Osmotrophy in Modular Ediacara Organisms
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Ediacaran) of Earth – Nature’S Experiments
The Early Animals (Ediacaran) of Earth – Nature’s Experiments Donald Baumgartner Medical Entomologist, Biologist, and Fossil Enthusiast Presentation before Chicago Rocks and Mineral Society May 10, 2014 Illinois Famous for Pennsylvanian Fossils 3 In the Beginning: The Big Bang . Earth formed 4.6 billion years ago Fossil Record Order 95% of higher taxa: Random plant divisions domains & kingdoms Cambrian Atdabanian Fauna Vendian Tommotian Fauna Ediacaran Fauna protists Proterozoic algae McConnell (Baptist)College Pre C - Fossil Order Archaean bacteria Source: Truett Kurt Wise The First Cells . 3.8 billion years ago, oxygen levels in atmosphere and seas were low • Early prokaryotic cells probably were anaerobic • Stromatolites . Divergence separated bacteria from ancestors of archaeans and eukaryotes Stromatolites Dominated the Earth Stromatolites of cyanobacteria ruled the Earth from 3.8 b.y. to 600 m. [2.5 b.y.]. Believed that Earth glaciations are correlated with great demise of stromatolites world-wide. 8 The Oxygen Atmosphere . Cyanobacteria evolved an oxygen-releasing, noncyclic pathway of photosynthesis • Changed Earth’s atmosphere . Increased oxygen favored aerobic respiration Early Multi-Cellular Life Was Born Eosphaera & Kakabekia at 2 b.y in Canada Gunflint Chert 11 Earliest Multi-Cellular Metazoan Life (1) Alga Eukaryote Grypania of MI at 1.85 b.y. MI fossil outcrop 12 Earliest Multi-Cellular Metazoan Life (2) Beads Horodyskia of MT and Aust. at 1.5 b.y. thought to be algae 13 Source: Fedonkin et al. 2007 Rise of Animals Tappania Fungus at 1.5 b.y Described now from China, Russia, Canada, India, & Australia 14 Earliest Multi-Cellular Metazoan Animals (3) Worm-like Parmia of N.E. -
A Morphological Re-Description of Ploeotia Pseudanisonema, and Phylogenetic Analysis of the Genus Ploeotia
A Morphological Re-Description of Ploeotia pseudanisonema, and Phylogenetic Analysis of the Genus Ploeotia by Andrew Buren Brooks (Under the direction of Mark A. Farmer) Abstract The genus Ploeotia represents a group of small, colorless, heterotrophic euglenids commonly found in shallow-water marine sediments. Species belonging to this genus have histori- cally been poorly described and studied. However, a Group I intron discovered within the small subunit ribosomal DNA gene of Ploeotia costata, makes P. costata the only euglena- zoan known to possess an actively splicing Group I intron. This intron contains conserved secondary structures that indicate monophyly with introns found in Stramenopiles and Ban- giales red algae. This project describes the internal and external morphology of a related species, Ploeotia pseudanisonema, using light and electron microscopy, and investigates the possibility of a Group I intron within P. pseudanisonema. Using recently obtained SSU rRNA sequences, we also examine the phylogeny of Ploeotia, and comment on the relationship of the genus Keelungia to Ploeotia. Index words: Ploeotia pseudanisonema, Ploeotia costata, Ploeotia vitrea, Keelungia pulex, Transmission electron microscopy, Scanning electron microscopy, Small subunit rRNA, Euglenozoan Phylogeny A Morphological Re-Description of Ploeotia pseudanisonema, and Phylogenetic Analysis of the Genus Ploeotia by Andrew Buren Brooks B.S., University of Alabama, 2009 A Thesis Submitted to the Graduate Faculty of The University of Georgia in Partial Fulfillment of the Requirements for the Degree Master of Science Athens, Georgia 2010 c 2014 Andrew Buren Brooks All Right Reserved A Morphological Re-Description of Ploeotia pseudanisonema, and Phylogenetic Analysis of the Genus Ploeotia by Andrew Buren Brooks Approved: Major Professor: Mark A. -
Medical Parasitology
MEDICAL PARASITOLOGY Anna B. Semerjyan Marina G. Susanyan Yerevan State Medical University Yerevan 2020 1 Chapter 15 Medical Parasitology. General understandings Parasitology is the study of parasites, their hosts, and the relationship between them. Medical Parasitology focuses on parasites which cause diseases in humans. Awareness and understanding about medically important parasites is necessary for proper diagnosis, prevention and treatment of parasitic diseases. The most important element in diagnosing a parasitic infection is the knowledge of the biology, or life cycle, of the parasites. Medical parasitology traditionally has included the study of three major groups of animals: 1. Parasitic protozoa (protists). 2. Parasitic worms (helminthes). 3. Arthropods that directly cause disease or act as transmitters of various pathogens. Parasitism is a form of association between organisms of different species known as symbiosis. Symbiosis means literally “living together”. Symbiosis can be between any plant, animal, or protist that is intimately associated with another organism of a different species. The most common types of symbiosis are commensalism, mutualism and parasitism. 1. Commensalism involves one-way benefit, but no harm is exerted in either direction. For example, mouth amoeba Entamoeba gingivalis, uses human for habitat (mouth cavity) and for food source without harming the host organism. 2. Mutualism is a highly interdependent association, in which both partners benefit from the relationship: two-way (mutual) benefit and no harm. Each member depends upon the other. For example, in humans’ large intestine the bacterium Escherichia coli produces the complex of vitamin B and suppresses pathogenic fungi, bacteria, while sheltering and getting nutrients in the intestine. 3. -
Mixotrophic Protists Among Marine Ciliates and Dinoflagellates: Distribution, Physiology and Ecology
FACULTY OF SCIENCE UNIVERSITY OF COPENHAGEN PhD thesis Woraporn Tarangkoon Mixotrophic Protists among Marine Ciliates and Dinoflagellates: Distribution, Physiology and Ecology Academic advisor: Associate Professor Per Juel Hansen Submitted: 29/04/10 Contents List of publications 3 Preface 4 Summary 6 Sammenfating (Danish summary) 8 สรุป (Thai summary) 10 The sections and objectives of the thesis 12 Introduction 14 1) Mixotrophy among marine planktonic protists 14 1.1) The role of light, food concentration and nutrients for 17 the growth of marine mixotrophic planktonic protists 1.2) Importance of marine mixotrophic protists in the 20 planktonic food web 2) Marine symbiont-bearing dinoflagellates 24 2.1) Occurrence of symbionts in the order Dinophysiales 24 2.2) The spatial distribution of symbiont-bearing dinoflagellates in 27 marine waters 2.3) The role of symbionts and phagotrophy in dinoflagellates with symbionts 28 3) Symbiosis and mixotrophy in the marine ciliate genus Mesodinium 30 3.1) Occurrence of symbiosis in Mesodinium spp. 30 3.2) The distribution of marine Mesodinium spp. 30 3.3) The role of symbionts and phagotrophy in marine Mesodinium rubrum 33 and Mesodinium pulex Conclusion and future perspectives 36 References 38 Paper I Paper II Paper III Appendix-Paper IV Appendix-I Lists of publications The thesis consists of the following papers, referred to in the synthesis by their roman numerals. Co-author statements are attached to the thesis (Appendix-I). Paper I Tarangkoon W, Hansen G Hansen PJ (2010) Spatial distribution of symbiont-bearing dinoflagellates in the Indian Ocean in relation to oceanographic regimes. Aquat Microb Ecol 58:197-213. -
Fungal Genomes Tell a Story of Ecological Adaptations
Folia Biologica et Oecologica 10: 9–17 (2014) Acta Universitatis Lodziensis Fungal genomes tell a story of ecological adaptations ANNA MUSZEWSKA Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawinskiego 5A, 02-106 Warsaw, Poland E-mail: [email protected] ABSTRACT One genome enables a fungus to have various lifestyles and strategies depending on environmental conditions and in the presence of specific counterparts. The nature of their interactions with other living and abiotic elements is a consequence of their osmotrophism. The ability to degrade complex compounds and especially plant biomass makes them a key component of the global carbon circulation cycle. Since the first fungal genomic sequence was published in 1996 mycology has benefited from the technolgical progress. The available data create an unprecedented opportunity to perform massive comparative studies with complex study design variants targeted at all cellular processes. KEY WORDS: fungal genomics, osmotroph, pathogenic fungi, mycorrhiza, symbiotic fungi, HGT Fungal ecology is a consequence of osmotrophy Fungi play a pivotal role both in encountered as leaf endosymbionts industry and human health (Fisher et al. (Spatafora et al. 2007). Since fungi are 2012). They are involved in biomass involved in complex relationships with degradation, plant and animal infections, other organisms, their ecological fermentation and chemical industry etc. repertoire is reflected in their genomes. They can be present in the form of The nature of their interactions with other resting spores, motile spores, amebae (in organisms and environment is defined by Cryptomycota, Blastocladiomycota, their osmotrophic lifestyle. Nutrient Chytrydiomycota), hyphae or fruiting acquisition and communication with bodies. The same fungal species symbionts and hosts are mediated by depending on environmental conditions secreted molecules. -
Mcmenamin FM
The Garden of Ediacara • Frontispiece: The Nama Group, Aus, Namibia, August 9, 1993. From left to right, A. Seilacher, E. Seilacher, P. Seilacher, M. McMenamin, H. Luginsland, and F. Pflüger. Photograph by C. K. Brain. The Garden of Ediacara • Discovering the First Complex Life Mark A. S. McMenamin C Columbia University Press New York C Columbia University Press Publishers Since 1893 New York Chichester, West Sussex Copyright © 1998 Columbia University Press All rights reserved Library of Congress Cataloging-in-Publication Data McMenamin, Mark A. The garden of Ediacara : discovering the first complex life / Mark A. S. McMenamin. p. cm. Includes bibliographical references and index. ISBN 0-231-10558-4 (cloth) — ISBN 0–231–10559–2 (pbk.) 1. Paleontology—Precambrian. 2. Fossils. I. Title. QE724.M364 1998 560'.171—dc21 97-38073 Casebound editions of Columbia University Press books are printed on permanent and durable acid-free paper. Printed in the United States of America c 10 9 8 7 6 5 4 3 2 1 p 10 9 8 7 6 5 4 3 2 1 For Gene Foley Desert Rat par excellence and to the memory of Professor Gonzalo Vidal This page intentionally left blank Contents Foreword • ix Preface • xiii Acknowledgments • xv 1. Mystery Fossil 1 2. The Sand Menagerie 11 3. Vermiforma 47 4. The Nama Group 61 5. Back to the Garden 121 6. Cloudina 157 7. Ophrydium 167 8. Reunite Rodinia! 173 9. The Mexican Find: Sonora 1995 189 10. The Lost World 213 11. A Family Tree 225 12. Awareness of Ediacara 239 13. Revenge of the Mole Rats 255 Epilogue: Parallel Evolution • 279 Appendix • 283 Index • 285 This page intentionally left blank Foreword Dorion Sagan Virtually as soon as earth’s crust cools enough to be hospitable to life, we find evidence of life on its surface. -
New High‐Resolution Age Data from the Ediacaran–Cambrian Boundary Indicate Rapid, Ecologically Driven Onset of the Cambrian Explosion
Received: 14 June 2018 | Revised: 6 October 2018 | Accepted: 19 October 2018 DOI: 10.1111/ter.12368 PAPER New high‐resolution age data from the Ediacaran–Cambrian boundary indicate rapid, ecologically driven onset of the Cambrian explosion Ulf Linnemann1 | Maria Ovtcharova2 | Urs Schaltegger2 | Andreas Gärtner1 | Michael Hautmann3 | Gerd Geyer4 | Patricia Vickers-Rich5,6,7 | Tom Rich6 | Birgit Plessen8 | Mandy Hofmann1 | Johannes Zieger1 | Rita Krause1 | Les Kriesfeld7 | Jeff Smith7 1Senckenberg Collections of Natural History Dresden, Museum of Mineralogy Abstract and Geology, Dresden, Germany The replacement of the late Precambrian Ediacaran biota by morphologically disparate 2Département des Sciences de la Terre, animals at the beginning of the Phanerozoic was a key event in the history of life on University of Geneva, Genève, Switzerland ‐ 3Paläontologisches Institut und Museum, Earth, the mechanisms and the time scales of which are not entirely understood. A Zürich, Switzerland composite section in Namibia providing biostratigraphic and chemostratigraphic data 4 Bayerische Julius-Maximilians-Universität, bracketed by radiometric dating constrains the Ediacaran–Cambrian boundary to Lehrstuhl für Geodynamik und Geomaterialforschung, Würzburg, Germany 538.6–538.8 Ma, more than 2 Ma younger than previously assumed. The U–Pb‐CA‐ID 5Department of Chemistry and TIMS zircon ages demonstrate an ultrashort time frame for the LAD of the Ediacaran Biotechnology, Swinburne University of Technology, Melbourne (Hawthorne), biota to the FAD of a complex, burrowing Phanerozoic biota represented by trace fos- Victoria, Australia sils to a 410 ka time window of 538.99 ± 0.21 Ma to 538.58 ± 0.19 Ma. The extre- 6 Museums Victoria, Melbourne, Victoria, mely short duration of the faunal transition from Ediacaran to Cambrian biota within Australia less than 410 ka supports models of ecological cascades that followed the evolution- 7School of Earth, Atmosphere and Environment, Monash University, ary breakthrough of increased mobility at the beginning of the Phanerozoic. -
New Ediacara Fossils Preserved in Marine Limestone and Their Ecological Implications
OPEN New Ediacara fossils preserved in SUBJECT AREAS: marine limestone and their ecological PALAEONTOLOGY GEOLOGY implications Zhe Chen1, Chuanming Zhou1, Shuhai Xiao2, Wei Wang1, Chengguo Guan1, Hong Hua3 & Xunlai Yuan1 Received 22 November 2013 1LPS and LESP, Nanjing Institute of Geology and Palaeontology, Chinese Academy of Sciences, Nanjing 210008, China, Accepted 2Department of Geosciences, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA, 3State Key Laboratory 7 February 2014 of Continental Dynamics and Department of Geology, Northwest University, Xi’an 710069, China. Published 25 February 2014 Ediacara fossils are central to our understanding of animal evolution on the eve of the Cambrian explosion, because some of them likely represent stem-group marine animals. However, some of the iconic Ediacara fossils have also been interpreted as terrestrial lichens or microbial colonies. Our ability to test these hypotheses is limited by a taphonomic bias that most Ediacara fossils are preserved in sandstones and Correspondence and siltstones. Here we report several iconic Ediacara fossils and an annulated tubular fossil (reconstructed as an requests for materials erect epibenthic organism with uniserial arranged modular units), from marine limestone of the 551– should be addressed to 541 Ma Dengying Formation in South China. These fossils significantly expand the ecological ranges of Z.C. (zhechen@ several key Ediacara taxa and support that they are marine organisms rather than terrestrial lichens or nigpas.ac.cn) or microbial colonies. Their close association with abundant bilaterian burrows also indicates that they could tolerate and may have survived moderate levels of bioturbation. S.H.X. ([email protected]) he Ediacara biota, exemplified by fossils preserved in the Ediacara Member of South Australia, provides key information about the origin, diversification, and disappearance of a distinct group of soft-bodied, mac- T roscopic organisms on the eve of the Cambrian diversification of marine animals1–3. -
Horizontal Gene Transfer in Osmotrophs: Playing with Public Goods
ORE Open Research Exeter TITLE Horizontal gene transfer in osmotrophs: playing with public goods. AUTHORS Richards, Thomas A; Talbot, Nicholas J. JOURNAL Nat Rev Microbiol DEPOSITED IN ORE 19 November 2014 This version available at http://hdl.handle.net/10871/15898 COPYRIGHT AND REUSE Open Research Exeter makes this work available in accordance with publisher policies. A NOTE ON VERSIONS The version presented here may differ from the published version. If citing, you are advised to consult the published version for pagination, volume/issue and date of publication PERSPECTIVES however, not unique to fungi. Many bacteria, OPINION for instance, feed in an analogous man ner, and other eukaryotic groups, such as Horizontal gene transfer in hyphochytriomycetes (FIG. 1c) and oomycetes (FIG. 1d) (sometimes collectively termed the pseudofungi26), also feed osmotrophically osmotrophs: playing with public and adopt filamentous growth habits, allow ing invasive growth in heterogeneous sub goods strates. Importantly, these eukaryotes also lost the ability to carry out phagotrophy and Thomas A. Richards and Nicholas J. Talbot became obligately osmotrophic26,27. Osmotrophy has a number of distinct Abstract | Osmotrophic microorganisms, such as fungi and oomycetes, feed advantages as a feeding strategy. External by secreting depolymerizing enzymes to process complex food sources in the digestion of large and complex polymers extracellular environment, and taking up the resulting simple sugars, micronutrients allows greater control over substances that and amino acids. As a consequence of this lifestyle, osmotrophs engage in the are allowed to enter a cell (FIG. 2a), thus acquisition and protection of public goods. In this Opinion article, we propose that minimizing potential routes of infection and intake of harmful substances. -
The Ecology and Feeding Biology of Thecate
-1- THE ECOLOGY AND FEEDING BIOLOGY OF THECATE HETEROTROPHIC DINOFLAGELLATES by Dean Martin Jacobson A.B., Occidental College 1979 SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution February, 1987 e Dean Martin Jacobson The author hereby grants to M.I.T. and W.H.O.I. permission to reproduce and to distribute copies of this thesis document in whole or in part. Signature of Au thor_--.....~-=-~~_ ...........~iIlfII"I'V"-...........,.;..p;-~~ _ Department of Biology, Ma sac usetts Institute of Technology and the Joint Program in Ocea og aphy, Massachusetts Institute of Technology/Woods Hole Ocea graphic Institution, February, 1986. Certified by _----L~...-:c-.:.• ......:::z:..::-~-::..,.c£....=:....------:...--------------- Donald M. A~rsont Thesis Supervisor Accepted by --"X:,,-==~,e:--..;;-,------.;;;,.-------------------- Sallie W. Chisholm, Chairman, Joint Committee for Biological Oceanography, Massachusetts Institute of Technology/Woods Hole Oceanographic Institution. -2- -3- Table of Contents List of Figures and Tables 5 Abstract. 7 Aknow1edgements •••••••••••.••••••••••••••••••••••••••.•••••••••••••.•• 9 Introduction 11 References .••••••••••••••••••••••••••••••••••••••••••••••••••••. 21 Chapter 1. Population Dynamics of Heterotrophic Dinoflagellates in a Temperate Esturary •••••••••••••••••••••••••••••••••••• 23 Abstract 25 Introduction ••••..•••.••.••••••.•••••••••••.•••••••••••.•••.••.• 26 Methods -
NEW FAIJNAL DISCOVERIES in the LATE NEOPROTEROZOIC of SOUTH ~~USTRALIA Ai'j"D THEIR POTENTIAL SIGNIFICANCE in the EMERGING CHRONOMETRY of the EDIACARAN
197 NEW FAIJNAL DISCOVERIES IN THE LATE NEOPROTEROZOIC OF SOUTH ~~USTRALIA Ai'J"D THEIR POTENTIAL SIGNIFICANCE IN THE EMERGING CHRONOMETRY OF THE EDIACARAN. JENKlNS*, Richard F.J. and NEDIN, Christopher, Dept. of Geology and Geophysics, The University of Adelaide, 4~delaide, SA, 5005, AUSTRALIA. Investigation of the late Neoproteozoic Rawnsley Quartzite in the western Hinders Ranges has disclosed four additional, hitherto unsuspected, erosive sequence tract boundaries. The base of the shorefacelintertidal 'member l' of the Rawnsley QUaltzite overlies the fluviatile and paralic Bonney Sandstone at an erosive surface which locally exhibits low angle (c. 2°) discordance. Further erosive surfaces separate member 1 from the transgressive-regressive cycles of members '2' and '3' as well as the well known Ediacara Member, which contains the type Ediacara assemblage of soft-bodied metazoan remains. Another downcutting surface occurs at the top of this member and a further one at the local base of the Cambrian. The sequence boundaries within the Rawnsley Quartzite locally erode down c. 10 - 30m through underlying strata, but the surface below 'member 3' forms deep channels with up to c. 175m of relief. Small discoidal 'fossil' remains occur rarely in the Bonney Sandstone and earlier evidence of metazoans extends down to the upper Wonoka Formation. Careful search of 'member l' of the Rawnsley Quartzite has so far revealed only net-like imprints assumed to be moulds of cyanobacterial mats. 'Member 2' includes a diverse fauna with Rangea- and Emietta-like forms, a Pteridinium sp., Kullingia, Hiemalora, rare Tribrachidium, rare Dickinsonia (2 species), common simple trace fossils and 'Chondrites'. -
Taphonomy of the Ediacaran Fossil Pteridinium Simplex Preserved Three
Taphonomy of the Ediacaran Fossil Pteridinium Simplex Preserved Three- Dimensionally in Mass Flow Deposits, Nama Group, Namibia Author(s): Mike Meyer , David Elliott , James D. Schiffbauer , Michael Hall , Karl H. Hoffman , Gabi Schneider , Patricia Vickers-Rich , and Shuhai Xiao Source: Journal of Paleontology, 88(2):240-252. 2014. Published By: The Paleontological Society DOI: http://dx.doi.org/10.1666/13-047 URL: http://www.bioone.org/doi/full/10.1666/13-047 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Journal of Paleontology, 88(2), 2014, p. 240–252 Copyright Ó 2014, The Paleontological Society 0022-3360/14/0088-0240$03.00 DOI: 10.1666/13-047 TAPHONOMY OF THE EDIACARAN FOSSIL PTERIDINIUM SIMPLEX PRESERVED THREE-DIMENSIONALLY IN MASS FLOW DEPOSITS, NAMA GROUP, NAMIBIA MIKE MEYER,1,5 DAVID ELLIOTT,2 JAMES D. SCHIFFBAUER,3 MICHAEL HALL,2 KARL H.