophs. Chemoheterotrophs exhibit two basic strategies of energy production: respiration and fermentation. To produce energy, both processes depend upon the flow of electrons from a substrate to a terminal electron acceptor. The electron acceptor (having a negative reduction potential) accepts electrons readily from the substrate (having a positive reduction potential). Respiration is the more efficient process whereby the substrate molecule is completely oxidized to CO2, and a maximum amount of energy is released. This process most commonly uses an inorganic molecule to serve as the final electron acceptor (O2 in aerobic respiration). Fermentation is less efficient. The substrate, commonly a sugar such as glucose, is not completely oxidized. Rather, the substrate is broken down to form pyruvate which still harbors potential energy. In fermentation the electrons from oxidation flow to an organic electron acceptor (pyruvate, or a byproduct of pyruvate) resulting in the formation of fermentation end products. The chemistry of endproducts formed during fermentation will vary depending upon the steps in this second portion of the fermentation pathway. The diversity within heterotrophic organisms can be seen in the pathways -
E17.Full-Text.Pdf
Recovery of Anaerobic Bacteria From Four Children With Postthoracotomy Sternal Wound Infection Itzhak Brook, MD, MSc ABSTRACT. The cases of 4 children who developed purulent contents into a syringe that was immediately sealed and postthoracotomy sternal wound infection caused by an- transported to the laboratory within 30 minutes or by swab that aerobic bacteria are presented. The predominate anaer- was dipped into the pus and introduced into an anaerobic trans- obes were Peptostreptococcus species and pigmented port system (Port-A-Cul; BBL Microbiology Systems, Cock- eysville, MD) or a Vacutainer (BD Vacutainer System, Rutherford, Prevotella species. Polymicrobial infection was present NJ) and transported to the laboratory within 2 hours. in all cases, and aerobic bacteria also were recovered in 2 Sheep’s blood (5%), chocolate, and MacConkey agar plates instances. All patients responded to surgical debride- were inoculated at 37°C aerobically (MacConkey) or under 5% ment and antimicrobials effective against the isolated CO2 (blood and chocolate) and examined at 24 and 48 hours. For aerobic and anaerobic bacteria. These findings highlight isolation of anaerobes, the specimen material was plated onto the potential importance of anaerobic bacteria in post- prereduced vitamin K1-enriched Brucella blood agar, an anaerobic thoracotomy sternal wound infection. Pediatrics 2001; blood agar plate containing kanamycin and vancomycin, and an 108(1). URL: http://www.pediatrics.org/cgi/content/full/ aerobic blood plate containing colistin and nalidixic acid and 12 108/1/e17; anaerobic bacteria, Peptostreptococcus species, inoculated into an enriched thioglycolate broth, incubated in GasPak jars (BBL Microbiology Systems), and examined at 48 and Prevotella species, Staphylococcus aureus, sternal wound. -
Enriched Thioglycollate Broth M738 Intended Use: Recommended for Isolation, Cultivation and Identification of a Wide Variety of Obligate Anaerobic Bacteria
Enriched Thioglycollate Broth M738 Intended Use: Recommended for isolation, cultivation and identification of a wide variety of obligate anaerobic bacteria. Composition** Ingredients Gms / Litre Tryptone 17.000 Soya peptone 3.000 Dextrose (Glucose) 6.000 Sodium chloride 2.500 Sodium thioglycollate 0.500 L-Cystine 0.250 Sodium sulphite 0.100 Hemin 0.005 Vitamin K1 0.0001 Agar 0.700 Sodium bicarbonate 1.000 Final pH ( at 25°C) 7.0±0.2 **Formula adjusted, standardized to suit performance parameters Directions Suspend 31.06 grams in 1000 ml purified / distilled water. Heat to boiling to dissolve the medium completely. Sterilize by autoclaving at 118-121°C for 15 minutes(12-15 lbs pressure respectively). Aseptically add 10% rabbit or horse serum. Dispense in tubes or flasks as desired. Cool and dry under 85% N2, 10% H2 and 5% CO2 atmosphere. Principle And Interpretation Enriched Thioglycollate Medium is recommended for use in isolation and cultivation of fastidious and obligate anaerobic bacteria from clinical materials (1). This medium is often used for susceptibility testing of anaerobes by broth disk elution method. This medium is the modification of original Brewers formulation (2,3), with the addition of vitamin K1, sodium bicarbonate, hemin and rabbit or horse serum. Tryptone and soya peptone supports growth of wide variety of fastidious microorganisms. Sodium thioglycollate lowers the oxidation-reduction potential for anaerobic growth and also neutralizes the bacteriostatic effect of mercurial compounds. Most organisms show earlier and more vigorous growth in presence of dextrose, hemin and vitamin K1. Hemin is the source of X-factor, which stimulates the growth of many microorganisms.