PHYTOCHEMISTRY and PHARMACOGNOSY – Phytochemistry and Pharmacognosy – Massuo J
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Brief Guide to the Nomenclature of Organic Chemistry
1 Brief Guide to the Nomenclature of Table 1: Components of the substitutive name Organic Chemistry (4S,5E)-4,6-dichlorohept-5-en-2-one for K.-H. Hellwich (Germany), R. M. Hartshorn (New Zealand), CH3 Cl O A. Yerin (Russia), T. Damhus (Denmark), A. T. Hutton (South 4 2 Africa). E-mail: [email protected] Sponsoring body: Cl 6 CH 5 3 IUPAC Division of Chemical Nomenclature and Structure suffix for principal hept(a) parent (heptane) one Representation. characteristic group en(e) unsaturation ending chloro substituent prefix 1 INTRODUCTION di multiplicative prefix S E stereodescriptors CHEMISTRY The universal adoption of an agreed nomenclature is a key tool for 2 4 5 6 locants ( ) enclosing marks efficient communication in the chemical sciences, in industry and Multiplicative prefixes (Table 2) are used when more than one for regulations associated with import/export or health and safety. fragment of a particular kind is present in a structure. Which kind of REPRESENTATION The International Union of Pure and Applied Chemistry (IUPAC) multiplicative prefix is used depends on the complexity of the provides recommendations on many aspects of nomenclature.1 The APPLIED corresponding fragment – e.g. trichloro, but tris(chloromethyl). basics of organic nomenclature are summarized here, and there are companion documents on the nomenclature of inorganic2 and Table 2: Multiplicative prefixes for simple/complicated entities polymer3 chemistry, with hyperlinks to original documents. An No. Simple Complicated No. Simple Complicated AND overall -
Plant Systematics Economic Botany and Ethnobotany
CORE PAPER- VIII PLANT SYSTEMATICS ECONOMIC BOTANY AND ETHNOBOTANY UNIT - III Rubiaceae Systematic position Class-Dicotyledons Sub class -Gamopetalae Series –Inferae Order - Rubiales Family-Rubiaceae Distribution of Rubiaceae: It is commonly known as Madder or Coffee family. It includes 6000 species and 500 genera. In India it is represented by 551 species. The members of this family are distributed in tropics, sub-tropics and temperate regions. Vegetative characters Habit and Habitatat. Trees -Adina cordifolia Shrubs- Gardenia (mostly), some are twinners- Paederia Climbers -Uncaria Herbs -Gallium Epiphytic eg Hymenopogon parasiticus Helophytic, or mesophytic, or xerophytic, or hydrophytic (Limnosipanea). Majority are perennials a few annuals, cultrivated as well as wild Root –branched tap root Stem- aerial,erect or weak, cylindrical or angular herbaceous Gallium or woody ,armed with spines Randia dementorum ,glabrous,pubescent hairy or smooth Stephegyne, branched, dichasial cymein Gallium. Leaf - Cauline and ramal Leaves stipulate. Stipules interpetiolar (between the petioles , or intrapetiolar; between the petiole and axis .leafy Gallium divided Borreria hair like Pentas sometimes fused to form a sheath GardeniaPetiolate, subsessile or sessile Gallium Leaves opposite Cinchona or whorled Gallium simple; Lamina entire; Cinchona opposite decussate Ixora ), reticulate Floral characters: Inflorescence- Flowers aggregated in ‘inflorescences’, or solitary (less often); in cymes, or in panicles, Cinchona or in heads (rarely, e.g. Morindeae, Gardenia). The ultimate inflorescence units compound cyme MussaendaInflorescences with involucral bracts (when capitate), or without involucral bracts; Flowers -Bracteate Gardenia ebracteate Cinchona Bracts persistant –Hymenopogan Pedicellate,subsessile Gardenia sessile RandinBracteolate or ebracteolate, complete or incomplete actinomorphic,, Rarely Zygomorphic Randeletin bisexual unisexual Coprosma , epigynous regular; mostly 4 merous, or 5 merous; cyclic; tetracyclic. -
Phytochemistry and Pharmacogenomics of Natural Products Derived from Traditional Chinese Medicine and Chinese Materia Medica with Activity Against Tumor Cells
152 Phytochemistry and pharmacogenomics of natural products derived from traditional chinese medicine and chinese materia medica with activity against tumor cells Thomas Efferth,1 Stefan Kahl,2,3,6 Kerstin Paulus,4 Introduction 2 5 3 Michael Adams, Rolf Rauh, Herbert Boechzelt, Cancer is responsible for 12% of the world’s mortality and Xiaojiang Hao,6 Bernd Kaina,5 and Rudolf Bauer2 the second-leading cause of death in the Western world. 1 Limited chances for cure by chemotherapy are a major German Cancer Research Centre, Pharmaceutical Biology, contributing factor to this situation. Despite much progress Heidelberg, Germany; 2Institute of Pharmaceutical Sciences, University of Graz; 3Joanneum Research, Graz, Austria; 4Institute in recent years,a key problem in tumor therapy with of Pharmaceutical Biology, University of Du¨sseldorf, Du¨sseldorf, established cytostatic compounds is the development of Germany; 5Institute of Toxicology, University of Mainz, Mainz, 6 drug resistance and threatening side effects. Most estab- Germany; and State Key Laboratory of Phytochemistry and Plant lished drugs suffer from insufficient specificity toward Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China tumor cells. Hence,the identification of improved anti- tumor drugs is urgently needed. Several approaches have been delineated to search for Abstract novel antitumor compounds. Combinatorial chemistry,a The cure from cancer is still not a reality for all patients, technology conceived about 20 years ago,was envisaged as which is mainly due to the limitations of chemotherapy a promising strategy to this demand. The expected surge in (e.g., drug resistance and toxicity). Apart from the high- productivity,however,has hardly materialized (1). -
Virtual Screening for the Discovery of Bioactive Natural Products by Judith M
Progress in Drug Research, Vol. 65 (Frank Petersen and René Amstutz, Eds.) © 2008 Birkhäuser Ver lag, Basel (Swit zer land) Virtual screening for the discovery of bioactive natural products By Judith M. Rollinger1, Hermann Stuppner1,2 and Thierry Langer2,3 1Institute of Pharmacy/Pharmacog- nosy, Leopold-Franzens University of Innsbruck, Innrain 52c, 6020 Innsbruck, Austria 2Inte:Ligand GmbH, Software Engineering and Consulting, Clemens Maria Hofbauergasse 6, 2344 Maria Enzersdorf, Austria 3Institute of Pharmacy/Pharmaceu- tical Chemistry/Computer Aided Molecular Design Group, Leopold- Franzens University of Innsbruck, Innrain 52c, 6020 Innsbruck, Austria <[email protected]> Virtual screening for the discovery of bioactive natural products Abstract In this survey the impact of the virtual screening concept is discussed in the field of drug discovery from nature. Confronted by a steadily increasing number of secondary metabolites and a growing number of molecular targets relevant in the therapy of human disorders, the huge amount of information needs to be handled. Virtual screening filtering experiments already showed great promise for dealing with large libraries of potential bioactive molecules. It can be utilized for browsing databases for molecules fitting either an established pharma- cophore model or a three dimensional (3D) structure of a macromolecular target. However, for the discovery of natural lead candidates the application of this in silico tool has so far almost been neglected. There are several reasons for that. One concerns the scarce availability of natural product (NP) 3D databases in contrast to synthetic libraries; another reason is the problematic compatibility of NPs with modern robotized high throughput screening (HTS) technologies. -
Phytochemistry, Pharmacology and Agronomy of Medicinal Plants: Amburana Cearensis, an Interdisciplinary Study
17 Phytochemistry, Pharmacology and Agronomy of Medicinal Plants: Amburana cearensis, an Interdisciplinary Study Kirley M. Canuto, Edilberto R. Silveira, Antonio Marcos E. Bezerra, Luzia Kalyne A. M. Leal and Glauce Socorro B. Viana Empresa Brasileira de Pesquisa Agropecuária, Universidade Federal do Ceará, Brazil 1. Introduction Plants are an important source of biologically active substances, therefore they have been used for medicinal purposes, since ancient times. Plant materials are used as home remedies, in over-the-counter drug products, dietary supplements and as raw material for obtention of phytochemicals. The use of medicinal plants is usually based on traditional knowledge, from which their therapeutic properties are oftenly ratified in pharmacological studies. Nowadays, a considerable amount of prescribed drug is still originated from botanical sources and they are associated with several pharmacological activities, such as morphine (I) (analgesic), scopolamine (II) atropine (III) (anticholinergics), galantamine (IV) (Alzheimer's disease), quinine (V) (antimalarial), paclitaxel (VI), vincristine (VII) and vinblastine (VIII) (anticancer drugs), as well as with digitalis glycosides (IX) (heart failure) (Fig. 1). The versatility of biological actions can be attributed to the huge amount and wide variety of secondary metabolites in plant organisms, belonging to several chemical classes as alkaloids, coumarins, flavonoids, tannins, terpenoids, xanthones, etc. The large consumption of herbal drugs, in spite of the efficiency of -
Introduction to NMR Spectroscopy of Proteins
A brief introduction to NMR spectroscopy of proteins By Flemming M. Poulsen 2002 1 Introduction Nuclear magnetic resonance, NMR, and X-ray crystallography are the only two methods that can be applied to the study of three-dimensional molecular structures of proteins at atomic resolution. NMR spectroscopy is the only method that allows the determination of three-dimensional structures of proteins molecules in the solution phase. In addition NMR spectroscopy is a very useful method for the study of kinetic reactions and properties of proteins at the atomic level. In contrast to most other methods NMR spectroscopy studies chemical properties by studying individual nuclei. This is the power of the methods but sometimes also the weakness. NMR spectroscopy can be applied to structure determination by routine NMR techniques for proteins in the size range between 5 and 25 kDa. For many proteins in this size range structure determination is relatively easy, however there are many examples of structure determinations of proteins, which have failed due to problems of aggregation and dynamics and reduced solubility. It is the purpose of these notes to introduce the reader to descriptions and applications of the methods of NMR spectroscopy most commonly applied in scientific studies of biological macromolecules, in particular proteins. The figures 1,2 and 11 are copied from “Multidímensional NMR in Liquids” by F.J.M de Ven (1995)Wiley-VCH The Figure13 and Table 1 have been copied from “NMR of Proteins and Nucleic acis” K. Wüthrich (1986) Wiley Interscience The Figures 20, 21 and 22 have been copied from J. -
Chapter 1: Atoms, Molecules and Ions
Previous Chapter Table of Contents Next Chapter Chapter 1: Atoms, Molecules and Ions Section 1.1: Introduction In this course, we will be studying matter, “the stuff things are made of”. There are many ways to classify matter. For instance, matter can be classified according to the phase, that is, the physical state a material is in. Depending on the pressure and the temperature, matter can exist in one of three phases (solid, liquid, or gas). The chemical structure of a material determines the range of temperatures and pressures under which this material is a solid, a liquid or a gas. Consider water for example. The principal differences between water in the solid, liquid and gas states are simply: 1) the average distance between the water molecules; small in the solid and the liquid and large in the gas and 2) whether the molecules are organized in an orderly three-dimensional array (solid) or not (liquid and gas). Another way to classify matter is to consider whether a substance is pure or not. So, matter can be classified as being either a pure substance or a mixture. A pure substance has unique composition and properties. For example, water is a pure substance (whether from Texas or Idaho, each water molecule always contains 2 atoms of hydrogen for 1 atom of oxygen). Under the same atmospheric pressure and at the same ambient temperature, water always has the same density. We can go a little further and classify mixtures are either homogeneous or heterogeneous. In a homogeneous mixture, for example, as a result of mixing a teaspoon of salt in a glass of water, the composition of the various components and their properties are the same throughout. -
Combinatorial and High-Throughput Screening of Materials Libraries: Review of State of the Art Radislav Potyrailo*
REVIEW pubs.acs.org/acscombsci Combinatorial and High-Throughput Screening of Materials Libraries: Review of State of the Art Radislav Potyrailo* Chemistry and Chemical Engineering, GE Global Research Center, Niskayuna, New York 12309, United States Krishna Rajan Department of Materials Science and Engineering and Institute for Combinatorial Discovery, Iowa State University, Ames, Iowa 50011, United States Klaus Stoewe Universit€at des Saarlandes, Technische Chemie, Campus C4.2, 66123, Saarbruecken, Germany Ichiro Takeuchi Department of Materials Science and Engineering, University of Maryland, College Park, Maryland 20742, United States Bret Chisholm Center for Nanoscale Science and Engineering and Department of Coatings and Polymeric Materials, North Dakota State University, Fargo, North Dakota 58102, United States Hubert Lam Chemistry and Chemical Engineering, GE Global Research Center, Niskayuna, New York 12309, United States ABSTRACT: Rational materials design based on prior knowledge is attractive because it promises to avoid time-consuming synthesis and testing of numerous materials candidates. However with the increase of complexity of materials, the scientific ability for the rational materials design becomes progressively limited. As a result of this complexity, combinatorial and high-throughput (CHT) experimentation in materials science has been recognized as a new scientific approach to generate new knowledge. This review demonstrates the broad applicability of CHT experimentation technologies in discovery and optimiza- tion of new materials. We discuss general principles of CHT materials screening, followed by the detailed discussion of high-throughput materials characteriza- tion approaches, advances in data analysis/mining, and new materials develop- ments facilitated by CHT experimentation. We critically analyze results of materials development in the areas most impacted by the CHT approaches, such as catalysis, electronic and functional materials, polymer-based industrial coatings, sensing materials, and biomaterials. -
Electron Paramagnetic Resonance of Radicals and Metal Complexes. 2. International Conference of the Polish EPR Association. Wars
! U t S - PL — voZ, PL9700944 Warsaw, 9-13 September 1996 ELECTRON PARAMAGNETIC RESONANCE OF RADICALS AND METAL COMPLEXES 2nd International Conference of the Polish EPR Association INSTITUTE OF NUCLEAR CHEMISTRY AND TECHNOLOGY UNIVERSITY OF WARSAW VGL 2 8 Hi 1 2 ORGANIZING COMMITTEE Institute of Nuclear Chemistry and Technology Prof. Andrzej G. Chmielewski, Ph.D., D.Sc. Assoc. Prof. Hanna B. Ambroz, Ph.D., D.Sc. Assoc. Prof. Jacek Michalik, Ph.D., D.Sc. Dr Zbigniew Zimek University of Warsaw Prof. Zbigniew Kqcki, Ph.D., D.Sc. ADDRESS OF ORGANIZING COMMITTEE Institute of Nuclear Chemistry and Technology, Dorodna 16,03-195 Warsaw, Poland phone: (0-4822) 11 23 47; telex: 813027 ichtj pi; fax: (0-4822) 11 15 32; e-mail: [email protected] .waw.pl Abstracts are published in the form as received from the Authors SPONSORS The organizers would like to thank the following sponsors for their financial support: » State Committee of Scientific Research » Stiftung fur Deutsch-Polnische Zusammenarbeit » National Atomic Energy Agency, Warsaw, Poland » Committee of Chemistry, Polish Academy of Sciences, Warsaw, Poland » Committee of Physics, Polish Academy of Sciences, Poznan, Poland » The British Council, Warsaw, Poland » CIECH S.A. » ELEKTRIM S.A. » Broker Analytische Messtechnik, Div. ESR/MINISPEC, Germany 3 CONTENTS CONFERENCE PROGRAM 9 LECTURES 15 RADICALS IN DNA AS SEEN BY ESR SPECTROSCOPY M.C.R. Symons 17 ELECTRON AND HOLE TRANSFER WITHIN DNA AND ITS HYDRATION LAYER M.D. Sevilla, D. Becker, Y. Razskazovskii 18 MODELS FOR PHOTOSYNTHETIC REACTION CENTER: STEADY STATE AND TIME RESOLVED EPR SPECTROSCOPY H. Kurreck, G. Eiger, M. Fuhs, A Wiehe, J. -
Pharmacognosy, Phytochemical Study and Antioxidant Activity of Sterculia Rubiginosa Zoll
Pharmacogn J. 2018; 10(3):571-575. A Multifaceted Journal in the field of Natural Products and Pharmacognosy Original Article www.phcogj.com | www.journalonweb.com/pj | www.phcog.net Pharmacognosy, Phytochemical Study and Antioxidant Activity of Sterculia rubiginosa Zoll. Ex Miq. Leaves Rini Prastiwi1,2*, Berna Elya2, Rani Sauriasari3, Muhammad Hanafi4, Ema Dewanti1 ABSTRACT Introduction: Sterculia rubiginosa Zoll ex.Miq leaves have been used as traditional medicine in Indonesia. There is no report about pharmacognosy and phytochemical study with this plant.Objective: The main aim of this research is to establish pharmacognosy, phytochemical study and antioxidant activity of Sterculia rubiginosa Zoll.ex. Miq. Leaves. The plant used to cure many diseases of Indonesia. Methods: In the present study, pharmacognosy and phyto- 1,2* chemical study of plant material were performed as per the Indonesian Herb Pharmacopoeia. Rini Prastiwi , Berna Results: Microscopy powder of Sterculia rubiginosa Zoll.ex. Miq. Leaves shows star shape Elya2, Rani Sauriasari3, trichoma as a specific fragment. Physicochemical parameters including total ash (17.152 %), Muhammad Hanafi4, acid-insoluble ash (0.922 %), water-soluble extractive (1.610 % w/w), alcohol-soluble extractive Ema Dewanti1 (4.524 % w/w), hexane-soluble extractive (4.005 % w/w), and ethyl acetate-soluble extractive (3.160 % w/w) were evaluated. Phytochemical screening of ethanol extracts showed the 1Department of Pharmacognosy- presence of tannins, flavonoids, alkaloids, steroids-terpenoids, glycosides, and phenols. And Phytochemistry, Faculty of Pharmacy absent of saponins and Anthraquinones. Antioxidant activity with IC50 157, 4665 ppm and and Science Muhammadiyah Prof.Dr. flavonoid total was 59.436 mg/g quercetin equivalent. -
Combinatorial Chemistry: a Guide for Librarians
City University of New York (CUNY) CUNY Academic Works Publications and Research City College of New York 2002 Combinatorial Chemistry: A Guide for Librarians Philip Barnett CUNY City College How does access to this work benefit ou?y Let us know! More information about this work at: https://academicworks.cuny.edu/cc_pubs/266 Discover additional works at: https://academicworks.cuny.edu This work is made publicly available by the City University of New York (CUNY). Contact: [email protected] Issues in Science and Technology Librarianship Winter 2002 DOI:10.5062/F4DZ0690 URLs in this document have been updated. Links enclosed in{curly brackets} have been changed. If a replacement link was located, the new URL was added and the link is active; if a new site could not be identified, the broken link was removed. Combinatorial Chemistry: A Guide for Librarians Philip Barnett Associate Professor and Science Reference Librarian Science/Engineering Library City College of New York (CUNY) [email protected] Abstract In the 1980s a need to synthesize many chemical compounds rapidly and inexpensively spawned a new branch of chemistry known as combinatorial chemistry. While the techniques of this rapidly growing field are used primarily to find new candidate drugs, combinatorial chemistry is also finding other applications in various fields such as semiconductors, catalysts, and polymers. This guide for librarians explains the basics of combinatorial chemistry and elucidates the key information sources needed by combinatorial chemists. Introduction Most librarians who serve chemists or chemistry students are familiar with the six main disciplines of chemistry. These are: Physical chemistry applies the fundamental laws of physics, such as thermodynamics, electricity, and quantum mechanics, to explain chemical behavior. -
Sources of Crude Drug, Plant Families, Biogenesis of Phytochemicals
1 Sources of Crude Drug, Plant Families, Biogenesis of Phytochemicals SOURCES OF CRUDE DRUG Plant Oldest source of drugs. 25% of the drugs prescribed worldwide come from plants More than 200 drugs considered as basic and essential by the World Health Organisation (WHO) Significant number of synthetic drugs obtained from natural precursors. Example: Digoxin from Digitalis species, quinine and quinidine from Cinchona species, vincristrine and vinblastine from Catharanthus roseus, atropine from Atropa belladonna and morphine and codeine from Papaver somniferum. Animal Second largest source of crude drugs. Example: Honey from honeybee, beeswax from bees, cod liver oil from shark, bufalin from toad, animal pancreas is a source of Insulin, musk oil from musk, spermaceti wax from sperm whale, woolfat from sheep, carminic acid from colchineal, venoms from snake Mineral Highly purified form of naturally occurring mineral substances is used in medicine Example: Sulphur is a key ingredient in certain bacteriostatic drugs, shilajit is used as tonic, calamine is used as anti-itching agent Marine Major part of earth is covered with water bodies and hence bioactive compounds from marine flora and fauna (microorganisms, algae, fungi, invertebrates, and 1 Contd… 2 Pharmacognosy and Phytochemistry: A Companion Handbook vertebrates) have extensive past and present use in the treatment of many diseases Marine Serve as compounds of interest both in their natural form and as templates for synthetic modification. Several molecules isolated from various