Phylogeny and historical demography of endemic fishes in Lake Biwa: the ancient lake as a promoter of evolution and diversification of freshwater fishes in western Japan Ryoichi Tabata1, Ryo Kakioka1,2, Koji Tominaga1,3, Takefumi Komiya1 & Katsutoshi Watanabe1 1Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo, Kyoto 606-8502, Japan 2Research Institute for Humanity and Nature, 457-4 Kamigamo-Motoyama, Kita-ku, Kyoto 603-8047, Japan 3Kwansei Gakuin Senior High School, 1-155 Uegahara-ichibancho, Nishinomiya, Hyogo 662-8501, Japan Keywords Abstract Ancient lake, cytochrome b, divergence time, historical demography, Lake Biwa, mtDNA. To elucidate the origins of the endemic fish of Lake Biwa, an ancient lake in Japan, and the role of the lake in the diversification of freshwater fish in west- Correspondence ern Japan, we established a molecular phylogenetic framework with an absolute Ryoichi Tabata, Katsutoshi Watanabe; time scale and inferred the historical demography of a large set of fish species Graduate School of Science, Kyoto University, in and around the lake. We used mtDNA sequences obtained from a total of Kitashirakawa-Oiwakecho, Sakyo, Kyoto 190 specimens, including 11 endemic species of Lake Biwa and their related 606-8502, Japan. species, for phylogenetic analyses with divergence time estimations and from a Tel: +81 75 753 4079; Fax: +81 75 753 4079; total of 2319 specimens of 42 species (including 14 endemics) occurring in the E-mails:
[email protected]; lake for population genetic analyses. Phylogenetic analysis suggested that some
[email protected] of the endemic species diverged from their closest relatives earlier (1.3– 13.0 Ma) than the period in which the present environmental characteristics of Funding Information the lake started to develop (ca.