A Novel Proline, Glycine: K+ Symporter in Midgut Brush-Border Membrane Vesicles from Larval Manduca Sexta
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Al Exposure Increases Proline Levels by Different Pathways in An
www.nature.com/scientificreports OPEN Al exposure increases proline levels by diferent pathways in an Al‑sensitive and an Al‑tolerant rye genotype Alexandra de Sousa1,2, Hamada AbdElgawad2,4, Fernanda Fidalgo1, Jorge Teixeira1, Manuela Matos3, Badreldin A. Hamed4, Samy Selim5, Wael N. Hozzein6, Gerrit T. S. Beemster2 & Han Asard2* Aluminium (Al) toxicity limits crop productivity, particularly at low soil pH. Proline (Pro) plays a role in protecting plants against various abiotic stresses. Using the relatively Al‑tolerant cereal rye (Secale cereale L.), we evaluated Pro metabolism in roots and shoots of two genotypes difering in Al tolerance, var. RioDeva (sensitive) and var. Beira (tolerant). Most enzyme activities and metabolites of Pro biosynthesis were analysed. Al induced increases in Pro levels in each genotype, but the mechanisms were diferent and were also diferent between roots and shoots. The Al‑tolerant genotype accumulated highest Pro levels and this stronger increase was ascribed to simultaneous activation of the ornithine (Orn)‑biosynthetic pathway and decrease in Pro oxidation. The Orn pathway was particularly enhanced in roots. Nitrate reductase (NR) activity, N levels, and N/C ratios demonstrate that N‑metabolism is less inhibited in the Al‑tolerant line. The correlation between Pro changes and diferences in Al‑sensitivity between these two genotypes, supports a role for Pro in Al tolerance. Our results suggest that diferential responses in Pro biosynthesis may be linked to N‑availability. Understanding the role of Pro in diferences between genotypes in stress responses, could be valuable in plant selection and breeding for Al resistance. Proline (Pro) is involved in a wide range of plant physiological and developmental processes1. -
Amino Acid Recognition by Aminoacyl-Trna Synthetases
www.nature.com/scientificreports OPEN The structural basis of the genetic code: amino acid recognition by aminoacyl‑tRNA synthetases Florian Kaiser1,2,4*, Sarah Krautwurst3,4, Sebastian Salentin1, V. Joachim Haupt1,2, Christoph Leberecht3, Sebastian Bittrich3, Dirk Labudde3 & Michael Schroeder1 Storage and directed transfer of information is the key requirement for the development of life. Yet any information stored on our genes is useless without its correct interpretation. The genetic code defnes the rule set to decode this information. Aminoacyl-tRNA synthetases are at the heart of this process. We extensively characterize how these enzymes distinguish all natural amino acids based on the computational analysis of crystallographic structure data. The results of this meta-analysis show that the correct read-out of genetic information is a delicate interplay between the composition of the binding site, non-covalent interactions, error correction mechanisms, and steric efects. One of the most profound open questions in biology is how the genetic code was established. While proteins are encoded by nucleic acid blueprints, decoding this information in turn requires proteins. Te emergence of this self-referencing system poses a chicken-or-egg dilemma and its origin is still heavily debated 1,2. Aminoacyl-tRNA synthetases (aaRSs) implement the correct assignment of amino acids to their codons and are thus inherently connected to the emergence of genetic coding. Tese enzymes link tRNA molecules with their amino acid cargo and are consequently vital for protein biosynthesis. Beside the correct recognition of tRNA features3, highly specifc non-covalent interactions in the binding sites of aaRSs are required to correctly detect the designated amino acid4–7 and to prevent errors in biosynthesis5,8. -
Targeting Glycine Reuptake in Alcohol Seeking and Relapse
JPET Fast Forward. Published on January 24, 2018 as DOI: 10.1124/jpet.117.244822 This article has not been copyedited and formatted. The final version may differ from this version. TITLE PAGE Targeting Glycine Reuptake in Alcohol Seeking and Relapse Valentina Vengeliene, Martin Roßmanith, Tatiane T. Takahashi, Daniela Alberati, Berthold Behl, Anton Bespalov, Rainer Spanagel Downloaded from The primary laboratory of origin: Institute of Psychopharmacology, Central Institute of jpet.aspetjournals.org Mental Health, Faculty of Medicine Mannheim, Heidelberg University, Germany; at ASPET Journals on September 30, 2021 VV, MR, TTT, RS: Institute of Psychopharmacology, Central Institute of Mental Health, Faculty of Medicine Mannheim, Heidelberg University, Germany; DA: Roche Pharma Research and Early Development, Neuroscience, Ophthalmology and Rare Diseases, Roche Innovation Center Basel, CH-4070 Basel, Switzerland; BB, AB: Department of Neuroscience Research, AbbVie Deutschland GmbH & Co. KG, Ludwigshafen, Germany; AB: Department of Psychopharmacology, Pavlov Medical University, St Petersburg, Russia JPET #244822 JPET Fast Forward. Published on January 24, 2018 as DOI: 10.1124/jpet.117.244822 This article has not been copyedited and formatted. The final version may differ from this version. RUNNING TITLE GlyT1 in Alcohol Seeking and Relapse Corresponding author with complete address: Valentina Vengeliene, Institute of Psychopharmacology, Central Institute of Mental Health (CIMH), J5, 68159 Mannheim, Germany Email: [email protected], phone: +49-621-17036261; fax: +49-621- Downloaded from 17036255 jpet.aspetjournals.org The number of text pages: 33 Number of tables: 0 Number of figures: 6 Number of references: 44 at ASPET Journals on September 30, 2021 Number of words in the Abstract: 153 Number of words in the Introduction: 729 Number of words in the Discussion: 999 A recommended section assignment to guide the listing in the table of content: Drug Discovery and Translational Medicine 2 JPET #244822 JPET Fast Forward. -
Transport of Sugars
BI84CH32-Frommer ARI 29 April 2015 12:34 Transport of Sugars Li-Qing Chen,1,∗ Lily S. Cheung,1,∗ Liang Feng,3 Widmar Tanner,2 and Wolf B. Frommer1 1Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305; email: [email protected] 2Zellbiologie und Pflanzenbiochemie, Universitat¨ Regensburg, 93040 Regensburg, Germany 3Department of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, California 94305 Annu. Rev. Biochem. 2015. 84:865–94 Keywords First published online as a Review in Advance on glucose, sucrose, carrier, GLUT, SGLT, SWEET March 5, 2015 The Annual Review of Biochemistry is online at Abstract biochem.annualreviews.org Soluble sugars serve five main purposes in multicellular organisms: as sources This article’s doi: of carbon skeletons, osmolytes, signals, and transient energy storage and as 10.1146/annurev-biochem-060614-033904 transport molecules. Most sugars are derived from photosynthetic organ- Copyright c 2015 by Annual Reviews. isms, particularly plants. In multicellular organisms, some cells specialize All rights reserved in providing sugars to other cells (e.g., intestinal and liver cells in animals, ∗ These authors contributed equally to this review. photosynthetic cells in plants), whereas others depend completely on an ex- Annu. Rev. Biochem. 2015.84:865-894. Downloaded from www.annualreviews.org ternal supply (e.g., brain cells, roots and seeds). This cellular exchange of Access provided by b-on: Universidade de Lisboa (UL) on 09/05/16. For personal use only. sugars requires transport proteins to mediate uptake or release from cells or subcellular compartments. Thus, not surprisingly, sugar transport is criti- cal for plants, animals, and humans. -
Demonstration of Imino Acids As Products of the Reactions Catalyzed by D- and L-Amino Acid Oxidases
Proc. Nat. Acad. Sci. USA Vol. 68, No. ;i, pp. 987-991, Mlay 1971 Demonstration of Imino Acids as Products of the Reactions Catalyzed by D- and L-Amino Acid Oxidases EDMUND W. HAFNER AND DANIEL WELLNER Department of Biochemistry, Cornell University Medical College, New York, N.Y. 10021 Communicated by Alton Meister, February 23, 1971 ABSTRACT It had long been thought, but never dem- from the enzyme as the primary oxidation product. Other in- onstrated, that imino acids are formed in the reactions terpretations, however, are not (see catalyzed by D- and L-amino acid oxidases (EC 1.4.3.3 and excluded Discussion be- 1.4.3.2). The formation of imino acids is now shown low). directly by allowing the amino acid oxidase reaction to Coffey, Neims, and Hellerman (9) recently observed that proceed in the presence of NaBH4, when the imino acid is when a mixture of D-amino acid oxidase and ['4C]D-alanine reduced to the corresponding racemic amino acid. Thus, was treated with sodium borohydride, the alanine moiety when NaBH4 is added to a mixture of D-amino acid oxidase and D-alanine, a significant amount of L-alanine is formed. became covalently attached to the enzyme; they subsequently Analogous results are obtained using L-amino acid oxidase found that the labeled protein gave e-N-(1-carboxyethyl)-L- and L-leucine. Since D-amino acid oxidase is active in the lysine on hydrolysis (10). Studies in this laboratory have con- presence of NaBH4, L-alanine continues to be formed un- firmed this finding and have also shown that i- and D-amino til most of the D-isomer is oxidized by the enzyme. -
Low Proline Diet in Type I Hyperprolinaemia
Arch Dis Child: first published as 10.1136/adc.46.245.72 on 1 February 1971. Downloaded from Archives of Disease in Childhood, 1971, 46, 72. Low Proline Diet in Type I Hyperprolinaemia J. T. HARRIES, A. T. PIESOWICZ,* J. W. T. SEAKINS, D. E. M. FRANCIS, and 0. H. WOLFF From The Hospital for Sick Children, and the Institute of Child Health, University of London Harries, J. T., Piesowicz, A. T., Seakins, J. W. T., Francis, D. E. M., and Wolff, 0. H. (1971). Archives of Disease in Childhood, 46, 72. Low proline diet in type I hyperprolinaemia. A diagnosis of Type I hyperprolinaemia was made in a 7-month-old infant who presented with hypocalcaemic convulsions and malabsorp- tion. The plasma levels of proline were grossly raised and the urinary excretion of proline, hydroxyproline, and glycine was increased; neurological development was delayed and there were associated abnormalities of the electroencephalogram, renal tract, and bones. Restriction of dietary proline at the age of 9 months resulted in a prompt fall of plasma levels of proline to normal, and a low proline diet was continued until the age of 27 months when persistence of the biochemical defect was shown. During the period of dietary treatment, growth was satisfactory, mental development improved, and the electroencephalogram, and the renal, skeletal, and intestinal abnormalities disappeared. Proline should be regarded as a 'semi-essential' amino acid in the growing infant. Hyperprolinaemia, appearing in several members balance can be maintained on a proline-free diet copyright. of a family was first described by Scriver, Schafer, (Rose et al., 1955), and therefore the amino acid is and Efron in 1961. -
Amino Acid Chemistry
Handout 4 Amino Acid and Protein Chemistry ANSC 619 PHYSIOLOGICAL CHEMISTRY OF LIVESTOCK SPECIES Amino Acid Chemistry I. Chemistry of amino acids A. General amino acid structure + HN3- 1. All amino acids are carboxylic acids, i.e., they have a –COOH group at the #1 carbon. 2. All amino acids contain an amino group at the #2 carbon (may amino acids have a second amino group). 3. All amino acids are zwitterions – they contain both positive and negative charges at physiological pH. II. Essential and nonessential amino acids A. Nonessential amino acids: can make the carbon skeleton 1. From glycolysis. 2. From the TCA cycle. B. Nonessential if it can be made from an essential amino acid. 1. Amino acid "sparing". 2. May still be essential under some conditions. C. Essential amino acids 1. Branched chain amino acids (isoleucine, leucine and valine) 2. Lysine 3. Methionine 4. Phenyalanine 5. Threonine 6. Tryptophan 1 Handout 4 Amino Acid and Protein Chemistry D. Essential during rapid growth or for optimal health 1. Arginine 2. Histidine E. Nonessential amino acids 1. Alanine (from pyruvate) 2. Aspartate, asparagine (from oxaloacetate) 3. Cysteine (from serine and methionine) 4. Glutamate, glutamine (from α-ketoglutarate) 5. Glycine (from serine) 6. Proline (from glutamate) 7. Serine (from 3-phosphoglycerate) 8. Tyrosine (from phenylalanine) E. Nonessential and not required for protein synthesis 1. Hydroxyproline (made postranslationally from proline) 2. Hydroxylysine (made postranslationally from lysine) III. Acidic, basic, polar, and hydrophobic amino acids A. Acidic amino acids: amino acids that can donate a hydrogen ion (proton) and thereby decrease pH in an aqueous solution 1. -
Distribution of Glucose Transporters in Renal Diseases Leszek Szablewski
Szablewski Journal of Biomedical Science (2017) 24:64 DOI 10.1186/s12929-017-0371-7 REVIEW Open Access Distribution of glucose transporters in renal diseases Leszek Szablewski Abstract Kidneys play an important role in glucose homeostasis. Renal gluconeogenesis prevents hypoglycemia by releasing glucose into the blood stream. Glucose homeostasis is also due, in part, to reabsorption and excretion of hexose in the kidney. Lipid bilayer of plasma membrane is impermeable for glucose, which is hydrophilic and soluble in water. Therefore, transport of glucose across the plasma membrane depends on carrier proteins expressed in the plasma membrane. In humans, there are three families of glucose transporters: GLUT proteins, sodium-dependent glucose transporters (SGLTs) and SWEET. In kidney, only GLUTs and SGLTs protein are expressed. Mutations within genes that code these proteins lead to different renal disorders and diseases. However, diseases, not only renal, such as diabetes, may damage expression and function of renal glucose transporters. Keywords: Kidney, GLUT proteins, SGLT proteins, Diabetes, Familial renal glucosuria, Fanconi-Bickel syndrome, Renal cancers Background Because glucose is hydrophilic and soluble in water, lipid Maintenance of glucose homeostasis prevents pathological bilayer of plasma membrane is impermeable for it. There- consequences due to prolonged hyperglycemia or fore, transport of glucose into cells depends on carrier pro- hypoglycemia. Hyperglycemia leads to a high risk of vascu- teins that are present in the plasma membrane. In humans, lar complications, nephropathy, neuropathy and retinop- there are three families of glucose transporters: GLUT pro- athy. Hypoglycemia may damage the central nervous teins, encoded by SLC2 genes; sodium-dependent glucose system and lead to a higher risk of death. -
Amino Acid Catalyzed Direct Asymmetric Aldol Reactions: a Bioorganic Approach to Catalytic Asymmetric Carbon-Carbon Bond-Forming Reactions
5260 J. Am. Chem. Soc. 2001, 123, 5260-5267 Amino Acid Catalyzed Direct Asymmetric Aldol Reactions: A Bioorganic Approach to Catalytic Asymmetric Carbon-Carbon Bond-Forming Reactions Kandasamy Sakthivel, Wolfgang Notz, Tommy Bui, and Carlos F. Barbas III* Contribution from The Skaggs Institute for Chemical Biology and the Department of Molecular Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037 ReceiVed January 3, 2001 Abstract: Direct asymmetric catalytic aldol reactions have been successfully performed using aldehydes and unmodified ketones together with commercially available chiral cyclic secondary amines as catalysts. Structure- based catalyst screening identified L-proline and 5,5-dimethyl thiazolidinium-4-carboxylate (DMTC) as the most powerful amino acid catalysts for the reaction of both acyclic and cyclic ketones as aldol donors with aromatic and aliphatic aldehydes to afford the corresponding aldol products with high regio-, diastereo-, and enantioselectivities. Reactions employing hydroxyacetone as an aldol donor provide anti-1,2-diols as the major product with ee values up to >99%. The reactions are assumed to proceed via a metal-free Zimmerman- Traxler-type transition state and involve an enamine intermediate. The observed stereochemistry of the products is in accordance with the proposed transition state. Further supporting evidence is provided by the lack of nonlinear effects. The reactions tolerate a small amount of water (<4 vol %), do not require inert reaction conditions and preformed enolate equivalents, and can be conveniently performed at room temperature in various solvents. In addition, reaction conditions that facilitate catalyst recovery as well as immobilization are described. Finally, mechanistically related addition reactions such as ketone additions to imines (Mannich- type reactions) and to nitro-olefins and R,â-unsaturated diesters (Michael-type reactions) have also been developed. -
Proline Oxidase Controls Proline, Glutamate, and Glutamine Cellular Concentrations in a U87 Glioblastoma Cell Line
RESEARCH ARTICLE Proline oxidase controls proline, glutamate, and glutamine cellular concentrations in a U87 glioblastoma cell line Pamela Cappelletti1,2*, Elena Tallarita1, Valentina Rabattoni1, Paola Campomenosi1,2, Silvia Sacchi1,2, Loredano Pollegioni1,2 1 Department of Biotechnology and Life Sciences, University of Insubria, Varese, Italy, 2 The Protein Factory Research Center, Politecnico of Milano and University of Insubria, Milano, Italy a1111111111 * [email protected] a1111111111 a1111111111 a1111111111 a1111111111 Abstract L-Proline is a multifunctional amino acid that plays an essential role in primary metabolism and physiological functions. Proline is oxidized to glutamate in the mitochondria and the FAD-containing enzyme proline oxidase (PO) catalyzes the first step in L-proline degrada- OPEN ACCESS tion pathway. Alterations in proline metabolism have been described in various human dis- Citation: Cappelletti P, Tallarita E, Rabattoni V, eases, such as hyperprolinemia type I, velo-cardio-facial syndrome/Di George syndrome, Campomenosi P, Sacchi S, Pollegioni L (2018) schizophrenia and cancer. In particular, the mutation giving rise to the substitution Leu441- Proline oxidase controls proline, glutamate, and glutamine cellular concentrations in a U87 Pro was identified in patients suffering of schizophrenia and hyperprolinemia type I. Here, glioblastoma cell line. PLoS ONE 13(4): e0196283. we report on the expression of wild-type and L441P variants of human PO in a U87 glioblas- https://doi.org/10.1371/journal.pone.0196283 toma human cell line in an attempt to assess their effect on glutamate metabolism. The sub- Editor: Suzie Chen, Rutgers University, UNITED cellular localization of the flavoenzyme is not altered in the L441P variant, for which specific STATES activity is halved compared to the wild-type PO. -
Sodium-Coupled Secondary Transporters 11 Insights from Structure-Based Computations
b1151_Chapter-11.qxd 5/5/2011 12:27 PM Page 199 b1151 Molecular Machines FA Sodium-coupled Secondary Transporters 11 Insights from Structure-based Computations Elia Zomot, Ahmet Bakan, Indira H. Shrivastava, Jason DeChancie, Timothy R. Lezon and Ivet Bahar 1. Introduction: Biological Function and Classification The biological membrane bilayer is impermeable to almost all polar or charged molecules. In order for the various solutes to cross this barrier, integral membrane proteins have evolved to provide a hydrophilic environment within the membrane that can bind and translocate these solutes into or out of the cell, often against their electrochemical gradient. These transporters are conventionally classified into three classes on the basis of the energy source used for transport: (1) primary active transporters rely on light, hydrolysis of ATP or redox reactions, (2) secondary active transporters require the electrochemical gradient of ions across the membrane to power the “uphill” transloca- tion of the substrate, and (3) precursor/product antiporters exchange one molecule with its metabolic product independent of another source of energy.1,2 A major family of secondary transporters involves sodium- (and less often proton-) depend- ent symporters that couple the energy-costly translocation of the solute into the cell to that of sodium down its electrochemical gradient. These sodium-coupled transporters are found in all species and participate in a myriad biological functions, e.g. maintenance of efficient neuro- transmission,3,4,5 absorption of nutrients in the intestine,6 regulation of pH and cytoplasmic [Na+]7,8 and osmoregulation9,10 are only some of their physiological functions. Of particular interest among sodium-coupled symporters are two families: the dicarboxylate/ amino-acid:cation symporters (DAACS) and the neurotransmitter sodium symporters (NSS). -
Stimulation Effects of Foliar Applied Glycine and Glutamine Amino Acids
Open Agriculture. 2019; 4: 164–172 Research Article Yaghoub Aghaye Noroozlo, Mohammad Kazem Souri*, Mojtaba Delshad Stimulation Effects of Foliar Applied Glycine and Glutamine Amino Acids on Lettuce Growth https://doi.org/10.1515/opag-2019-0016 received June 27, 2018; accepted January 20, 2019 1 Introduction Abstract: Amino acids have various roles in plant In biology, amino acids have vital roles in cell life. Amino metabolism, and exogenous application of amino acids acids are among the most important primary metabolites may have benefits and stimulation effects on plant growth within the plant cells. However, they are frequently and quality. In this study, the growth and nutrient uptake regarded as secondary metabolites, particularly in the of Romain lettuce (Lactuca sativa subvar Sahara) were case of proline, glycine and betaine amino acids. Many evaluated under spray of glycine or glutamine at different physiochemical characteristics of plant cells, tissues and concentrations of 0 (as control), 250, 500 and 1000 organs are influenced by the presence of amino acids (Rai mg.L-1, as well as a treatment of 250 mg.L-1 glycine+250 2002; Marschner 2011). They are the building units of mg.L-1 glutamine. The results showed that there was proteins, as the main component of living cells that have significant increase in leaf total chlorophyll content under vital roles in many cell metabolic reactions (Kielland 1994; Gly250+Glu250, Gly250 and Glu1000 mg.L-1treatments, and Rainbird et al. 1984; Jones and Darrah 1993). In addition, in leaf carotenoids content under 250 mg.L-1 glutamine amino acids have various important biological functions spray compared with the control plants.