Cichlasoma Urophthalmus Global
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A Tale of Two Herichthys
MISCELLANEOUS PUBLICATIONS MUSEUM OF ZOOLOGY, UNIVERSITY OF MICHIGAN, NO. 209(1): 1-18 LIVE COLOR PATTERNS DIAGNOSE SPECIES: A TALE OF TWO HERICHTHYS By RONALD G. OLDFIELD1,2, ABHINAV KAKUTURU1, 2 3 4 WILLIAM I. LUTTERSCHMIDT , O. TOM LORENZ , ADAM E. COHEN , AND DEAN A. HENDRICKSON4 Department of Ecology and Evolutionary Biology and Museum of Zoology University of Michigan Ann Arbor, Michigan 48109–1079, USA Ann Arbor, April 27, 2021 ISSN 0076-8406 JOHN LUNDBERG1, EDITOR GERALD SMITH2, EDITOR MACKENZIE SCHONDELMAYER2, COMPOSITOR 1Department of Ichthyology, The Academy of Natural Sciences of Drexel University, Philadelphia, PA 19103 2Museum of Zoology, University of Michigan, Ann Arbor, MI 48197 LIVE COLOR PATTERNS DIAGNOSE SPECIES: A TALE OF TWO HERICHTHYS By RONALD G. OLDFIELD1,2, ABHINAV KAKUTURU1, WILLIAM I. LUTTERSCHMIDT2, O. TOM LORENZ3, ADAM E. COHEN4, AND DEAN A. HENDRICKSON4 ABSTRACT The Rio Grande Cichlid, Herichthys cyanoguttatus, is native to the drainages of the Gulf Coast of northern Mexico and southern Texas and has been introduced at several sites in the US. Previous observations have suggested that non-native populations in Louisiana that are currently recognized as H. cyanoguttatus resemble another species, the Lowland Cichlid, H. carpintis. Traditional morphological and genetic techniques have been insufficient to differentiate these species, but H. carpintis has been reported to differ fromH. cyanoguttatus in color pattern, so we turned to novel electronic photo archives to determine the identity of the species introduced in Louisiana. First, we used the public databases Nonindigenous Aquatic Species Database and Fishes of Texas to infer the historical distributions of these species in the US. -
§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
USF Board of Trustees ( March 7, 2013)
Agenda item: (to be completed by Board staff) USF Board of Trustees ( March 7, 2013) Issue: Proposed Ph.D. in Integrative Biology ________________________________________________________________ Proposed action: New Degree Program Approval ________________________________________________________________ Background information: This application for a new Ph.D is driven by a recent reorganization of the Department of Biology. The reorganization began in 2006 and was completed in 2009. The reorganization of the Department of Biology, in part, reflected the enormity of the biological sciences, and in part, different research perspectives and directions taken by the faculty in each of the respective areas of biology. Part of the reorganization was to replace the original Ph.D. in Biology with two new doctoral degrees that better serve the needs of the State and our current graduate students by enabling greater focus of the research performed to earn the Ph.D. The well-established and highly productive faculty attracts students to the Tampa Campus from all over the United States as well as from foreign countries. The resources to support the two Ph.D. programs have already been established in the Department of Biology and are sufficient to support the two new degree programs. The reorganization created two new departments; the Department of Cell Biology, Microbiology, and Molecular Biology (CMMB) and the Department of Integrative Biology (IB). This proposal addresses the creation of a new Ph.D., in Integrative Biology offered by the Department of Integrative Biology (CIP Code 26.1399). The name of the Department, Integrative Biology, reflects the belief that the study of biological processes and systems can best be accomplished by the incorporation of numerous integrated approaches Strategic Goal(s) Item Supports: The proposed program directly supports the following: Goal 1 and Goal 2 Workgroup Review: ACE March 7, 2013 Supporting Documentation: See Complete Proposal below Prepared by: Dr. -
Selection, Constraint, and Adaptation in the Visual Genes of Neotropical Cichlid Fishes and Other Vertebrates
SELECTION, CONSTRAINT, AND ADAPTATION IN THE VISUAL GENES OF NEOTROPICAL CICHLID FISHES AND OTHER VERTEBRATES by Frances Elisabeth Hauser A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Ecology and Evolutionary Biology University of Toronto © Copyright by Frances E. Hauser 2018 SELECTION, CONSTRAINT, AND ADAPTATION IN THE VISUAL GENES OF NEOTROPICAL CICHLID FISHES AND OTHER VERTEBRATES Frances E. Hauser Doctor of Philosophy, 2018 Department of Ecology and Evolutionary Biology University of Toronto 2018 ABSTRACT The visual system serves as a direct interface between an organism and its environment. Studies of the molecular components of the visual transduction cascade, in particular visual pigments, offer an important window into the relationship between genetic variation and organismal fitness. In this thesis, I use molecular evolutionary models as well as protein modeling and experimental characterization to assess the role of variable evolutionary rates on visual protein function. In Chapter 2, I review recent work on the ecological and evolutionary forces giving rise to the impressive variety of adaptations found in visual pigments. In Chapter 3, I use interspecific vertebrate and mammalian datasets of two visual genes (RH1 or rhodopsin, and RPE65, a retinoid isomerase) to assess different methods for estimating evolutionary rate across proteins and the reliability of inferring evolutionary conservation at individual amino acid sites, with a particular emphasis on sites implicated in impaired protein function. ii In Chapters 4, and 5, I narrow my focus to devote particular attention to visual pigments in Neotropical cichlids, a highly diverse clade of fishes distributed across South and Central America. -
Hemichromis Bimaculatus (African Jewelfish)
African Jewelfish (Hemichromis bimaculatus) Ecological Risk Screening Summary U.S. Fish and Wildlife Service, April 2011 Revised, September 2018 Web Version, 2/14/2019 Photo: Zhyla. Licensed under CC BY-SA 3.0. Available: https://commons.wikimedia.org/wiki/File:Hemichromis_bimaculatus1.jpg. (September 2018). 1 Native Range and Status in the United States Native Range From Froese and Pauly (2018): “Africa: widely distributed in West Africa, where it is known from most hydrographic basins [Teugels and Thys van den Audenaerde 2003], associated with forested biotopes [Daget and Teugels 1991, Lamboj 2004]. Also reported from coastal basins of Cameroon, Democratic Republic of the Congo and Nile basin [Teugels and Thys van den Audenaerde 1992], but at least its presence in Cameroon is unconfirmed in [Stiassny et al. 2008]. [Lamboj 2004] limits this species to Guinea, Sierra Leone and Liberia.” 1 From Azeroual and Lalèyè (2010): “This species is widely distributed throughout western Africa, but has also been recorded from Algeria to Egypt.” “Northern Africa: Within this region this species is very rare. It used to be caught from the coastal lagoons, especially Lake Mariut (Egypt) and Algeria. Its [sic] found in Tunisia in the wadis of Kebili in the south of Tunisia and in wadis near Chott Melrhir in eastern Algeria (Kraiem, pers. comm.), and Egypt (Wadi El Rayan Lakes).” “Western Africa: It is known from most hydrographic basins in western Africa.” Status in the United States It is not certain if this species is present in the United States, or if records pertain to H. letourneuxi. From NatureServe (2018): “Introduced and established in Dade County, Florida, […] (Nelson 1983).” From Nico et al. -
Mayan Cichlid (Cichlasoma Urophthalmum) Ecological Risk Screening Summary
U.S. Fish and Wildlife Service Mayan Cichlid (Cichlasoma urophthalmum) Ecological Risk Screening Summary Web Version – 11/01/2012 Photo: Alexander Calder 1 Native Range, and Status in the United States Native Range From Robins (2001): The Mayan cichlid is native to the Central American Atlantic slope waters of southeastern Mexico (including the Yucatán Peninsula), Belize, Guatemala, Honduras, and Nicaragua. Nonindigenous Occurrences From Schofield et al. (2011): “This species was first documented in Florida when specimens were observed and collected and observed in Everglades National Park in 1983; it is established in several areas in and around the park (Loftus 1987; Lorenz et al. 1997; Smith-Vaniz, personal communication [not cited]; Tilmant 1999) and Big Cypress National Preserve (Nico, unpublished data; Tilmant 1999).” “On the east side of Florida it has been recorded from Canal C-111 north to the Little River Canal (C-7 Canal) (Shafland 1995).” Cichlasoma urophthalmus Ecological Risk Screening Summary U.S. Fish and Wildlife Service – Web Version – 11/1/2012 “A single specimen was taken from a rock pit in Manatee County in October 1975 (Smith- Vaniz, personal communication [not cited]).” “Mayan ciclids have also been collected in Lake Okeechobee and Lake Osbourne, Palm Beach County in 2003 (Cocking 2003; Werner 2003).” “A new population was found in Charlotte Harbor in the summer of 2003 (Adams and Wolfe 2007; Associated Press 2003; Charlotte Harbor NEP 2004; Byrley, personal communication [not cited]). This is the most northern population known.” Reported established in Florida Panther National Wildlife Refuge (2005).” “A specimen was collected in Holiday Park in Broward County (International Game Fishing Association 2000).” “In 2006, this species was found to be established in Mobbly Bayou in Tampa Bay and in canals on Merritt Island in 2007 (Paperno et al. -
Ecology of the Mayan Cichlid, Cichlasoma Urophthalmus Günther, in the Alvarado Lagoonal System, Veracruz, Mexico
Gulf and Caribbean Research Volume 17 Issue 1 January 2005 Ecology of the Mayan Cichlid, Cichlasoma urophthalmus Günther, in the Alvarado Lagoonal System, Veracruz, Mexico Rafael Chavez-Lopez Universidad Nacional Autonoma de Mexico Mark S. Peterson University of Southern Mississippi, [email protected] Nancy J. Brown-Peterson University of Southern Mississippi, [email protected] Ana Adalia Morales-Gomez Universidad Nacional Autonoma de Mexico See next page for additional authors Follow this and additional works at: https://aquila.usm.edu/gcr Part of the Marine Biology Commons Recommended Citation Chavez-Lopez, R., M. S. Peterson, N. J. Brown-Peterson, A. Morales-Gomez and J. Franco-Lopez. 2005. Ecology of the Mayan Cichlid, Cichlasoma urophthalmus Günther, in the Alvarado Lagoonal System, Veracruz, Mexico. Gulf and Caribbean Research 17 (1): 123-131. Retrieved from https://aquila.usm.edu/gcr/vol17/iss1/13 DOI: https://doi.org/10.18785/gcr.1701.13 This Article is brought to you for free and open access by The Aquila Digital Community. It has been accepted for inclusion in Gulf and Caribbean Research by an authorized editor of The Aquila Digital Community. For more information, please contact [email protected]. Ecology of the Mayan Cichlid, Cichlasoma urophthalmus Günther, in the Alvarado Lagoonal System, Veracruz, Mexico Authors Rafael Chavez-Lopez, Universidad Nacional Autonoma de Mexico; Mark S. Peterson, University of Southern Mississippi; Nancy J. Brown-Peterson, University of Southern Mississippi; Ana Adalia Morales- Gomez, Universidad Nacional Autonoma de Mexico; and Jonathan Franco-Lopez, Universidad Nacional Autonoma de Mexico This article is available in Gulf and Caribbean Research: https://aquila.usm.edu/gcr/vol17/iss1/13 Book for Press.qxp 2/28/05 3:30 PM Page 123 Gulf and Caribbean Research Vol 17, 123–131, 2005 Manuscript received July 18, 2004; accepted September 20, 2004 ECOLOGY OF THE MAYAN CICHLID, CICHLASOMA UROPHTHALMUS GÜNTHER, IN THE ALVARADO LAGOONAL SYSTEM, VERACRUZ, MEXICO Rafael Chávez-López, Mark S. -
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CICHLIFORMES: Cichlidae (part 3) · 1 The ETYFish Project © Christopher Scharpf and Kenneth J. Lazara COMMENTS: v. 6.0 - 30 April 2021 Order CICHLIFORMES (part 3 of 8) Family CICHLIDAE Cichlids (part 3 of 7) Subfamily Pseudocrenilabrinae African Cichlids (Haplochromis through Konia) Haplochromis Hilgendorf 1888 haplo-, simple, proposed as a subgenus of Chromis with unnotched teeth (i.e., flattened and obliquely truncated teeth of H. obliquidens); Chromis, a name dating to Aristotle, possibly derived from chroemo (to neigh), referring to a drum (Sciaenidae) and its ability to make noise, later expanded to embrace cichlids, damselfishes, dottybacks and wrasses (all perch-like fishes once thought to be related), then beginning to be used in the names of African cichlid genera following Chromis (now Oreochromis) mossambicus Peters 1852 Haplochromis acidens Greenwood 1967 acies, sharp edge or point; dens, teeth, referring to its sharp, needle-like teeth Haplochromis adolphifrederici (Boulenger 1914) in honor explorer Adolf Friederich (1873-1969), Duke of Mecklenburg, leader of the Deutsche Zentral-Afrika Expedition (1907-1908), during which type was collected Haplochromis aelocephalus Greenwood 1959 aiolos, shifting, changing, variable; cephalus, head, referring to wide range of variation in head shape Haplochromis aeneocolor Greenwood 1973 aeneus, brazen, referring to “brassy appearance” or coloration of adult males, a possible double entendre (per Erwin Schraml) referring to both “dull bronze” color exhibited by some specimens and to what -
Summary Report of Freshwater Nonindigenous Aquatic Species in U.S
Summary Report of Freshwater Nonindigenous Aquatic Species in U.S. Fish and Wildlife Service Region 4—An Update April 2013 Prepared by: Pam L. Fuller, Amy J. Benson, and Matthew J. Cannister U.S. Geological Survey Southeast Ecological Science Center Gainesville, Florida Prepared for: U.S. Fish and Wildlife Service Southeast Region Atlanta, Georgia Cover Photos: Silver Carp, Hypophthalmichthys molitrix – Auburn University Giant Applesnail, Pomacea maculata – David Knott Straightedge Crayfish, Procambarus hayi – U.S. Forest Service i Table of Contents Table of Contents ...................................................................................................................................... ii List of Figures ............................................................................................................................................ v List of Tables ............................................................................................................................................ vi INTRODUCTION ............................................................................................................................................. 1 Overview of Region 4 Introductions Since 2000 ....................................................................................... 1 Format of Species Accounts ...................................................................................................................... 2 Explanation of Maps ................................................................................................................................ -
Copyright by Laura Elizabeth Dugan 2014
Copyright by Laura Elizabeth Dugan 2014 The Dissertation Committee for Laura Elizabeth Dugan Certifies that this is the approved version of the following dissertation: Invasion Risk and Impacts of a Popular Aquarium Trade Fish and the Implications for Policy and Conservation Management Committee: Dean Hendrickson, Supervisor Camille Parmesan, Co-Supervisor Hans Hofmann Mathew Leibold Mary Poteet Invasion Risk and Impacts of a Popular Aquarium Trade Fish and the Implications for Policy and Conservation Management by Laura Elizabeth Dugan, B.S. Dissertation Presented to the Faculty of the Graduate School of The University of Texas at Austin in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy The University of Texas at Austin May 2014 Dedication This dissertation is dedicated to my family, fellow pursuers of knowledge, who have always encouraged, motivated and supported me and my academic interests. I could not have come this far without you. "The idea of wilderness needs no defense. It only needs more defenders." Edward Abbey Acknowledgements I would like to thank my advisor Dean Hendrickson for the opportunity to work on this interesting topic in such a beautiful place. I would also like to thank my advisors Dean Hendrickson and Camille Parmesan, my committee members Hans Hofmann, Mathew Leibold and Mary Poteet and the Parmesan lab members for all their support and invaluable input on this work. In addition, without the assistance of my colleagues in Cuatro Ciénegas as well as several undergraduate students -
Rapid Evolution and Selection Inferred from the Transcriptomes of Sympatric Crater Lake Cichlid Fishes
Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes K. R. ELMER, S. FAN, H. M. GUNTER, J. C. JONES, S. BOEKHOFF, S. KURAKU and A. MEYER Lehrstuhl fUr Zoologie und Evolutionsbiologie, Department of Biology, University of Konstanz, Universitiitstrasse 10, 78457 Konstanz, Germany Abstract Crater lakes provide a natural laboratory to study speciation of cichlid fishes by ecological divergence. Up to now, there has been a dearth of transcriptomic and genomic information that would aid in understanding the molecular basis of the phenotypic differentiation between young species. We used next-generation sequencing (Roche 454 massively parallel pyrosequencing) to characterize the diversity of expressed sequence tags between ecologically divergent, endemic and sympatric species of cichlid fishes from crater lake Apoyo, Nicaragua: benthic Amphilophus astorquii and limnetic Amphilophus zaliosus. We obtained 24174 A. astorquii and 21382 A. zaliosus high quality expressed sequence tag contigs, of which 13 106 pairs are orthologous between species. Based on the ratio of non synonymous to synonymous substitutions, we identified six sequences exhibiting signals of strong diversifying selection (KalKs > 1). These included genes involved in biosynthesis, metabolic processes and development. This transcriptome sequence variation may be reflective of natural selection acting on the genomes of these young, sympatric sister species. Based on Ks ratios and p-distances between 3'-untranslated regions (UTRs) calibrated to previously published species divergence times, we estimated a neutral transcriptome-wide substitutional mutation rate of ~1.25 x 10-6 per site per year. We conclude that next-generation sequencing technologies allow us to infer natural selection acting to diversify the genomes of young species, such as crater lake cichlids, with much greater scope than previously possible. -
Vertebrate Zoology 60 (1) 2010 19 19 – 25 © Museum Für Tierkunde Dresden, ISSN 1864-5755, 18.05.2010
Vertebrate Zoology 60 (1) 2010 19 19 – 25 © Museum für Tierkunde Dresden, ISSN 1864-5755, 18.05.2010 Australoheros capixaba, a new species of Australoheros from south-eastern Brazil (Labroidei: Cichlidae: Cichlasomatinae) FELIPE P. OTTONI Laboratório de Ictiologia Geral e Aplicada, Departamento de Zoologia, Universidade Federal do Rio de Janeiro Cidade Universitária, CEP 21994-970, Caixa Postal 68049, Rio de Janeiro, RJ, Brazil fpottoni(at)yahoo.com.br Received on November 13, 2009, accepted on February 14, 2010. Published online at www.vertebrate-zoology.de on May 12, 2010. > Abstract Australoheros capixaba, new species, is distributed along the rio Itaúnas, rio Barra Seca, rio São Mateus and the lower rio Doce basins. The new species is distinguished from its congeners in the rio Paraná-Uruguay system and Laguna dos Patos system by having 12 caudal vertebrae (vs. 13 – 15). Australoheros capixaba differs from the other species of Australoheros from south-eastern Brazil by its coloration in life (a reddish chest, large spots on the dorsal region of the trunk and a green iridescence on the pelvic fi ns). It also differs from some of its congeners by having a longer caudal peduncle, a longer anal- fi n spine, fewer dorsal-fi n spines and fewer anal-fi n rays. Australoheros capixaba sp. n. is the fi rst species from the genus described for the Estado do Espírito Santo, south-eastern Brazil. The phylogenetic placement of the species in the genus cannot be discussed, because there is no phylogenetic work about the Australoheros species from south-eastern Brazil. > Resumo Australoheros capixaba, nova espécie, se distribui ao longo das bacias do rio Itaúnas, rio Barra Seca, rio São Mateus e baixo rio Doce.