bioRxiv preprint doi: https://doi.org/10.1101/163063; this version posted July 13, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Page 1 of 36 Phylogenomics of the olive tree (Olea europaea) disentangles ancient allo- and autopolyploidizations in Lamiales. Irene Julca1,2,3,*, Marina Marcet-Houben1,2,*, Pablo Vargas4, and Toni Gabaldón1,2,5,# 1) Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain 2) Universitat Pompeu Fabra (UPF). 08003 Barcelona, Spain. 3) Universitat Autònoma de Barcelona (UAB). 08193 Barcelona, Spain. 10 4) Real Jardín Botánico de Madrid (CSIC-RJB). 28014 Madrid, Spain. 5) ICREA, Pg. Lluís Companys 23, 08010 Barcelona, Spain. *Both authors contributed equally # Author for correspondence:
[email protected] 15 Abstract Background Polyploidization is one of the major evolutionary processes that shape eukaryotic genomes, being particularly common in plants. Polyploids can arise through direct genome doubling within a species (autopolyploidization) or through the merging of genomes from distinct 20 species after hybridization (allopolyploidization). The relative contribution of either mechanism in plant evolution is debated. Here we used phylogenomics to dissect the tempo and mode of duplications in the genome of the olive tree (Olea europaea), one of the first domesticated Mediterranean fruit trees. Results bioRxiv preprint doi: https://doi.org/10.1101/163063; this version posted July 13, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity.