Evolutionary Reorganizations of Ontogenesis in Ascidians of the Genus Molgula A
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Sea Squirt Symbionts! Or What I Did on My Summer Vacation… Leah Blasiak 2011 Microbial Diversity Course
Sea Squirt Symbionts! Or what I did on my summer vacation… Leah Blasiak 2011 Microbial Diversity Course Abstract Microbial symbionts of tunicates (sea squirts) have been recognized for their capacity to produce novel bioactive compounds. However, little is known about most tunicate-associated microbial communities, even in the embryology model organism Ciona intestinalis. In this project I explored 3 local tunicate species (Ciona intestinalis, Molgula manhattensis, and Didemnum vexillum) to identify potential symbiotic bacteria. Tunicate-specific bacterial communities were observed for all three species and their tissue specific location was determined by CARD-FISH. Introduction Tunicates and other marine invertebrates are prolific sources of novel natural products for drug discovery (reviewed in Blunt, 2010). Many of these compounds are biosynthesized by a microbial symbiont of the animal, rather than produced by the animal itself (Schmidt, 2010). For example, the anti-cancer drug patellamide, originally isolated from the colonial ascidian Lissoclinum patella, is now known to be produced by an obligate cyanobacterial symbiont, Prochloron didemni (Schmidt, 2005). Research on such microbial symbionts has focused on their potential for overcoming the “supply problem.” Chemical synthesis of natural products is often challenging and expensive, and isolation of sufficient quantities of drug for clinical trials from wild sources may be impossible or environmentally costly. Culture of the microbial symbiont or heterologous expression of the biosynthetic genes offers a relatively economical solution. Although the microbial origin of many tunicate compounds is now well established, relatively little is known about the extent of such symbiotic associations in tunicates and their biological function. Tunicates (or sea squirts) present an interesting system in which to study bacterial/eukaryotic symbiosis as they are deep-branching members of the Phylum Chordata (Passamaneck, 2005 and Buchsbaum, 1948). -
Preliminary Mass-Balance Food Web Model of the Eastern Chukchi Sea
NOAA Technical Memorandum NMFS-AFSC-262 Preliminary Mass-balance Food Web Model of the Eastern Chukchi Sea by G. A. Whitehouse U.S. DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration National Marine Fisheries Service Alaska Fisheries Science Center December 2013 NOAA Technical Memorandum NMFS The National Marine Fisheries Service's Alaska Fisheries Science Center uses the NOAA Technical Memorandum series to issue informal scientific and technical publications when complete formal review and editorial processing are not appropriate or feasible. Documents within this series reflect sound professional work and may be referenced in the formal scientific and technical literature. The NMFS-AFSC Technical Memorandum series of the Alaska Fisheries Science Center continues the NMFS-F/NWC series established in 1970 by the Northwest Fisheries Center. The NMFS-NWFSC series is currently used by the Northwest Fisheries Science Center. This document should be cited as follows: Whitehouse, G. A. 2013. A preliminary mass-balance food web model of the eastern Chukchi Sea. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-AFSC-262, 162 p. Reference in this document to trade names does not imply endorsement by the National Marine Fisheries Service, NOAA. NOAA Technical Memorandum NMFS-AFSC-262 Preliminary Mass-balance Food Web Model of the Eastern Chukchi Sea by G. A. Whitehouse1,2 1Alaska Fisheries Science Center 7600 Sand Point Way N.E. Seattle WA 98115 2Joint Institute for the Study of the Atmosphere and Ocean University of Washington Box 354925 Seattle WA 98195 www.afsc.noaa.gov U.S. DEPARTMENT OF COMMERCE Penny. S. Pritzker, Secretary National Oceanic and Atmospheric Administration Kathryn D. -
Halocynthia Roretzi
Sekigami et al. Zoological Letters (2017) 3:17 DOI 10.1186/s40851-017-0078-3 RESEARCH ARTICLE Open Access Hox gene cluster of the ascidian, Halocynthia roretzi, reveals multiple ancient steps of cluster disintegration during ascidian evolution Yuka Sekigami1, Takuya Kobayashi1, Ai Omi1, Koki Nishitsuji2, Tetsuro Ikuta1, Asao Fujiyama3, Noriyuki Satoh2 and Hidetoshi Saiga1* Abstract Background: Hox gene clusters with at least 13 paralog group (PG) members are common in vertebrate genomes and in that of amphioxus. Ascidians, which belong to the subphylum Tunicata (Urochordata), are phylogenetically positioned between vertebrates and amphioxus, and traditionally divided into two groups: the Pleurogona and the Enterogona. An enterogonan ascidian, Ciona intestinalis (Ci), possesses nine Hox genes localized on two chromosomes; thus, the Hox gene cluster is disintegrated. We investigated the Hox gene cluster of a pleurogonan ascidian, Halocynthia roretzi (Hr) to investigate whether Hox gene cluster disintegration is common among ascidians, and if so, how such disintegration occurred during ascidian or tunicate evolution. Results: Our phylogenetic analysis reveals that the Hr Hox gene complement comprises nine members, including one with a relatively divergent Hox homeodomain sequence. Eight of nine Hr Hox genes were orthologous to Ci-Hox1, 2, 3, 4, 5, 10, 12 and 13. Following the phylogenetic classification into 13 PGs, we designated Hr Hox genes as Hox1, 2, 3, 4, 5, 10, 11/12/13.a, 11/12/13.b and HoxX. To address the chromosomal arrangement of the nine Hox genes, we performed two-color chromosomal fluorescent in situ hybridization, which revealed that the nine Hox genes are localized on a single chromosome in Hr, distinct from their arrangement in Ci. -
1471-2148-9-187.Pdf
BMC Evolutionary Biology BioMed Central Research article Open Access An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models Georgia Tsagkogeorga1,2, Xavier Turon3, Russell R Hopcroft4, Marie- Ka Tilak1,2, Tamar Feldstein5, Noa Shenkar5,6, Yossi Loya5, Dorothée Huchon5, Emmanuel JP Douzery1,2 and Frédéric Delsuc*1,2 Address: 1Université Montpellier 2, Institut des Sciences de l'Evolution (UMR 5554), CC064, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France, 2CNRS, Institut des Sciences de l'Evolution (UMR 5554), CC064, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France, 3Centre d'Estudis Avançats de Blanes (CEAB, CSIC), Accés Cala S. Francesc 14, 17300 Blanes (Girona), Spain, 4Institute of Marine Science, University of Alaska Fairbanks, Fairbanks, Alaska, USA, 5Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, 69978, Israel and 6Department of Biology, University of Washington, Seattle WA 98195, USA Email: Georgia Tsagkogeorga - [email protected]; Xavier Turon - [email protected]; Russell R Hopcroft - [email protected]; Marie-Ka Tilak - [email protected]; Tamar Feldstein - [email protected]; Noa Shenkar - [email protected]; Yossi Loya - [email protected]; Dorothée Huchon - [email protected]; Emmanuel JP Douzery - [email protected]; Frédéric Delsuc* - [email protected] * Corresponding author Published: 5 August 2009 Received: 16 October 2008 Accepted: 5 August 2009 BMC Evolutionary Biology 2009, 9:187 doi:10.1186/1471-2148-9-187 This article is available from: http://www.biomedcentral.com/1471-2148/9/187 © 2009 Tsagkogeorga et al; licensee BioMed Central Ltd. -
De Novo Draft Assembly of the Botrylloides Leachii Genome
bioRxiv preprint doi: https://doi.org/10.1101/152983; this version posted June 21, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 De novo draft assembly of the Botrylloides leachii genome 2 provides further insight into tunicate evolution. 3 4 Simon Blanchoud1#, Kim Rutherford2, Lisa Zondag1, Neil Gemmell2 and Megan J Wilson1* 5 6 1 Developmental Biology and Genomics Laboratory 7 2 8 Department of Anatomy, School of Biomedical Sciences, University of Otago, P.O. Box 56, 9 Dunedin 9054, New Zealand 10 # Current address: Department of Zoology, University of Fribourg, Switzerland 11 12 * Corresponding author: 13 Email: [email protected] 14 Ph. +64 3 4704695 15 Fax: +64 479 7254 16 17 Keywords: chordate, regeneration, Botrylloides leachii, ascidian, tunicate, genome, evolution 1 bioRxiv preprint doi: https://doi.org/10.1101/152983; this version posted June 21, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 18 Abstract (250 words) 19 Tunicates are marine invertebrates that compose the closest phylogenetic group to the 20 vertebrates. This chordate subphylum contains a particularly diverse range of reproductive 21 methods, regenerative abilities and life-history strategies. Consequently, tunicates provide an 22 extraordinary perspective into the emergence and diversity of chordate traits. Currently 23 published tunicate genomes include three Phlebobranchiae, one Thaliacean, one Larvacean 24 and one Stolidobranchian. To gain further insights into the evolution of the tunicate phylum, 25 we have sequenced the genome of the colonial Stolidobranchian Botrylloides leachii. -
Species Are Hypotheses: Avoid Connectivity Assessments Based on Pillars of Sand Eric Pante, Nicolas Puillandre, Amélia Viricel, Sophie Arnaud-Haond, D
Species are hypotheses: avoid connectivity assessments based on pillars of sand Eric Pante, Nicolas Puillandre, Amélia Viricel, Sophie Arnaud-Haond, D. Aurelle, Magalie Castelin, Anne Chenuil, Christophe Destombe, Didier Forcioli, Myriam Valero, et al. To cite this version: Eric Pante, Nicolas Puillandre, Amélia Viricel, Sophie Arnaud-Haond, D. Aurelle, et al.. Species are hypotheses: avoid connectivity assessments based on pillars of sand. Molecular Ecology, Wiley, 2015, 24 (3), pp.525-544. hal-02002440 HAL Id: hal-02002440 https://hal.archives-ouvertes.fr/hal-02002440 Submitted on 31 Jan 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Molecular Ecology Species are hypotheses : avoid basing connectivity assessments on pillars of sand. Journal:For Molecular Review Ecology Only Manuscript ID: Draft Manuscript Type: Invited Reviews and Syntheses Date Submitted by the Author: n/a Complete List of Authors: Pante, Eric; UMR 7266 CNRS - Université de La Rochelle, Puillandre, Nicolas; MNHN, Systematique & Evolution Viricel, Amélia; UMR 7266 CNRS - -
Bering Sea Marine Invasive Species Assessment Alaska Center for Conservation Science
Bering Sea Marine Invasive Species Assessment Alaska Center for Conservation Science Scientific Name: Molgula citrina Phylum Chordata Common Name sea grape Class Ascidiacea Order Stolidobranchia Family Molgulidae Z:\GAP\NPRB Marine Invasives\NPRB_DB\SppMaps\MOLCIT.png 78 Final Rank 53.15 Data Deficiency: 8.75 Category Scores and Data Deficiencies Total Data Deficient Category Score Possible Points Distribution and Habitat: 20.5 26 3.75 Anthropogenic Influence: 4.75 10 0 Biological Characteristics: 19.5 30 0 Impacts: 3.75 25 5.00 Figure 1. Occurrence records for non-native species, and their geographic proximity to the Bering Sea. Ecoregions are based on the classification system by Spalding et al. (2007). Totals: 48.50 91.25 8.75 Occurrence record data source(s): NEMESIS and NAS databases. General Biological Information Tolerances and Thresholds Minimum Temperature (°C) -1.4 Minimum Salinity (ppt) 17 Maximum Temperature (°C) 12.2 Maximum Salinity (ppt) 35 Minimum Reproductive Temperature (°C) NA Minimum Reproductive Salinity (ppt) 31* Maximum Reproductive Temperature (°C) NA Maximum Reproductive Salinity (ppt) 35* Additional Notes M. citrina is a prominent member of the fouling community. It is widely distributed in the North Atlantic, and has been reported as far north as 78°N (Lambert et al. 2010). In North America, it has been found from eastern Canada to Massachusetts. In 2008, it was found in Kachemak Bay in Alaska, the first time it had been detected in the Pacific Ocean (Lambert et al. 2010). While it is possible that these individuals are native to AK, preliminary DNA results suggest that they are genetically identical to specimens of the NE Atlantic. -
Redalyc.Keys for the Identification of Families and Genera of Atlantic
Biota Neotropica ISSN: 1676-0611 [email protected] Instituto Virtual da Biodiversidade Brasil Moreira da Rocha, Rosana; Bastos Zanata, Thais; Moreno, Tatiane Regina Keys for the identification of families and genera of Atlantic shallow water ascidians Biota Neotropica, vol. 12, núm. 1, enero-marzo, 2012, pp. 1-35 Instituto Virtual da Biodiversidade Campinas, Brasil Available in: http://www.redalyc.org/articulo.oa?id=199123750022 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Keys for the identification of families and genera of Atlantic shallow water ascidians Rocha, R.M. et al. Biota Neotrop. 2012, 12(1): 000-000. On line version of this paper is available from: http://www.biotaneotropica.org.br/v12n1/en/abstract?identification-key+bn01712012012 A versão on-line completa deste artigo está disponível em: http://www.biotaneotropica.org.br/v12n1/pt/abstract?identification-key+bn01712012012 Received/ Recebido em 16/07/2011 - Revised/ Versão reformulada recebida em 13/03/2012 - Accepted/ Publicado em 14/03/2012 ISSN 1676-0603 (on-line) Biota Neotropica is an electronic, peer-reviewed journal edited by the Program BIOTA/FAPESP: The Virtual Institute of Biodiversity. This journal’s aim is to disseminate the results of original research work, associated or not to the program, concerned with characterization, conservation and sustainable use of biodiversity within the Neotropical region. Biota Neotropica é uma revista do Programa BIOTA/FAPESP - O Instituto Virtual da Biodiversidade, que publica resultados de pesquisa original, vinculada ou não ao programa, que abordem a temática caracterização, conservação e uso sustentável da biodiversidade na região Neotropical. -
The Littoral Ascidians of the Spanish Mediterranean I
THE LITTORAL ASCIDIANS OF THE SPANISH MEDITERRANEAN I . From Port Bou to the Islas Medas F Lafargue, A Ramos, X Turon, B Banaigs, M Wahl To cite this version: F Lafargue, A Ramos, X Turon, B Banaigs, M Wahl. THE LITTORAL ASCIDIANS OF THE SPAN- ISH MEDITERRANEAN I . From Port Bou to the Islas Medas. Vie et Milieu / Life & Environment, Observatoire Océanologique - Laboratoire Arago, 1986, pp.133-139. hal-03023914 HAL Id: hal-03023914 https://hal.sorbonne-universite.fr/hal-03023914 Submitted on 25 Nov 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. VIE MILIEU, 1986, 36 (2) : 133-139 THE LITTORAL ASCIDIANS OF THE SPANISH MEDITERRANEAN I . From Port Bou to the Islas Medas F. LAFARGUE(1), A.A. RAMOS(2), X. TURON(3), B. BANAIGS (4) and M. WAHL (5) (1) Laboratoire Arago, F-66650 Banyuls/Mer, France (2) Instituto Maritimo-Pesquero del Mediterraneo, 03001 Alicante, Spain (3) Dept. Zoologia (Vertebrats), Fac. Biologia, Univ. de Barcelona, Avda Diagonal, 645, 08071 Barcelona, Spain (4) Laboratoire de Chimie des substances naturelles marines, Université de Perpignan, F-66000 Perpignan (5) Abt. Mar. Okol. Syst., Universitàt Kiel, D-23000 Kiel, FRG and Laboratoire Arago, F-66650 Banyuls/Mer, France ASCIDIES RÉSUMÉ. -
Conservation of Peripheral Nervous System Formation Mechanisms in Divergent Ascidian Embryos
RESEARCH ARTICLE Conservation of peripheral nervous system formation mechanisms in divergent ascidian embryos Joshua F Coulcher1†, Agne` s Roure1†, Rafath Chowdhury1, Me´ ryl Robert1, Laury Lescat1‡, Aure´ lie Bouin1§, Juliana Carvajal Cadavid1, Hiroki Nishida2, Se´ bastien Darras1* 1Sorbonne Universite´, CNRS, Biologie Inte´grative des Organismes Marins (BIOM), Banyuls-sur-Mer, France; 2Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Japan Abstract Ascidians with very similar embryos but highly divergent genomes are thought to have undergone extensive developmental system drift. We compared, in four species (Ciona and Phallusia for Phlebobranchia, Molgula and Halocynthia for Stolidobranchia), gene expression and gene regulation for a network of six transcription factors regulating peripheral nervous system *For correspondence: (PNS) formation in Ciona. All genes, but one in Molgula, were expressed in the PNS with some [email protected] differences correlating with phylogenetic distance. Cross-species transgenesis indicated strong † These authors contributed levels of conservation, except in Molgula, in gene regulation despite lack of sequence conservation equally to this work of the enhancers. Developmental system drift in ascidians is thus higher for gene regulation than Present address: ‡Department for gene expression and is impacted not only by phylogenetic distance, but also in a clade-specific of Developmental and Molecular manner and unevenly within a network. Finally, considering that Molgula is divergent in our Biology, Albert Einstein College analyses, this suggests deep conservation of developmental mechanisms in ascidians after 390 My of Medicine, New York, United of separate evolution. States; §Toulouse Biotechnology Institute, Universite´de Toulouse, CNRS, INRAE, INSA, Toulouse, France Competing interests: The Introduction authors declare that no The formation of an animal during embryonic development is controlled by the exquisitely precise competing interests exist. -
Bostricobranchus Digonas Abbott (Ascidiacea, Molgulidae) in Paranaguá Bay, Paraná, Brazil
Bostricobranchus digonas Abbott (Ascidiacea, Molgulidae) in paranaguá Bay, Paraná, Brazil. A case of recent invasion? 1 Rosana Moreira da Rocha 2 ABSTRACT. Bostricobranchus digonas Abbott, 1951 was discovered by dredging near Cotinga Island, Paranaguá Bay, Paraná (25°31'5 II "S, 48°28'714"W). Concen trated in a small area 1.5 m deep, lhe animais were collected by a Van Veen devi ce. All sizes from 3 mm up to 2 cm in body diameter were recovered. This is the ftrst report of a species of this genus in lhe South Atlantic and its occurrence is discussed. KEY WORDS . Ascidiacea, Molgulidae, Bostricobranchus, nonindigenous fauna Bostricobranchus digonas Abbott, 1951 is an estuarine species, to date, only described in Florida, USA. Here, the second occurrence of this species is reported in southeastern Brazil. Many individuais were collected in Paranaguá estuary, but surprisingly subsequent sampling failed to find more individuaIs. Marine species invasions have received much concern in recent years (CARLTON & GELLER 1993; LAMBERT 2001 for a review on ascidians) and one of the most difficult aspects in studying the consequences of these invasions is to determine when new species arrive in any region. This paper describes morpholo gical characters of a Bostricobranchus Traustedt, 1883 population showing that the individuais are very similar to the population of B. digonas from Florida, to which it is thought conspecific. AIso, the presence of an important harbor for petroleum tanking ships nearby suggests that this is a possible recent introduction. MATERIAL ANO METHOOS Specimens were collected in August 2000 by a Van Veen devi ce at Cotinga Island, Paranaguá Bay, Paraná (25°31 '511 "S, 48°28'714"W), an important estuary in southern Brazil. -
Development of a Marine Sensitivity Mapping Database and GIS Integration
The Marine Life Information Network® for Britain and Ireland (MarLIN) Development of a marine sensitivity mapping database and GIS integration. Stage 1. Review of current habitat and species information Contract no. FC 73-02-245 Report to Cyngor Cefn Gwlad Cymru / Countryside Council for Wales Harvey Tyler-Walters Olwen Ager Keith Hiscock December 2002 Reference: Tyler-Walters, H., Ager, O.E.D. & Hiscock, K., 2002. Development of a marine sensitivity mapping database and GIS integration. Stage 1. Review of current habitat and species information. Report to Cyngor Cefn Gwlad Cymru / Countryside Council for Wales from the Marine Life Information Network (MarLIN). Plymouth: Marine Biological Association of the UK. [Contract no. FC 73-02-245] Sensitivity mapping: review of current habitat and species information MarLIN 2 Sensitivity mapping: review of current habitat and species information MarLIN Development of a marine sensitivity mapping database and GIS integration. Stage 1. Review of current habitat and species information. Contents 1. AIMS AND BACKGROUND TO CONTRACT........................................................................................................9 2. TIMETABLE.....................................................................................................................................................9 3. METHODOLOGY..............................................................................................................................................9 4. RESULTS .......................................................................................................................................................10