Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 3 May 2021 doi:10.20944/preprints202105.0011.v1 Article Molecular Dynamics Simulations and MM/PBSA Analysis of Annocatacin B in ND1 Subunit of Human Mitochondrial Respiratory Complex I Camilo Febres-Molina 1 ; Jorge A. Aguilar-Pineda 1,2 ; Pamela L. Gamero-Begazo 1 ; Haruna L. Barazorda-Ccahuana 1 ; Diego E. Valencia 1 ; Karin J. Vera-López2,4 ; Gonzalo Davila-Del-Carpio3,4 , and Badhin Gómez ∗,1,4 1 Centro de Investigación en Ingeniería Molecular - CIIM, Universidad Católica de Santa María, Urb. San José s/n - Umacollo, Arequipa, Perú 2 Laboratory of Genomics and Neurovascular Diseases, Vicerrectorado de Investigación, Universidad Católica de Santa María, Arequipa, Peru. 3 Vicerrectorado de Investigación, Universidad Católica de Santa María, Arequipa, Perú. 4 Facultad de Ciencias Farmacéuticas, Bioquímicas y Biotecnológicas, Universidad Católica de Santa María, Urb. San José s/n - Umacollo, Arequipa, Perú * Correspondence:
[email protected]; Tel.: +51-982895967 1 Abstract: ND1 subunit possesses the majority of the inhibitor binding domain of the human 2 MRC-I. This is an attractive target for the search for new inhibitors that seek mitochondrial 3 dysfunction. It is known, from in vitro experiments, some metabolites from Annona muricata called 4 acetogenins have important biological activities such as anticancer, antiparasitic, and insecticide. 5 Previous studies propose an inhibitory activity of bovine MRC-I by bis-THF acetogenins such 6 as annocatacin B, however, there are few studies on its inhibitory effect on human MRC-I. In 7 this work, we evaluate the molecular and energetic affinity of the annocatacin B molecule with 8 the human ND1 subunit in order to elucidate its potential capacity to be a good inhibitor of this 9 subunit.