This Article Was Published in an Elsevier Journal. the Attached Copy Is Furnished to the Author for Non-Commercial Research
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
For Review Only 377 Algomyces Stechlinensis Clustered Together with Environmental Clones from a Eutrophic 378 Lake in France (Jobard Et Al
Journal of Eukaryotic Microbiology Page 18 of 43 1 Running head: Parasitic chytrids of volvocacean algae. 2 3 Title: Diversity and Hidden Host Specificity of Chytrids infecting Colonial 4 Volvocacean Algae. 5 Authors: Silke Van den Wyngaerta, Keilor Rojas-Jimeneza,b, Kensuke Setoc, Maiko Kagamic, 6 Hans-Peter Grossarta,d 7 a Department of ExperimentalFor Limnology, Review Leibniz-Institute Only of Freshwater Ecology and Inland 8 Fisheries, Alte Fischerhuette 2, D-16775 Stechlin, Germany 9 b Universidad Latina de Costa Rica, Campus San Pedro, Apdo. 10138-1000, San Jose, Costa Rica 10 c Department of Environmental Sciences, Faculty of Science, Toho University, Funabashi, Chiba, 11 Japan 12 d Institute of Biochemistry and Biology, Potsdam University, Maulbeerallee 2, 14476 Potsdam, 13 Germany 14 15 Corresponding Author: 16 Silke Van den Wyngaert, Department of Experimental Limnology, Leibniz-Institute of 17 Freshwater Ecology and Inland Fisheries, Alte Fischerhuette 2, D-16775 Stechlin, Germany 18 Telephone number: +49 33082 69972; Fax number: +49 33082 69917; e-mail: [email protected], 19 [email protected] 20 21 22 23 1 Page 19 of 43 Journal of Eukaryotic Microbiology 24 ABSTRACT 25 Chytrids are zoosporic fungi that play an important, but yet understudied, ecological role in 26 aquatic ecosystems. Many chytrid species have been morphologically described as parasites on 27 phytoplankton. However, the majority of them have rarely been isolated and lack DNA sequence 28 data. In this study we isolated and cultivated three parasitic chytrids, infecting a common 29 volvocacean host species, Yamagishiella unicocca. In order to identify the chytrids, we 30 characterized morphology and life cycle, and analyzed phylogenetic relationships based on 18S 31 and 28S rDNA genes. -
Group of Microorganisms at the Animal-Fungal Boundary
16 Aug 2002 13:56 AR AR168-MI56-14.tex AR168-MI56-14.SGM LaTeX2e(2002/01/18) P1: GJC 10.1146/annurev.micro.56.012302.160950 Annu. Rev. Microbiol. 2002. 56:315–44 doi: 10.1146/annurev.micro.56.012302.160950 First published online as a Review in Advance on May 7, 2002 THE CLASS MESOMYCETOZOEA: A Heterogeneous Group of Microorganisms at the Animal-Fungal Boundary Leonel Mendoza,1 John W. Taylor,2 and Libero Ajello3 1Medical Technology Program, Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing Michigan, 48824-1030; e-mail: [email protected] 2Department of Plant and Microbial Biology, University of California, Berkeley, California 94720-3102; e-mail: [email protected] 3Centers for Disease Control and Prevention, Mycotic Diseases Branch, Atlanta Georgia 30333; e-mail: [email protected] Key Words Protista, Protozoa, Neomonada, DRIP, Ichthyosporea ■ Abstract When the enigmatic fish pathogen, the rosette agent, was first found to be closely related to the choanoflagellates, no one anticipated finding a new group of organisms. Subsequently, a new group of microorganisms at the boundary between an- imals and fungi was reported. Several microbes with similar phylogenetic backgrounds were soon added to the group. Interestingly, these microbes had been considered to be fungi or protists. This novel phylogenetic group has been referred to as the DRIP clade (an acronym of the original members: Dermocystidium, rosette agent, Ichthyophonus, and Psorospermium), as the class Ichthyosporea, and more recently as the class Mesomycetozoea. Two orders have been described in the mesomycetozoeans: the Der- mocystida and the Ichthyophonida. So far, all members in the order Dermocystida have been pathogens either of fish (Dermocystidium spp. -
A New Flagellated Dispersion Stage in Paraphysoderma Sedebokerense, a Pathogen of Haematococcus Pluvialis
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Springer - Publisher Connector J Appl Phycol (2016) 28:1553–1558 DOI 10.1007/s10811-015-0700-8 A new flagellated dispersion stage in Paraphysoderma sedebokerense, a pathogen of Haematococcus pluvialis Martina Strittmatter1 & Tiago Guerra 2 & Joana Silva2 & Claire M. M. Gachon1 Received: 31 July 2015 /Revised and accepted: 24 August 2015 /Published online: 18 October 2015 # The Author(s) 2015. This article is published with open access at Springerlink.com Abstract The blastocladialean fungus Paraphysoderma environmental conditions. They are therefore a prime target sedebokerense Boussiba, Zarka and James is a devastating for the development of disease management protocols in in- pathogen of the commercially valuable green microalga dustrial cultivation facilities, a goal which requires a detailed Haematococcus pluvialis, a natural source of the carotenoid understanding of their physiology. pigment astaxanthin. First identified in commercial Haematococcus cultivation facilities, P. sedebokerense is Keywords Pathogen . Green alga . Blastocladiales . hypothesised to have a complex life cycle that switches be- Zoospores . Amoebae . Flagellum . Life cycle tween a vegetative and a resting phase depending on favourable or unfavourable growth conditions. Rather unusu- ally for blastocladialean fungi, P. sedebokerense was de- scribed as lacking flagellated zoospores and only propagating Introduction via aplanosporic amoeboid cells. However, during repeated -
Downloaded from by IP: 199.133.24.106 On: Mon, 18 Sep 2017 10:43:32 Spatafora Et Al
UC Riverside UC Riverside Previously Published Works Title The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies. Permalink https://escholarship.org/uc/item/4485m01m Journal Microbiology spectrum, 5(5) ISSN 2165-0497 Authors Spatafora, Joseph W Aime, M Catherine Grigoriev, Igor V et al. Publication Date 2017-09-01 DOI 10.1128/microbiolspec.funk-0053-2016 License https://creativecommons.org/licenses/by-nc-nd/4.0/ 4.0 Peer reviewed eScholarship.org Powered by the California Digital Library University of California The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies JOSEPH W. SPATAFORA,1 M. CATHERINE AIME,2 IGOR V. GRIGORIEV,3 FRANCIS MARTIN,4 JASON E. STAJICH,5 and MEREDITH BLACKWELL6 1Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331; 2Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907; 3U.S. Department of Energy Joint Genome Institute, Walnut Creek, CA 94598; 4Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 Interactions Arbres/Microorganismes, Laboratoire d’Excellence Recherches Avancés sur la Biologie de l’Arbre et les Ecosystèmes Forestiers (ARBRE), Centre INRA-Lorraine, 54280 Champenoux, France; 5Department of Plant Pathology and Microbiology and Institute for Integrative Genome Biology, University of California–Riverside, Riverside, CA 92521; 6Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803 and Department of Biological Sciences, University of South Carolina, Columbia, SC 29208 ABSTRACT The kingdom Fungi is one of the more diverse INTRODUCTION clades of eukaryotes in terrestrial ecosystems, where they In 1996 the genome of Saccharomyces cerevisiae was provide numerous ecological services ranging from published and marked the beginning of a new era in decomposition of organic matter and nutrient cycling to beneficial and antagonistic associations with plants and fungal biology (1). -
Diversity and Distribution of Unicellular Opisthokonts Along the European Coast Analyzed Using High-Throughput Sequencing
Diversity and distribution of unicellular opisthokonts along the European coast analyzed using high-throughput sequencing Javier del Campo1,2,*, Diego Mallo3, Ramon Massana4, Colomban de Vargas5,6, Thomas A. Richards7,8, and Iñaki Ruiz-Trillo1,9,10 1Institut de Biologia Evolutiva (CSIC-UPF), Passeig Marítim de la Barceloneta 37-49, 08003 Barcelona, Catalonia, Spain. 3Department of Biochemistry, Genetics and Immunology, University of Vigo, Vigo, Galicia, Spain 4Department of Marine Biology and Oceanography, Institut de Ciències del Mar (CSIC), Barcelona, Catalonia, Spain 5CNRS, UMR 7144, Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Roscoff, France 6UPMC Univ. Paris 06, UMR 7144, Station Biologique de Roscoff, Roscoff, France 7Geoffrey Pope Building, Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter, UK 8Canadian Institute for Advanced Research, CIFAR Program in Integrated Microbial Biodiversity 9Departament de Genètica, Universitat de Barcelona, Barcelona, Catalonia, Spain 10Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Catalonia, Spain Summary The opisthokonts are one of the major super-groups of eukaryotes. It comprises two major clades: 1) the Metazoa and their unicellular relatives and 2) the Fungi and their unicellular relatives. There is, however, little knowledge of the role of opisthokont microbes in many natural environments, especially among non-metazoan and non-fungal opisthokonts. Here we begin to address this gap by analyzing high throughput 18S rDNA and 18S rRNA sequencing data from different European coastal sites, sampled at different size fractions and depths. In particular, we analyze the diversity and abundance of choanoflagellates, filastereans, ichthyosporeans, nucleariids, corallochytreans and their related lineages. Our results show the great diversity of choanoflagellates in coastal waters as well as a relevant role of the ichthyosporeans and the uncultured marine opisthokonts (MAOP). -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
Controlled Sampling of Ribosomally Active Protistan Diversity in Sediment-Surface Layers Identifies Putative Players in the Marine Carbon Sink
The ISME Journal (2020) 14:984–998 https://doi.org/10.1038/s41396-019-0581-y ARTICLE Controlled sampling of ribosomally active protistan diversity in sediment-surface layers identifies putative players in the marine carbon sink 1,2 1 1 3 3 Raquel Rodríguez-Martínez ● Guy Leonard ● David S. Milner ● Sebastian Sudek ● Mike Conway ● 1 1 4,5 6 7 Karen Moore ● Theresa Hudson ● Frédéric Mahé ● Patrick J. Keeling ● Alyson E. Santoro ● 3,8 1,9 Alexandra Z. Worden ● Thomas A. Richards Received: 6 October 2019 / Revised: 4 December 2019 / Accepted: 17 December 2019 / Published online: 9 January 2020 © The Author(s) 2020. This article is published with open access Abstract Marine sediments are one of the largest carbon reservoir on Earth, yet the microbial communities, especially the eukaryotes, that drive these ecosystems are poorly characterised. Here, we report implementation of a sampling system that enables injection of reagents into sediments at depth, allowing for preservation of RNA in situ. Using the RNA templates recovered, we investigate the ‘ribosomally active’ eukaryotic diversity present in sediments close to the water/sediment interface. We 1234567890();,: 1234567890();,: demonstrate that in situ preservation leads to recovery of a significantly altered community profile. Using SSU rRNA amplicon sequencing, we investigated the community structure in these environments, demonstrating a wide diversity and high relative abundance of stramenopiles and alveolates, specifically: Bacillariophyta (diatoms), labyrinthulomycetes and ciliates. The identification of abundant diatom rRNA molecules is consistent with microscopy-based studies, but demonstrates that these algae can also be exported to the sediment as active cells as opposed to dead forms. -
Chytridiomycetes, Chytridiomycota)
VOLUME 5 JUNE 2020 Fungal Systematics and Evolution PAGES 17–38 doi.org/10.3114/fuse.2020.05.02 Taxonomic revision of the genus Zygorhizidium: Zygorhizidiales and Zygophlyctidales ord. nov. (Chytridiomycetes, Chytridiomycota) K. Seto1,2,3*, S. Van den Wyngaert4, Y. Degawa1, M. Kagami2,3 1Sugadaira Research Station, Mountain Science Center, University of Tsukuba, 1278-294, Sugadaira-Kogen, Ueda, Nagano 386-2204, Japan 2Department of Environmental Science, Faculty of Science, Toho University, 2-2-1, Miyama, Funabashi, Chiba 274-8510, Japan 3Graduate School of Environment and Information Sciences, Yokohama National University, 79-7, Tokiwadai, Hodogaya, Yokohama, Kanagawa 240- 8502, Japan 4Department of Experimental Limnology, Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Alte Fischerhuette 2, D-16775 Stechlin, Germany *Corresponding author: [email protected] Key words: Abstract: During the last decade, the classification system of chytrids has dramatically changed based on zoospore Chytridiomycota ultrastructure and molecular phylogeny. In contrast to well-studied saprotrophic chytrids, most parasitic chytrids parasite have thus far been only morphologically described by light microscopy, hence they hold great potential for filling taxonomy some of the existing gaps in the current classification of chytrids. The genus Zygorhizidium is characterized by an zoospore ultrastructure operculate zoosporangium and a resting spore formed as a result of sexual reproduction in which a male thallus Zygophlyctis and female thallus fuse via a conjugation tube. All described species of Zygorhizidium are parasites of algae and Zygorhizidium their taxonomic positions remain to be resolved. Here, we examined morphology, zoospore ultrastructure, host specificity, and molecular phylogeny of seven cultures of Zygorhizidium spp. Based on thallus morphology and host specificity, one culture was identified as Z. -
Project Summary
Curriculum Vitae T. Y. James TIMOTHY YONG JAMES Department of Ecology and Evolutionary Biology University of Michigan Ann Arbor, MI 48109, U.S.A. Telephone: +1-734-615-7753 Fax: +1-734-763-0544 e-mail: [email protected] webpage: www.umich.edu/~mycology RESEARCH INTERESTS My research covers multiples aspects of the evolutionary genetics of fungi. Particular research foci center around traits unique to fungi or for which fungi make excellent models. These include the genetics of multiallelic and multilocus mating systems, heterokaryosis, spore dispersal strategies, population structure, mitotic recombination, and the evolution of virulence. I also study the fungal tree of life and its relationship to the evolution of phenotypes such as mating systems, morphology, and the genome. EDUCATION Ph.D. in Biology and Program in Cell and Molecular Biology (2003), Duke University, Durham, NC, USA B.Sc. in Botany (1996), University of Georgia, Athens, GA, USA PROFESSIONAL EXPERIENCE 2015- Lewis E. Wehmeyer and Elaine Prince Wehmeyer Professor of Fungal Taxonomy College of Literature Sciences and the Arts, University of Michigan, Ann Arbor, MI, USA 2015- Associate professor and associate curator of fungi, Dept. of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USA 2009-2015 Assistant professor and assistant curator of fungi, Dept. of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USA 2008 Postdoctoral researcher, Dept. of Biology, McMaster University, Hamilton, ON, Canada Advisor: Dr. Jianping Xu Genetic control of mitochondrial inheritance by the mating-type locus of the pathogenic yeast Cryptococcus neoformans. 2006-2007 Postdoctoral researcher, Dept. of Evolutionary Biology, Uppsala University & Dept. -
Index to Cecidology up to Vol. 31 (2016)
Index to Cecidology Up to Vol. 31 (2016) This index has been based on the contents of the papers rather than on their actual titles in order to facilitate the finding of papers on particular subjects. The figures following each entry are the year of publication, the volume and, in brackets, the number of the relevant issue. Aberbargoed Grasslands: report of 2011 field meeting 2012 27 (1) Aberrant Plantains 99 14(2) Acacia species galled by Fungi in India 2014 29(2) Acer gall mites (with illustrations) 2013 28(1) Acer galls: felt galls re-visited 2005 20(2) Acer saccharinum – possibly galled by Dasineura aceris new to Britain 2017 32(1) Acer seed midge 2009 24(1) Aceria anceps new to Ireland 2005 20 (1) Aceria geranii from North Wales 1999 14(2) Aceria heteronyx galling twigs of Norway Maple 2014 29(1) Aceria ilicis (gall mite) galling holm oak flowers in Brittany 1997 12(1) In Ireland 2010 25(1) Aceria mites on sycamore 2005 20(2) Aceria populi galling aspen in Scotland 2000 15(2) Aceria pterocaryae new to the British mite fauna 2008 23(2) Aceria rhodiolae galling roseroot 2013 28(1): 2016 31(1) Aceria rhodiolae in West Sutherland 2014 29(1) Aceria tristriata on Walnut 2007 22(2) Acericecis campestre sp. nov. on Field Maple 2004 19(2) Achillea ptarmica (sneezewort) galled by Macrosiphoniella millefolii 1993 8(2) Acorn galls on red oak 2014 29(1) Acorn stalks: peculiar elongation 2002 17(2) Aculops fuchsiae – a fuchsia-galling mite new to Britain 2008 23 (1) Aculus magnirostris new to Ireland 2005 20 (1) Acumyia acericola – the Acer seed -
Clade (Kingdom Fungi, Phylum Chytridiomycota)
TAXONOMIC STATUS OF GENERA IN THE “NOWAKOWSKIELLA” CLADE (KINGDOM FUNGI, PHYLUM CHYTRIDIOMYCOTA): PHYLOGENETIC ANALYSIS OF MOLECULAR CHARACTERS WITH A REVIEW OF DESCRIBED SPECIES by SHARON ELIZABETH MOZLEY (Under the Direction of David Porter) ABSTRACT Chytrid fungi represent the earliest group of fungi to have emerged within the Kingdom Fungi. Unfortunately despite the importance of chytrids to understanding fungal evolution, the systematics of the group is in disarray and in desperate need of revision. Funding by the NSF PEET program has provided an opportunity to revise the systematics of chytrid fungi with an initial focus on four specific clades in the order Chytridiales. The “Nowakowskiella” clade was chosen as a test group for comparing molecular methods of phylogenetic reconstruction with the more traditional morphological and developmental character system used for classification in determining generic limits for chytrid genera. Portions of the 18S and 28S nrDNA genes were sequenced for isolates identified to genus level based on morphology to seven genera in the “Nowakowskiella” clade: Allochytridium, Catenochytridium, Cladochytrium, Endochytrium, Nephrochytrium, Nowakowskiella, and Septochytrium. Bayesian, parsimony, and maximum likelihood methods of phylogenetic inference were used to produce trees based on one (18S or 28S alone) and two-gene datasets in order to see if there would be a difference depending on which optimality criterion was used and the number of genes included. In addition to the molecular analysis, taxonomic summaries of all seven genera covering all validly published species with a listing of synonyms and questionable species is provided to give a better idea of what has been described and the morphological and developmental characters used to circumscribe each genus. -
Atti Del Museo Di Storia Di Trieste
ATTI DEL MUSEOMUSEO CCIVICOIVICO DIDI STORSTORIAIA NATURALENATURALE DIDI TRTRIESTEIESTE naturale A I stor I D CO I V I C MUSEO DEL DEL I ATT TRIESTE 2014 VOVOL.L. 59 56 - -2018 2013 ATTI DEL MUSEO CIVICO DI STORIA NATURALE ATTI DI TRIESTE DEL MUSEO CIVICO DI STORIA NATURALE DI TRIESTE VOL. 59 - 2018 ISSN: 0335-1576 DIRIGENTE DIRETTORE RESPONSABILE DEL PERIODICO Laura Carlini Fanfogna COMITATO SCIENTIFICO Deborah Arbulla, paleontologia Pietro Brandmayr, entomologia Nicola Bressi, zoologia TRIESTEAndrea 2014 Colla, entomologia VOL. 56 - 2013 Guido Ferilli, botanica Pier Luigi Nimis, botanica REDAZIONE Livio Fogar con Gianni Pistrini Museo Civico di Storia Naturale via Tominz, 4 – 34139 Trieste – Italia Tel.: +39406758227/662 – Fax: +390406758230 E-mail: [email protected]; [email protected] www.retecivica.trieste.it/triestecultura/musei In copertina: Podarcis muralis ♂ Tolmezzo (foto di Gianluca Rassati) On the cover: Podarcis muralis ♂ Tolmezzo (photo of Gianluca Rassati) Finito di stampare nel mese di dicembre 2018 da Lithostampa ISSN: 0335-1576 ATTI DEL MUSEO CIVICO DI STORIA NATURALE DI TRIESTE VOL. 59 - 2018 TRIESTE 2018 Atti Mus. Civ. St. Nat. Trieste 59 2018 5/20 XII 2018 ISSN: 0335-1576 LA VISIONE DEI MINERALI DEL MUSEO CIVICO DI STORIA NATURALE DI TRIESTE ENRICO FRANGIPANI Via dei Fabbri, n. 1, 34124 Trieste – E-mail: [email protected] Abstract – The vision of the minerals of Trieste Natural History Museum. Among the many objectives of an exhi- bition, there is not only the valorization of the specimen but also the possibility of finding correlations among different disciplines and thus contribute to a dissemination of solid scientific knowledge.