Vessels in Zingiberaceae
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Inferring the Phylogeny and Divergence of Chinese Curcuma (Zingiberaceae) in the Hengduan Mountains of the Qinghai–Tibet Plateau by Reduced Representation Sequencing
Article Inferring the Phylogeny and Divergence of Chinese Curcuma (Zingiberaceae) in the Hengduan Mountains of the Qinghai–Tibet Plateau by Reduced Representation Sequencing Heng Liang 1,†, Jiabin Deng 2,†, Gang Gao 3, Chunbang Ding 1, Li Zhang 4, Ke Xu 5, Hong Wang 6 and Ruiwu Yang 1,* 1 College of Life Science, Sichuan Agricultural University, Yaan 625014, China; [email protected] (H.L.); [email protected] (C.D.) 2 School of Geography and Resources, Guizhou Education University, Guiyang 550018, China; [email protected] 3 College of Life Sciences and Food Engineering, Yibin University, Yibin 644000, China; [email protected] 4 College of Science, Sichuan Agricultural University, Yaan 625014, China; [email protected] 5 Sichuan Horticultural Crop Technical Extension Station, Chengdu 610041, China; [email protected] 6 Jiangsu Key Laboratory for Horticultural Crop Genetic Improvement, Institute of Pomology, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China; [email protected] * Correspondence: [email protected] † These authors have contributed equally to this work. Abstract: Clarifying the genetic relationship and divergence among Curcuma L. (Zingiberaceae) species around the world is intractable, especially among the species located in China. In this study, Citation: Liang, H.; Deng, J.; Gao, G.; Reduced Representation Sequencing (RRS), as one of the next generation sequences, has been applied Ding, C.; Zhang, L.; Xu, K.; Wang, H.; to infer large scale genotyping of major Chinese Curcuma species which present little differentiation Yang, R. Inferring the Phylogeny and of morphological characteristics and genetic traits. The 1295 high-quality SNPs (reduced-filtered Divergence of Chinese Curcuma SNPs) were chosen from 997,988 SNPs of which were detected from the cleaned 437,061 loci by (Zingiberaceae) in the Hengduan RRS to investigate the phylogeny and divergence among eight major Curcuma species locate in the Mountains of the Qinghai–Tibet Hengduan Mountains of the Qinghai–Tibet Plateau (QTP) in China. -
20 Traditional Knowledge of Medicines Belonging to Family Zingiberaceae from South Western Maharashtra, India
International Journal of Botany Studies International Journal of Botany Studies ISSN: 2455-541X, Impact Factor: RJIF 5.12 www.botanyjournals.com Volume 1; Issue 4; May 2016; Page No. 20-23 Traditional knowledge of medicines belonging to Family Zingiberaceae from South Western Maharashtra, India. 1 Abhijeet R. Kasarkar, 2 Dilipkumar K. Kulkarni 1 Department of Botany, Vivekanand College, Kolhapur, India. 2 BAIF Development Research Foundation, Warje-Malwadi, Pune, India. Abstract Traditional knowledge of medicines on family Zingiberaceae were collected from South Western Maharashtra regions like Kolhapur, Satara, Ratnagiri, Sindhudurg Districts, during the year 2008 to 2010. The information related to plant species which are used to cure common ailments and disease by personal interviews with local people and herbalists. The 14 species of family Zingiberaceae are used for medicinal purpose. The Details of these species are described with their botanical name, family, local name, part used and ethno-medicinal uses. Keywords: Family, Zingiberaceae, common ailments, South Western Maharashtra. 1. Introduction Ancient Indian books on medicines namely 'Caraka Samhita' The term ethno-botany was coined first by John W. and 'Susmta Samhita' describe the wonderful curative Harshberger [6]. Ethno-botany is a dynamic contemporary properties of Zingiberaceae especially Zingiber Boehm. And science with tremendous importance for the future due to Curcuma L. due to their chemical principles. The medicinal conservation in the hilly parts by oral tradition. It is a and aromatic properties of Indian Zingiberaceae members are traditional knowledge passed from one generation to second described in Materia Indica [1]. Ethnobotanical study of the generation by way of oral tradition and not documented till wild species of Zingiberaceae carried out by Manandhar [16]. -
The Molecular Phylogeny of Alpinia (Zingiberaceae): a Complex and Polyphyletic Genus of Gingers1
American Journal of Botany 92(1): 167±178. 2005. THE MOLECULAR PHYLOGENY OF ALPINIA (ZINGIBERACEAE): A COMPLEX AND POLYPHYLETIC GENUS OF GINGERS1 W. J OHN KRESS,2,3,5 AI-ZHONG LIU,2 MARK NEWMAN,4 AND QING-JUN LI3 2Department of Botany, MRC-166, United States National Herbarium, National Museum of Natural History, Smithsonian Institution, PO Box 37012, Washington, D.C. 20013-7012 USA; 3Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, Yunnan 666303 China; and 4Royal Botanic Garden, 20A Inverleith Row, Edinburgh EH3 5LR, Scotland, UK Alpinia is the largest, most widespread, and most taxonomically complex genus in the Zingiberaceae with 230 species occurring throughout tropical and subtropical Asia. Species of Alpinia often predominate in the understory of forests, while others are important ornamentals and medicinals. Investigations of the evolutionary relationships of a subset of species of Alpinia using DNA sequence- based methods speci®cally test the monophyly of the genus and the validity of the previous classi®cations. Seventy-two species of Alpinia, 27 non-Alpinia species in the subfamily Alpinioideae, eight species in the subfamily Zingiberoideae, one species in the subfamily Tamijioideae, and three species in the outgroup genus Siphonochilus (Siphonochiloideae) were sequenced for the plastid matK region and the nuclear internal transcribed spacer (ITS) loci. Parsimony analyses of both individual and combined data sets identi®ed six polyphyletic clades containing species of Alpinia distributed across the tribe Alpinieae. These results were supported by a Bayesian analysis of the combined data set. Except in a few speci®c cases, these monophyletic groupings of species do not correspond with either Schumann's (1904) or Smith's (1990) classi®cation of the genus. -
GORILLA Report on the Conservation Status of Gorillas
Version CMS Technical Series Publication N°17 GORILLA Report on the conservation status of Gorillas. Concerted Action and CMS Gorilla Agreement in collaboration with the Great Apes Survival Project-GRASP Royal Belgian Institute of Natural Sciences 2008 Copyright : Adrian Warren – Last Refuge.UK 1 2 Published by UNEP/CMS Secretariat, Bonn, Germany. Recommended citation: Entire document: Gorilla. Report on the conservation status of Gorillas. R.C. Beudels -Jamar, R-M. Lafontaine, P. Devillers, I. Redmond, C. Devos et M-O. Beudels. CMS Gorilla Concerted Action. CMS Technical Series Publication N°17, 2008. UNEP/CMS Secretariat, Bonn, Germany. © UNEP/CMS, 2008 (copyright of individual contributions remains with the authors). Reproduction of this publication for educational and other non-commercial purposes is authorized without permission from the copyright holder, provided the source is cited and the copyright holder receives a copy of the reproduced material. Reproduction of the text for resale or other commercial purposes, or of the cover photograph, is prohibited without prior permission of the copyright holder. The views expressed in this publication are those of the authors and do not necessarily reflect the views or policies of UNEP/CMS, nor are they an official record. The designation of geographical entities in this publication, and the presentation of the material, do not imply the expression of any opinion whatsoever on the part of UNEP/CMS concerning the legal status of any country, territory or area, or of its authorities, nor concerning the delimitation of its frontiers and boundaries. Copies of this publication are available from the UNEP/CMS Secretariat, United Nations Premises. -
Thai Zingiberaceae : Species Diversity and Their Uses
URL: http://www.iupac.org/symposia/proceedings/phuket97/sirirugsa.html © 1999 IUPAC Thai Zingiberaceae : Species Diversity And Their Uses Puangpen Sirirugsa Department of Biology, Faculty of Science, Prince of Songkla University, Hat Yai, Thailand Abstract: Zingiberaceae is one of the largest families of the plant kingdom. It is important natural resources that provide many useful products for food, spices, medicines, dyes, perfume and aesthetics to man. Zingiber officinale, for example, has been used for many years as spices and in traditional forms of medicine to treat a variety of diseases. Recently, scientific study has sought to reveal the bioactive compounds of the rhizome. It has been found to be effective in the treatment of thrombosis, sea sickness, migraine and rheumatism. GENERAL CHARACTERISTICS OF THE FAMILY ZINGIBERACEAE Perennial rhizomatous herbs. Leaves simple, distichous. Inflorescence terminal on the leafy shoot or on the lateral shoot. Flower delicate, ephemeral and highly modified. All parts of the plant aromatic. Fruit a capsule. HABITATS Species of the Zingiberaceae are the ground plants of the tropical forests. They mostly grow in damp and humid shady places. They are also found infrequently in secondary forest. Some species can fully expose to the sun, and grow on high elevation. DISTRIBUTION Zingiberaceae are distributed mostly in tropical and subtropical areas. The center of distribution is in SE Asia. The greatest concentration of genera and species is in the Malesian region (Indonesia, Malaysia, Singapore, Brunei, the Philippines and Papua New Guinea) *Invited lecture presented at the International Conference on Biodiversity and Bioresources: Conservation and Utilization, 23–27 November 1997, Phuket, Thailand. -
Leptosolena(Zingiberaceae)
The JapaneseSocietyJapanese Society for Plant Systematics ISSN 1346-7565 Acta Phytetax. Geobet. S6 (]): 41-53 (200S) Return from the Lost: Rediscovery of the Presumed Extinct Leptosolena (Zingiberaceae) in the Philippines and its Phylogenetic Placement in Gingers HIDENOBU FUNAKOSHI]*, W. JOHN KRESS2, JANA gKORNIeKOVA3, AIZHONG LIU2 and KEN INOUE`' iDepartment qf'Environmental System Science, Graduate School ofScience and TlechnologM Shinshu U}iiversiijl 3- 2Dapartment 1-l Asahi, Matsumoto 390-862J Japan; ofBotany MRC-166, Uhited States Ndtional Herbarium, Museum Historpl IVational ofNZitural Smithsonian lnstitution, R O. Box 37012, Ukeshington, D,C 20013-7012 3Department 4Biolegicat USA; ofBotan>L Charles University, Bendtskd 2, J28 Ol, Prague, Czech Rqp"hlic; Institute and Herbarium, fuculty ofScience, Shinsht{ Universic)l 3-1-1 Asahi, Matsumoto 390-8621 Jopan The genus Leptosolena currently accepted as monotypic and endemic to the Philippines, has been con- sidered as an imperfectly known genus due to the description based on insucacient herbarium materi- als fOr describing fioral characters and no recent collection. Our rediscovery of L, haenkei has made it possible not only to describe the species in more depth from fresh materials and to compare with the uncertain second species, L. insignis, more precisely, but to clarify the phylogenetic position ameng Zingiberaceae with molecular data. Our results support the former treatment that L haenkei and L insig- nis are conspecific, resulting in L. insignis as a later synonym. The ]ectotype of L. haenkei is chosen among Haenke's historical colLections deposited at PR and PRC. Results from DNA sequence data of the ITS and tnatK loci demonstrate that Lqptosolena forms a clade with LEiizoverberghia and Aipinia species from the Philippines and Oceania. -
Journal Vol. 30 Final 2076.7.1.Indd
102-120 J. Nat. Hist. Mus. Vol. 30, 2016-18 Flora of community managed forests of Palpa district, western Nepal Pratiksha Shrestha1, Ram Prasad Chaudhary2, Krishna Kumar Shrestha1, Dharma Raj Dangol3 1Central Department of Botany,Tribhuvan University, Kathmandu, Nepal 2Research Center for Applied Science and Technology (RECAST), Kathmandu, Nepal 3Natural History Museum, Tribhuvan University, Swayambhu, Kathmandu, Nepal ABSTRACT Floristic diversity is studied based on gender in two different management committee community forests (Barangdi-Kohal jointly managed community forest and Bansa-Gopal women managed community forest) of Palpa district, west Nepal. Square plot of 10m×10m size quadrat were laid for covering all forest areas and maintained minimum 40m distance between two quadrats. Altogether 68 plots (34 in each forest) were sampled. Both community forests had nearly same altitudinal range, aspect and slope but differed in different environmental variables and members of management committees. All the species present in quadrate and as well as outside the quadrate were recorded for analysis. There were 213 species of flowering plant belonging to 67 families and 182 genera. Barangdi-Kohal JM community forest had high species richness i.e. 176 species belonging to 64 families and 150 genera as compared to Bansa-Gopal WM community forest with 143 species belonging to 56 families and 129 genera. According to different life forms and family and genus wise jointly managed forest have high species richness than in women managed forest. Both community forests are banned for fodder, fuel wood and timber collection without permission of management comities. There is restriction of grazing in JM forest, whereas no restriction of grazing in WM forest. -
Rich Zingiberales
RESEARCH ARTICLE INVITED SPECIAL ARTICLE For the Special Issue: The Tree of Death: The Role of Fossils in Resolving the Overall Pattern of Plant Phylogeny Building the monocot tree of death: Progress and challenges emerging from the macrofossil- rich Zingiberales Selena Y. Smith1,2,4,6 , William J. D. Iles1,3 , John C. Benedict1,4, and Chelsea D. Specht5 Manuscript received 1 November 2017; revision accepted 2 May PREMISE OF THE STUDY: Inclusion of fossils in phylogenetic analyses is necessary in order 2018. to construct a comprehensive “tree of death” and elucidate evolutionary history of taxa; 1 Department of Earth & Environmental Sciences, University of however, such incorporation of fossils in phylogenetic reconstruction is dependent on the Michigan, Ann Arbor, MI 48109, USA availability and interpretation of extensive morphological data. Here, the Zingiberales, whose 2 Museum of Paleontology, University of Michigan, Ann Arbor, familial relationships have been difficult to resolve with high support, are used as a case study MI 48109, USA to illustrate the importance of including fossil taxa in systematic studies. 3 Department of Integrative Biology and the University and Jepson Herbaria, University of California, Berkeley, CA 94720, USA METHODS: Eight fossil taxa and 43 extant Zingiberales were coded for 39 morphological seed 4 Program in the Environment, University of Michigan, Ann characters, and these data were concatenated with previously published molecular sequence Arbor, MI 48109, USA data for analysis in the program MrBayes. 5 School of Integrative Plant Sciences, Section of Plant Biology and the Bailey Hortorium, Cornell University, Ithaca, NY 14853, USA KEY RESULTS: Ensete oregonense is confirmed to be part of Musaceae, and the other 6 Author for correspondence (e-mail: [email protected]) seven fossils group with Zingiberaceae. -
(Baker) Ridl. (Zingiberaceae) in Peninsular Malaysia
Gardens’Taxonomic BulletinRevision ofSingapore Geostachys 59 in (1&2):Peninsular 129-138. Malaysia 2007 129 Materials for a Taxonomic Revision of Geostachys (Baker) Ridl. (Zingiberaceae) in Peninsular Malaysia 1 2 3 K.H. LAU , C.K. LIM AND K. MAT-SALLEH 1 Tropical Forest Biodiversity Centre, Biodiversity and Environment Division, Forest Research Institute Malaysia, 52109 Kepong, Selangor, Malaysia. 2 215 Macalister Road, 10450 Penang, Malaysia. 3 School of Environmental and Natural Resource Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor, Malaysia. Abstract Materials for a taxonomic revision of the Geostachys (Baker) Ridl. in Peninsular Malaysia, resulting from recent fieldwork are presented, with notes on the threat assessment of extant species. Twelve of the 13 previously known species were studied in situ, and two newly described species have also been found (Geostachys belumensis C.K. Lim & K.H. Lau and G. erectifrons K.H. Lau, C.K. Lim & K. Mat-Salleh), bringing the current total to 15 taxa, all highland species, found in hill, sub-montane and upper montane forests ranging from 600 m to 2000 m a.s.l. Thirteen out of 15 of the known species are believed to be hyper-endemic, found so far only in their respective type localities. Introduction Geostachys (Baker) Ridl. is a relatively small genus within the Zingiberaceae family, with only 21 species previously recorded. Its distribution ranges from Vietnam, Thailand, Sumatera, Peninsular Malaysia and Borneo. Peninsular Malaysia is the home for most of the species, with 15 taxa scattered in the rain forest of this country (Holttum, 1950; Stone, 1980; Lau et al., 2005). -
Distribution Patterns and Diversity Centres of Zingiberaceae in SE Asia
BS 55 219 Distribution patterns and diversity centres of Zingiberaceae in SE Asia Kai Larsen Larsen, K. 2005. Distribution patterns and diversity centres of Zingiberaceae in SE Asia. Biol. Skr. 55: 219-228. ISSN 0366-3612. ISBN 87-7304-304-4. A revised classification, based on molecular and morphological data, has recently been proposed. The new classification divides the family into four subfamilies. 1: The Tamijioideae including the recently discovered monotypic genus Tamijia from N Borneo. 2: The Siphonochiloideae includ ing the genus Siphonochilus (15) restricted to tropical Africa. The remaining c. 50 genera, with c. 1300 species are classified in two subfamilies: 3: The Alpinioideae, the most widespread, is repre sented by Renealmia (100) in the Neotropics and Africa, Aframomum (50) and Aulotandra (5) in Africa while the remaining c. 20 genera with some 700 species are all from the Asian tropics. 4: The Zingiberoideae, a far more diverse group with c. 30 genera comprising c. 600 species. They are only represented in Asia. The main centre of distribution for the two large subfamilies is SE Asia. The biogeography of all genera from this region is presented and it is shown that the Alpin ioideae have their main centre of diversity in the Malesian region while the Zingiberoideae are centred in the northern monsoon region with Indochina having the highest diversity. In the light of the many recent discoveries of new genera and species it is also stressed that, besides continued studies on the molecular based phylogeny, basic field-work is still highly needed. Kai Larsen, Department of Systematic Botany, Aarhus University. -
Genetic Diversity, Cytology, and Systematic and Phylogenetic Studies in Zingiberaceae
Genes, Genomes and Genomics ©2007 Global Science Books Genetic Diversity, Cytology, and Systematic and Phylogenetic Studies in Zingiberaceae Shakeel Ahmad Jatoi1,2* • Akira Kikuchi1 • Kazuo N. Watanabe1 1 Gene Research Center, Graduate School of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8572, Japan 2 Plant Genetic Resources Program, National Agricultural Research Center, Islamabad- 45500, Pakistan Corresponding author : * [email protected] ABSTRACT Members of the Zingiberaceae, one of the largest families of the plant kingdom, are major contributors to the undergrowth of the tropical rain and monsoon forests, mostly in Asia. They are also the most commonly used gingers, of which the genera Alpinia, Amomum, Curcuma, and Zingiber, followed by Boesenbergia, Kaempferia, Elettaria, Elettariopsis, Etlingera, and Hedychium are the most important. Most species are rhizomatous, and their propagation often occurs through rhizomes. The advent of molecular systematics has aided and accelerated phylogenetic studies in Zingiberaceae, which in turn have led to the proposal of a new classification for this family. The floral and reproductive biology of several species remain poorly understood, and only a few studies have examined the breeding systems and pollination mechanisms. Polyploidy, aneuploidy, and structural changes in chromosomes have played an important role in the evolution of the Zingiberaceae. However, information such as the basic, gametic, and diploid chromosome number is known for only -
The Evolution of Elettariopsis (Zingiberaceae) Evoluce Rodu Elettariopsis (Zingiberaceae)
Univerzita Karlova v Praze Přírodovědecká fakulta Studijní program: Biologie Studijní obor: Cévnaté rostliny Kristýna Hlavatá The evolution of Elettariopsis (Zingiberaceae) Evoluce rodu Elettariopsis (Zingiberaceae) Diplomová práce Školitel: Mgr. Tomáš Fér, Ph.D. Konzultant: Dr. Jana Leong-Škorničková Prohlášení: Prohlašuji, že jsem závěrečnou práci zpracovala samostatně a že jsem uvedla všechny použité informační zdroje a literaturu. Tato práce ani její podstatná část nebyla předložena k získání jiného nebo stejného akademického titulu. V Praze dne 14. 08. 2014 Podpis 2 Abstract This work attempts to offer an insight into the problematic of the genus Elettariopsis Baker, the last unrevised genus in the subfamily Alpinioideae (Zingiberaceae). Phylogenetic analyses are performed on ITS, matK and DCS sequence data and correlated with absolute genome size and biogeographical distribution of the samples. Elettariopsis as a genus is found to be weakly supported and strongly supported only with the addition of some species of Amomum Roxb., including the type species A. subulatum. The absolute genome size in this group is greater than in the outgroup represented by members of the Zingiberoideae subfamily. The evidence given by sequence data further suggests that Elettariopsis is divided into two well-supported groups, the “E. curtisii” group and the “E. triloba/E. unifolia” group, each of which contains several well-supported clades. In the analysis of absolute genome size it is shown that the absolute genome size in the “E. triloba/E.unifolia” group is higher than in the “E. curtisii” group. These two groups also differ slightly in their biogeographical distribution, with group G being distributed in only in Vietnam, Laos, and Thailand, while members of group H are also occurring in Singapore and Indonesia (Borneo).