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CRISPR/Cas9 Genome Editing in Weakly Electric Fish
Journal of Visualized Experiments www.jove.com Video Article Silencing the Spark: CRISPR/Cas9 Genome Editing in Weakly Electric Fish Savvas J. Constantinou1, Linh Nguyen2, Frank Kirschbaum2, Vielka L. Salazar3, Jason R. Gallant1 1 Department of Integrative Biology, Michigan State University 2 Faculty of Life Sciences, Unit of Biology and Ecology of Fishes, Humboldt University 3 Department of Biology, Cape Breton University Correspondence to: Jason R. Gallant at [email protected] URL: https://www.jove.com/video/60253 DOI: doi:10.3791/60253 Keywords: Biology, Issue 152, CRISPR/Cas9, electric fish, single cell microinjection, scn4aa, electric organ discharge, genome modification, mormyrid, gymnotiform Date Published: 10/27/2019 Citation: Constantinou, S.J., Nguyen, L., Kirschbaum, F., Salazar, V.L., Gallant, J.R. Silencing the Spark: CRISPR/Cas9 Genome Editing in Weakly Electric Fish. J. Vis. Exp. (152), e60253, doi:10.3791/60253 (2019). Abstract Electroreception and electrogenesis have changed in the evolutionary history of vertebrates. There is a striking degree of convergence in these independently derived phenotypes, which share a common genetic architecture. This is perhaps best exemplified by the numerous convergent features of gymnotiforms and mormyrids, two species-rich teleost clades that produce and detect weak electric fields and are called weakly electric fish. In the 50 years since the discovery that weakly electric fish use electricity to sense their surroundings and communicate, a growing community of scientists has gained tremendous insights into evolution of development, systems and circuits neuroscience, cellular physiology, ecology, evolutionary biology, and behavior. More recently, there has been a proliferation of genomic resources for electric fish. -
The Effect of Endocannabinoids on Carbachol Induced Contractions in the Rat Uterus 2008 REU Animal Behavior Abstract
The Effect of Endocannabinoids on Carbachol Induced Contractions in the Rat Uterus 2008 REU Animal Behavior Abstract Gilda Bobele Kinsey Institute and the Center for the Integrative Study of Animal Behavior Indiana University, Bloomington, IN Interest in endogenous cannabinoids has been generated by the well-document analgesic properties of exogenous cannabinoids, most familiarly Δ9-tetrahydrocannabinol. The endocannabinoid pathway is a complex signaling system involving CB1 and CB2 G- protein coupled receptors, which are activated by lipid ligands. Previous research has delineated the roles of both receptors in analgesia and nociception by using knockout mice and genetic studies in combination with pain model tests, but - due to pain tolerance differences in the strains of rat used and variation in pain models - previous tests on the properties of the CB1 and CB2 receptors have been conflicting. Regardless, regulation of the endocannabinoid pathway has the potential to regulate pain response and treat pain disorders. Part of the established endocannabinoid system involves a calcium-dependent transacylase-catalyzed enzymatic phosphorylation and hydrolysis that produces of N- acylethanolamines. Endocannabinoids such as anandamide have been shown to antagonize the spontaneous contractility of muscarinic smooth muscle ileum tissue, repressing the observed amplitude of contractions in a concentration-dependent fashion. Contractions in uterine and other smooth muscle tissue are stimulated by the parasympathetic nervous system’s release of acetylcholine, and thus an organ bath experiment was used to manipulate the pathway and observe resulting contractions. Tissue harvested from rats determined to be in estrus of a regularly proceeding cycle was dissected into four samples and mounted in buffer solution at 32 degrees Celsius. -
Convergent Evolution of Weakly Electric Fishes from Floodplain Habitats in Africa and South America
Environmental Biology of Fishes 49: 175–186, 1997. 1997 Kluwer Academic Publishers. Printed in the Netherlands. Convergent evolution of weakly electric fishes from floodplain habitats in Africa and South America Kirk O. Winemiller & Alphonse Adite Department of Wildlife and Fisheries Sciences, Texas A&M University, College Station, TX 77843, U.S.A. Received 19.7.1995 Accepted 27.5.1996 Key words: diet, electrogenesis, electroreception, foraging, morphology, niche, Venezuela, Zambia Synopsis An assemblage of seven gymnotiform fishes in Venezuela was compared with an assemblage of six mormyri- form fishes in Zambia to test the assumption of convergent evolution in the two groups of very distantly related, weakly electric, noctournal fishes. Both assemblages occur in strongly seasonal floodplain habitats, but the upper Zambezi floodplain in Zambia covers a much larger area. The two assemblages had broad diet overlap but relatively narrow overlap of morphological attributes associated with feeding. The gymnotiform assemblage had greater morphological variation, but mormyriforms had more dietary variation. There was ample evidence of evolutionary convergence based on both morphology and diet, and this was despite the fact that species pairwise morphological similarity and dietary similarity were uncorrelated in this dataset. For the most part, the two groups have diversified in a convergent fashion within the confines of their broader niche as nocturnal invertebrate feeders. Both assemblages contain midwater planktivores, microphagous vegetation- dwellers, macrophagous benthic foragers, and long-snouted benthic probers. The gymnotiform assemblage has one piscivore, a niche not represented in the upper Zambezi mormyriform assemblage, but present in the form of Mormyrops deliciousus in the lower Zambezi and many other regions of Africa. -
Curriculum Vitae
Zakon, H.H. 1 CURRICULUM VITAE Harold H. Zakon Section of Neurobiology phone: (512)-471-0194, -3440 The University of Texas fax: (512)-471-9651 Austin, TX 78712 E-mail: [email protected] EDUCATION 1981-1983: Postdoctoral fellow, Scripps Institution of Oceanography, University of California, San Diego, Lab. of Dr. T.H. Bullock. 1974-1981: Ph.D. in Neurobiology and Behavior, Cornell University, Ithaca, NY. 1968-1972: B. S. with High Honors, Marlboro College, Marlboro, VT. PROFESSIONAL EXPERIENCE 2001-- Adjunct Professor, Marine Biological Laboratory, Woods Hole, MA. 1999-2006 Chairman, Section of Neurobiology, The University of Texas at Austin. 1998-- Professor, Section of Neurobiology, The University of Texas, Austin. 1994-1998 Professor, Dept. of Zoology, The University of Texas, Austin. 1988-1993: Assoc. Professor, Dept. of Zoology, The University of Texas, Austin. 1983-1988: Assist. Professor, Dept. of Zoology, The University of Texas, Austin. 1981-1983: Postdoctoral fellow at The University of California, San Diego, Calif. 1974-1981: Teaching and Research Assist., Graduate Program at Cornell. 1972-1974: Research Assist., Dept. Psychiatric Research, Harvard Medical School, Cambridge, MA. PROFESSIONAL SOCIETIES Society for Neuroscience; International Society for Neuroethology; Association for Research in Otolaryngology; American Association for the Advancement of Science; International Brain Research Organization, Society for Behavioral Neuroendocrinology. PROFESSIONAL SERVICE Reviewer for: Animal Behavior; Brain, Behavior & Evolution; Brain Research; Comparative Physiology & Biochemistry; BMC Neuroscience; Current Biology; General & Comparative Endocrinology; FEBS Letters; Genes, Brain & Behavior; Hearing Research; Hormones and Behavior; J. Biological Chemistry.; J. Comparative Neurology; J. Comparative Physiology A; J. Experimental Biology; J. Molecular Evolution; J. Neurobiology; J. Neurophysiology; J. -
Resolving Deep Nodes in an Ancient Radiation of Neotropical Fishes in The
Resolving Deep Nodes in an Ancient Radiation of Neotropical Fishes in the Presence of Conflicting Signals from Incomplete Lineage Sorting SUPPLEMENTARY MATERIAL Table S1. Concordance factors and their 95% CI for the most frequent bipartitios in the concordance tree inferred from the Bayesian concordance analysis in BUCKy with values of α=1, 5, 10 and ∞. Bipartition α=1 α=5 α=10 α=∞ Gymnotiformes|… 0.961 (0.954-0.970) 0.961 (0.951-0.970) 0.96 (0.951-0.967) 0.848 (0.826-0.872) Apteronotidae|… 0.981 (0.973-0.989) 0.979 (0.970-0.986) 0.981 (0.973-0.989) 0.937 (0.918-0.954) Sternopygidae|… 0.558 (0.527-0.601) 0.565 (0.541-0.590) 0.571 (0.541-0.598) 0.347 (0.315-0.380) Pulseoidea|… 0.386 (0.353-0.435) 0.402 (0.372-0.438) 0.398 (0.353-0.440) 0.34 (0.304-0.375) Gymnotidae|… 0.29 (0.242-0.342) 0.277 (0.245-0.312) 0.285 (0.236-0.326) 0.157 (0.128-0.188) Rhamphichthyoidea|… 0.908 (0.886-0.924) 0.903 (0.872-0.924) 0.908 (0.886-0.924) 0.719 (0.690-0.747) Pulseoidea|… 0.386 (0.353-0.435) 0.402 (0.372-0.438) 0.398 (0.353-0.440) 0.34 (0.304-0.375) Table S2. Bootstrap support values recovered for the major nodes of the Gymnotiformes species tree inferred in ASTRAL-II for each one of the filtered and non-filtered datasets. -
Gymnotiformes: Apteronotidae), with Assignment to a New Genus
Neotropical Ichthyology Original article https://doi.org/10.1590/1982-0224-2019-0126 urn:lsid:zoobank.org:pub:4ECB5004-B2C9-4467-9760-B4F11199DCF8 A redescription of deep-channel ghost knifefish, Sternarchogiton preto (Gymnotiformes: Apteronotidae), with assignment to a new genus Correspondence: 1 2 3 Maxwell J. Bernt Maxwell J. Bernt , Aaron H. Fronk , Kory M. Evans 2 [email protected] and James S. Albert From a study of morphological and molecular datasets we determine that a species originally described as Sternarchogiton preto does not form a monophyletic group with the other valid species of Sternarchogiton including the type species, S. nattereri. Previously-published phylogenetic analyses indicate that this species is sister to a diverse clade comprised of six described apteronotid genera. We therefore place it into a new genus diagnosed by the presence of three cranial fontanels, first and second infraorbital bones independent (not fused), the absence of an ascending process on the endopterygoid, and dark brown to black pigments over the body surface and fins membranes. We additionally provide Submitted November 13, 2019 a redescription of this enigmatic species with an emphasis on its osteology, and Accepted February 2, 2020 by provide the first documentation of secondary sexual dimorphism in this species. William Crampton Published April 20, 2020 Keywords: Amazonia, Neotropics, Sexual dimorphism, Systematics, Taxonomy. Online version ISSN 1982-0224 Print version ISSN 1679-6225 1 Department of Ichthyology, Division of Vertebrate Zoology, American Museum of Natural History, Central Park West at 79th Neotrop. Ichthyol. Street, 10024-5192 New York, NY, USA. [email protected] 2 Department of Biology, University of Louisiana at Lafayette, P.O. -
What Can Vigilance Tell Us About Fear?
Beauchamp, Guy (2017) What can vigilance tell us about fear?. Animal Sentience 15(1) DOI: 10.51291/2377-7478.1203 This article has appeared in the journal Animal Sentience, a peer-reviewed journal on animal cognition and feeling. It has been made open access, free for all, by WellBeing International and deposited in the WBI Studies Repository. For more information, please contact [email protected]. Animal Sentience 2017.015: Beauchamp on Fear & Vigilance Call for Commentary: Animal Sentience publishes Open Peer Commentary on all accepted target articles. Target articles are peer-reviewed. Commentaries are editorially reviewed. There are submitted commentaries as well as invited commentaries. Commentaries appear as soon as they have been reviewed, revised and accepted. Target article authors may respond to their commentaries individually or in a joint response to multiple commentaries. Instructions: http://animalstudiesrepository.org/animsent/guidelines.html What can vigilance tell us about fear? Guy Beauchamp Independent Researcher, Canada Abstract: Animal vigilance is concerned with the monitoring of potential threats caused by predators and conspecifics. Researchers have argued that threats are part of a landscape of fear tracking the level of risk posed by predators and conspecifics. Vigilance, which is expected to vary with the level of risk, could thus be used as a measure of fear. Here, I explore the relationship between vigilance and fear caused by predators and conspecifics. The joint occurrence of vigilance and other physiological responses to fear, such as increased heart rate and stress hormone release, would bolster the idea that vigilance can be a useful marker of fear. While there is some support for a positive relationship between vigilance and physiological correlates of fear, a common theme in much of the empirical research is that vigilance and physiological correlates of fear are often uncoupled. -
Lundiana 6-2 2006.P65
Lundiana 6(2):121-149, 2005 © 2005 Instituto de Ciências Biológicas - UFMG ISSN 1676-6180 Análise cladística dos caracteres de anatomia externa e esquelética de Apteronotidae (Teleostei: Gymnotyiformes) Mauro L. Triques Departamento de Zoologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais. Av. Antônio Carlos 6627, Pampulha, 31270- 901, Belo Horizonte, MG, Brasil. E-mail: [email protected] Abstract Cladistic analysis of external morphology and skeletal characters of Apteronotidae (Teleostei: Gymnotyiformes). Cladistic analysis of external morphology and skeletal characters was undertaken for 37 species of Apteronotidae, Neotropical electric fishes. Orthosternarchus + Sternarchorhamphus (included here in Sternarchorhamphinae status novo) are proposed to be the sister taxa to all remaining apteronotids, most of which form a basal polytomy in Apteronotinae. Several apteronotid species are currently incertae sedis but the monophyly of several genera were corroborated. Sternarchorhynchus is proposed to be the sister group of Ubidia magdalensis + Platyurosternarchus macrostomus, together forming the Sternarchorhynchini. Snout elongation was revealed to have occurred in several independent evolutionary lines as the Sternar- chorhynchini, Orthosternarchus and Sternarchorhamphus. Apteronotus is restricted here to A. albifrons + A. jurubidae and postulated to be the sister group to Parapteronotus, which includes P. hasemani + P. macrostomus. “Apteronotus” leptorhynchus is postulated to be the sister group to “Apteronotus” -
Phylogenetic Comparative Analysis of Electric Communication Signals in Ghost Knifefishes (Gymnotiformes: Apteronotidae) Cameron R
4104 The Journal of Experimental Biology 210, 4104-4122 Published by The Company of Biologists 2007 doi:10.1242/jeb.007930 Phylogenetic comparative analysis of electric communication signals in ghost knifefishes (Gymnotiformes: Apteronotidae) Cameron R. Turner1,2,*, Maksymilian Derylo3,4, C. David de Santana5,6, José A. Alves-Gomes5 and G. Troy Smith1,2,7 1Department of Biology, 2Center for the Integrative Study of Animal Behavior (CISAB) and 3CISAB Research Experience for Undergraduates Program, Indiana University, Bloomington, IN 47405, USA, 4Dominican University, River Forest, IL 60305, USA, 5Laboratório de Fisiologia Comportamental (LFC), Instituto Nacional de Pesquisas da Amazônia (INPA), Manaus, AM 69083-000, Brazil, 6Smithsonian Institution, National Museum of Natural History, Division of Fishes, Washington, DC 20560, USA and 7Program in Neuroscience, Indiana University, Bloomington, IN 47405, USA *Author for correspondence (e-mail: [email protected]) Accepted 30 August 2007 Summary Electrocommunication signals in electric fish are diverse, species differences in these signals, chirp amplitude easily recorded and have well-characterized neural control. modulation, frequency modulation (FM) and duration were Two signal features, the frequency and waveform of the particularly diverse. Within this diversity, however, electric organ discharge (EOD), vary widely across species. interspecific correlations between chirp parameters suggest Modulations of the EOD (i.e. chirps and gradual frequency that mechanistic trade-offs may shape some aspects of rises) also function as active communication signals during signal evolution. In particular, a consistent trade-off social interactions, but they have been studied in relatively between FM and EOD amplitude during chirps is likely to few species. We compared the electrocommunication have influenced the evolution of chirp structure. -
Data Supporting Phylogenetic Reconstructions of the Neotropical Clade Gymnotiformes
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Data in Brief 7 (2016) 23–59 Contents lists available at ScienceDirect Data in Brief journal homepage: www.elsevier.com/locate/dib Data article Data supporting phylogenetic reconstructions of the Neotropical clade Gymnotiformes Victor A. Tagliacollo a,b,n, Maxwell J. Bernt b, Jack M. Craig b, Claudio Oliveira a, James S. Albert b a Universidade Estadual Paulista – UNESP, Instituto de Biociências de Botucatu, Botucatu, SP 18618-970, Brazil b University of Louisiana at Lafayette, Department of Biology, Lafayette, LA 70504-2451, USA article info abstract Article history: Data is presented in support of model-based total evidence (MBTE) Received 20 November 2015 phylogenetic reconstructions of the Neotropical clade of Gymnoti- Received in revised form formes “Model-based total evidence phylogeny of Neotropical electric 26 January 2016 knifefishes (Teleostei, Gymnotiformes)” (Tagliacollo et al., 2016) [1]). Accepted 30 January 2016 The MBTE phylogenies were inferred using a comprehensive dataset Available online 6 February 2016 comprised of six genes (5277 bp) and 223 morphological characters for an ingroup taxon sample of 120 of 218 valid species and 33 of the 34 extant genera. The data in this article include primer sequences for gene amplification and sequencing, voucher information and Gen- Bank accession numbers, descriptions of morphological characters, morphological synapomorphies for the recognized clades of Gym- notiformes, a supermatrix comprised of concatenated molecular and morphological data, and computer scripts to replicate MBTE infer- ences. We also included here Maximum-likelihood and Bayesian topologies, which support two main gymnotiform clades: Gymnoti- dae and Sternopygoidei, the latter comprised of Rhamphichthyoidea (RhamphichthyidaeþHypopomidae) and Sinusoidea (Sternopygi- daeþApteronotidae). -
Separability of Drag and Thrust in Undulatory Animals and Machines
OPEN Separability of drag and thrust in SUBJECT AREAS: undulatory animals and machines FLUID DYNAMICS Rahul Bale1*, Anup A. Shirgaonkar1*, Izaak D. Neveln2, Amneet Pal Singh Bhalla1, Malcolm A. MacIver1,2,3 MECHANICAL ENGINEERING & Neelesh A. Patankar1 Received 1Department of Mechanical Engineering, Northwestern University, 2Department of Biomedical Engineering, Northwestern 9 June 2014 University, 3Department of Neurobiology, Northwestern University, 2145 Sheridan Road, Evanston, IL 60208, USA. Accepted 4 November 2014 For nearly a century, researchers have tried to understand the swimming of aquatic animals in terms of a balance between the forward thrust from swimming movements and drag on the body. Prior approaches Published have failed to provide a separation of these two forces for undulatory swimmers such as lamprey and eels, 10 December 2014 where most parts of the body are simultaneously generating drag and thrust. We nonetheless show that this separation is possible, and delineate its fundamental basis in undulatory swimmers. Our approach unifies a vast diversity of undulatory aquatic animals (anguilliform, sub-carangiform, gymnotiform, bal-istiform, Correspondence and rajiform) and provides design principles for highly agile bioinspired underwater vehicles. This approach has practical utility within biology as well as engineering. It is a predictive tool for use in understanding the role requests for materials of the mechanics of movement in the evolutionary emergence of morphological features relating to should be addressed to locomotion. For example, we demonstrate that the drag-thrust separation framework helps to predict the N.A.P. (n-patankar@ observed height of the ribbon fin of electric knifefish, a diverse group of neotropical fish which are an northwestern.edu) or important model system in sensory neurobiology. -
The Life of Apteronotus Rostratus in the Wild
The Life of Apteronotus rostratus, a Panamanian Species of Weakly Electric Fish: A Field Study Jan Gogarten McGill University Panamá Field Study Semester 2008 Independent Project - ENVR 451 Host Laboratories: Eldredge Bermingham [email protected] Smithsonian Tropical Research Institute Apartado Postal 0843-03092 Balboa, Ancon, Republic of Panama Rüdiger Krahe [email protected] McGill University - Department of Biology 1205 Docteur Penfield Montreal, Quebec H3A 1B1 Gogarten 2 TABLE OF CONTENTS I. Executive Summary i. English p. 3 ii. Español p. 4 II. Host Information p. 5 III. Introduction p. 6 - 11 IV. Methodology p. 11 - 18 V. Results p. 18 - 30 VI. Discussion p. 31– 33 VII. Limitations and Problems p. 33 VIII. Acknowledgements/Reconocimientos p. 34 IX. Bibliography p. 35-36 X. Appendix i. Budget p. 37 ii. Chronogram of Activities p. 38-39 Gogarten 3 I. EXECUTIVE SUMMARY ENGLISH: This study sought to provide insight into the life of Apteronotus rostratus, a species of weakly electric fish encountered in the rivers of Panama. Weakly electric fish have had their ability to actively generate electricity to sense their environment extensively studied in the laboratory, but little is known about their lives in the wild. A suitable study site was found at Piriati, in the Bayano region, where numerous Apteronotus rostratus were found in the river on an initial field outing. In order to fill the knowledge void about Apteronotus rostratus in the wild, four 200m transects were conducted in the Piriati river, and the location, habitat and frequency of every individual was taken (for a total of 240 Apteronotus rostratus sampled).