Consequences of Interspecific Variation in Defenses and Herbivore
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Whole-Genome Data Reveal the Complex History of a Diverse Ecological Community
Whole-genome data reveal the complex history of a diverse ecological community Lynsey Bunnefelda,b,1,2, Jack Hearna,1, Graham N. Stonea,3, and Konrad Lohsea,3 aInstitute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3FL, Scotland; and bBiological & Environmental Sciences, University of Stirling, Stirling FK9 4LA, Scotland Edited by Craig Moritz, Australian National University, Canberra, ACT, Australia, and accepted by Editorial Board Member Douglas Futuyma May 30, 2018 (received for review January 8, 2018) How widespread ecological communities assemble remains a key Concordant population histories are expected in obligate question in ecology. Trophic interactions between widespread species associations, such as those between plants and special- species may reflect a shared population history or ecological ist pollinators, and these commonly show both coevolution of fitting of local pools of species with very different population his- associated traits and codiversification of the lineages involved tories. Which scenario applies is central to the stability of trophic (6, 7). However, much of terrestrial diversity is found in com- associations and the potential for coevolution between species. munities dominated by less specific interactions between guilds Here we show how alternative community assembly hypotheses of species, for which either codispersal or ecological fitting is can be discriminated using whole-genome data for component a plausible assembly mechanism. These are exemplified by the species and provide a likelihood framework that overcomes cur- rich insect communities associated with temperate trees, in which rent limitations in formal comparison of multispecies histories. widespread herbivores are commonly attacked by a consistent set We illustrate our approach by inferring the assembly history of of parasitoid enemies (8, 9). -
Floristic, Diversity and Spatial Distribution of Tree Species in a Dry Forest in Southern Brazil
Freitas et al.: Floristic diversity and spatial distribution of tree species - 511 - FLORISTIC, DIVERSITY AND SPATIAL DISTRIBUTION OF TREE SPECIES IN A DRY FOREST IN SOUTHERN BRAZIL FREITAS, W. K.1* ‒ MAGALHÃES, L. M. S.2 ‒ VIVÈS, L. R.1 1Postgraduate Program in Environmental Technology - PGTA – Fluminense Federal University – UFF. Av. dos Trabalhadores, 420, 27.255-125, Vila Santa Cecília, Volta Redonda, RJ, Brasil (e-mail: [email protected]) 2Department of Environmental Sciences and the Postgraduate Program in Sustainable Development Practices - PPGPDS – Rural Federal University of Rio de Janeiro – UFRRJ, Rod. BR-465, km 7,23851-970, Seropédica, RJ, Brasil (e-mail: [email protected]) *Corresponding author e-mail: [email protected]; tel: +55-24-2107-3434 (Received 2nd Jul 2016; accepted 11th Oct 2016) Abstract. This study was conducted in a fragment of deciduous seasonal forest (DSF), located between the municipalities of Piratuba and Ipira, Santa Catarina. The objective was to evaluate the floristic composition and the successional stage through the ecological groups, the Shannon diversity index (H') and the dispersal syndromes of species, also using the H' and the McGinnies index (IGA) to determine the pattern of spatial distribution of species. 14 transects were installed, each with 1,000 m2, considering all trees with Diameter at Breast Hight (DBH) ≤ 4.0 cm. In total, 2,125 individuals were sampled, belonging to 113 species and 34 families. Myrtaceae and Fabaceae were the families with the highest species richness, with 14.2% and 11.5%, respectively. Euphorbiaceae and Lauraceae added approximately 25% of the individuals. The most abundant species were Actiniostemon concolor (Spreng.) Müll. -
Leguminosae No Acervo Do Herbário Da Amazônia Meridional, Alta Floresta, Mato Grosso
LEGUMINOSAE NO ACERVO DO HERBÁRIO DA AMAZÔNIA MERIDIONAL, ALTA FLORESTA, MATO GROSSO José Martins Fernandes 1, Célia Regina Araújo Soares-Lopes 2,5 , Ricardo da Silva Ribeiro 3,5 & Dennis Rodrigues da Silva 4,5 1Professor do Curso de Licenciatura e Bacharelado em Ciências Biológicas, Universidade do Estado de Mato Grosso, Campus de Alta Floresta 2Professora Adjunta VI, da Faculdade de Ciências Biológicas e Agrárias de Alta Floresta, Universidade do Estado de Mato Grosso. ([email protected]) 3Graduando em Licenciatura e Bacharelado em Ciências Biológicas, Universidade do Estado de Mato Grosso, Campus de Alta Floresta 4Licenciado em Biologia, Universidade do Estado de Mato Grosso, Campus de Cáceres 5Herbário da Amazônia Meridional – HERBAM, Centro de Biodiversidade da Amazônia Meridional - CEBIAM Recebido em: 31/03/2015 – Aprovado em: 15/05/2015 – Publicado em: 01/06/2015 RESUMO Leguminosae é considerada a terceira maior família em número de espécies no mundo e a primeira no Brasil. Destaca-se nos diferentes domínios fitogeográficos brasileiros em riqueza e uso, como na Amazônia, porém, a Amazônia meridional ainda foi pouco amostrada. Desta forma, o presente trabalho teve como objetivo apresentar uma listagem para as espécies de Leguminosae depositadas no Herbário da Amazônia Meridional - HERBAM, Alta Floresta, Mato Grosso. As identificações dos espécimes de Leguminosae depositados na coleção do HERBAM foram conferidas com base em revisões taxonômicas e imagens do New York Botanical Garden em março de 2015. Leguminosae está representada por 153 espécies distribuídas em 59 gêneros. As espécies Apuleia leiocarpa (Vogel) J.F.Macbr. e Hymenaea parvifolia Huber estão ameaçadas de extinção, na categoria Vulnerável. -
Ecological Fitting As a Determinant of the Community Structure of Platyhelminth Parasites of Anurans
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Faculty Publications from the Harold W. Manter Laboratory of Parasitology Parasitology, Harold W. Manter Laboratory of 7-2006 Ecological Fitting as a Determinant of the Community Structure of Platyhelminth Parasites of Anurans Daniel R. Brooks University of Toronto, [email protected] Virginia León-Règagnon Nacional Autónoma de México Deborah A. McLennan University of Toronto Derek Zelmer Emporia State University Follow this and additional works at: https://digitalcommons.unl.edu/parasitologyfacpubs Part of the Parasitology Commons Brooks, Daniel R.; León-Règagnon, Virginia; McLennan, Deborah A.; and Zelmer, Derek, "Ecological Fitting as a Determinant of the Community Structure of Platyhelminth Parasites of Anurans" (2006). Faculty Publications from the Harold W. Manter Laboratory of Parasitology. 269. https://digitalcommons.unl.edu/parasitologyfacpubs/269 This Article is brought to you for free and open access by the Parasitology, Harold W. Manter Laboratory of at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Faculty Publications from the Harold W. Manter Laboratory of Parasitology by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Ecology, 87(7) Supplement, 2006, pp. S76-S85 ? 2006 by the Ecological Society of America ECOLOGICAL FITTING AS A DETERMINANT OF THE COMMUNITY STRUCTURE OF PLATYHELMINTH PARASITES OF ANURANS and Daniel R. Brooks,1'5 Virginia Le?n-Regagnon,2 Deborah A. McLennan,3 Derek Zelmer4 1Department of Zoology, University of Toronto, Ontario M5S 3G5 Canada 2Laboratorio de Helmintolog?a, Instituto de Biolog?a, Universidad Nacional Aut?noma de M?xico, C. P. 04510, D. F. M?xico, M?xico of Zoology, University of Toronto, Ontario M5S 3G5 Canada * 3'Department Department of Biological Sciences, Emporia State University, Emporia, Kansas 66801 USA are Abstract. -
Understanding Host-Switching by Ecological Fitting Sabrina B
Virginia Commonwealth University VCU Scholars Compass Biology Publications Dept. of Biology 2015 Understanding Host-Switching by Ecological Fitting Sabrina B. L. Araujo Universidade Federal do Paraná Mariana Pires Braga Universidade Federal do Paraná Daniel R. Brooks Universidade Federal do Paraná See next page for additional authors Follow this and additional works at: http://scholarscompass.vcu.edu/biol_pubs Part of the Biology Commons This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The orkw is made available under the Creative Commons CC0 public domain dedication Downloaded from http://scholarscompass.vcu.edu/biol_pubs/26 This Article is brought to you for free and open access by the Dept. of Biology at VCU Scholars Compass. It has been accepted for inclusion in Biology Publications by an authorized administrator of VCU Scholars Compass. For more information, please contact [email protected]. Authors Sabrina B. L. Araujo, Mariana Pires Braga, Daniel R. Brooks, Salvatore J. Agosta, Eric P. Hoberg, Francisco W. von Hartenthal, and Walter A. Boeger This article is available at VCU Scholars Compass: http://scholarscompass.vcu.edu/biol_pubs/26 RESEARCH ARTICLE Understanding Host-Switching by Ecological Fitting Sabrina B. L. Araujo1,2, Mariana Pires Braga1, Daniel R. Brooks1, Salvatore J. Agosta3, Eric P. Hoberg4, Francisco W. von Hartenthal5, Walter A. Boeger1* 1 Laboratório de Ecologia Molecular e Parasitologia Evolutiva, Universidade Federal do Paraná, Caixa Postal 19073, Curitiba, PR 81531–980, Brazil, 2 Departamento de Física, Universidade Federal do Paraná, Caixa Postal 19044, Curitiba, PR 81531–980, Brazil, 3 Center for Environmental Studies and Department of Biology, Virginia Commonwealth University, Richmond, VA, United States of America, 4 US National Parasite Collection, US Department of Agriculture, Agricultural Research Service, BARC East No. -
Use of Floral Nectar in Heliconia Stilesii Daniels by Three Species of Hermit Hummingbirds
The Condor89~779-787 0 The Cooper OrnithologicalSociety 1987 ECOLOGICAL FITTING: USE OF FLORAL NECTAR IN HELICONIA STILESII DANIELS BY THREE SPECIES OF HERMIT HUMMINGBIRDS FRANK B. GILL The Academyof Natural Sciences,Philadelphia, PA 19103 Abstract. Three speciesof hermit hummingbirds-a specialist(Eutoxeres aquikz), a gen- eralist (Phaethornissuperciliosus), and a thief (Threnetesruckerz]-visited the nectar-rich flowers of Heliconia stilesii Daniels at a lowland study site on the Osa Peninsula of Costa Rica. Unlike H. pogonanthaCufodontis, a related Caribbean lowland specieswith a less specialized flower, H. stilesii may not realize its full reproductive potential at this site, becauseit cannot retain the services of alternative pollinators such as Phaethornis.The flowers of H. stilesii appear adapted for pollination by Eutoxeres, but this hummingbird rarely visited them at this site. Lek male Phaethornisvisited the flowers frequently in late May and early June, but then abandonedthis nectar sourcein favor of other flowers offering more accessiblenectar. The strong curvature of the perianth prevents accessby Phaethornis to the main nectar chamber; instead they obtain only small amounts of nectar that leaks anteriorly into the belly of the flower. Key words: Hummingbird; pollination; mutualism;foraging; Heliconia stilesii; nectar. INTRODUCTION Ultimately affectedare the hummingbird’s choice Species that expand their distribution following of flowers and patterns of competition among speciationenter novel ecologicalassociations un- hummingbird species for nectar (Stiles 1975, related to previous evolutionary history and face 1978; Wolf et al. 1976; Feinsinger 1978; Gill the challenges of adjustment to new settings, 1978). Use of specificHeliconia flowers as sources called “ecological fitting” (Janzen 1985a). In the of nectar by particular species of hermit hum- case of mutualistic species, such as plants and mingbirds, however, varies seasonally and geo- their pollinators, new ecological settingsmay in- graphically (Stiles 1975). -
Perfil Químico De Mudas De Inga Marginata Usadas Em Reflorestamento
JOANA SOUZA OLIVEIRA GALAVOTTI Perfil químico de mudas de Inga marginata usadas em reflorestamento Trabalho de conclusão de curso apresentado ao Instituto de Química da Universidade Estadual Paulista “Júlio de Mesquita Filho” como requisito parcial para obtenção do grau de Bacharel em Química. Orientador: Prof. Dr. Alberto José Cavalheiro Araraquara 2016 JOANA SOUZA OLIVEIRA GALAVOTTI Perfil químico de mudas de Inga marginata usadas em reflorestamento Trabalho de Conclusão de Curso apresentado ao Instituto de Química da Universidade Estadual Paulista “Júlio de Mesquita Filho”, como requisito parcial para obtenção do grau de Bacharel em Química. Orientador: Prof. Dr. Alberto José Cavalheiro Data da apresentação: 14/12/2016 BANCA EXAMINADORA Prof. Dr. Alberto José Cavalheiro (Orientador) Instituto de Química – UNESP/Araraquara Drª Juliana Rodrigues Instituto de Química – UNESP/Araraquara Prof. Dr. Humberto Márcio Santos Milagre Instituto de Química – UNESP/Araraquara Dedico este trabalho primeiramente a Deus, a Jesus e a Nossa Senhora por toda a força e por todo o amor e a Creusa Souza Oliveira por ser essa mãe que eu tanto amo e mulher que tanto admiro. Agradecimentos Agradeço primeiramente a Deus, a Jesus, a Nossa Senhora Aparecida, ao Mestre Meishu Sama e aos irmãos espirituais por toda a ajuda, o amor e a força que me deram. Em todos os momentos sei que não estive sozinha. Ao meu orientador e professor Alberto José Cavalheiro por todos os ensinamentos, a atenção e preocupação com o meu aprendizado. Meus mais sinceros agradecimentos por essa oportunidade incrível de conhecimento. À minha co-orientadora Alene Côrtes de Queiroz e Silva por toda a paciência, pelos ensinamentos e orientação que me aproximaram ainda mais desse mundo científico. -
Dimensions of Biodiversity
Dimensions of Biodiversity NATIONAL SCIENCE FOUNDATION CO-FUNDED BY 2010–2015 PROJECTS Introduction 4 Project Abstracts 2015 8 Project Updates 2014 30 Project Updates 2013 42 Project Updates 2012 56 Project Updates 2011 72 Project Updates 2010 88 FRONT COVER IMAGES A B f g h i k j C l m o n q p r D E IMAGE CREDIT THIS PAGE FRONT COVER a MBARI & d Steven Haddock f Steven Haddock k Steven Haddock o Carolyn Wessinger Peter Girguis e Carolyn g Erin Tripp l Lauren Schiebelhut p Steven Litaker b James Lendemer Wessinger h Marty Condon m Lawrence Smart q Sahand Pirbadian & c Matthew L. Lewis i Marty Condon n Verity Salmon Moh El-Naggar j Niklaus Grünwald r Marty Condon FIELD SITES Argentina France Singapore Australia French Guiana South Africa Bahamas French Polynesia Suriname Belize Germany Spain Bermuda Iceland Sweden Bolivia Japan Switzerland Brazil Madagascar Tahiti Canada Malaysia Taiwan China Mexico Thailand Colombia Norway Trinidad Costa Rica Palau United States Czech Republic Panama United Kingdom Dominican Peru Venezuela Republic Philippines Labrador Sea Ecuador Poland North Atlantic Finland Puerto Rico Ocean Russia North Pacific Ocean Saudi Arabia COLLABORATORS Argentina Finland Palau Australia France Panama Brazil Germany Peru Canada Guam Russia INTERNATIONAL PARTNERS Chile India South Africa China Brazil China Indonesia Sri Lanka (NSFC) (FAPESP) Colombia Japan Sweden Costa Rica Kenya United Denmark Malaysia Kingdom Ecuador Mexico ACKNOWLEDGMENTS Many NSF staff members, too numerous to We thank Mina Ta and Matthew Pepper for mention individually, assisted in the development their graphic design contribution to the abstract and implementation of the Dimensions of booklet. -
UNIVERSIDADE ESTADUAL DE CAMPINAS Instituto De Biologia
UNIVERSIDADE ESTADUAL DE CAMPINAS Instituto de Biologia TIAGO PEREIRA RIBEIRO DA GLORIA COMO A VARIAÇÃO NO NÚMERO CROMOSSÔMICO PODE INDICAR RELAÇÕES EVOLUTIVAS ENTRE A CAATINGA, O CERRADO E A MATA ATLÂNTICA? CAMPINAS 2020 TIAGO PEREIRA RIBEIRO DA GLORIA COMO A VARIAÇÃO NO NÚMERO CROMOSSÔMICO PODE INDICAR RELAÇÕES EVOLUTIVAS ENTRE A CAATINGA, O CERRADO E A MATA ATLÂNTICA? Dissertação apresentada ao Instituto de Biologia da Universidade Estadual de Campinas como parte dos requisitos exigidos para a obtenção do título de Mestre em Biologia Vegetal. Orientador: Prof. Dr. Fernando Roberto Martins ESTE ARQUIVO DIGITAL CORRESPONDE À VERSÃO FINAL DA DISSERTAÇÃO/TESE DEFENDIDA PELO ALUNO TIAGO PEREIRA RIBEIRO DA GLORIA E ORIENTADA PELO PROF. DR. FERNANDO ROBERTO MARTINS. CAMPINAS 2020 Ficha catalográfica Universidade Estadual de Campinas Biblioteca do Instituto de Biologia Mara Janaina de Oliveira - CRB 8/6972 Gloria, Tiago Pereira Ribeiro da, 1988- G514c GloComo a variação no número cromossômico pode indicar relações evolutivas entre a Caatinga, o Cerrado e a Mata Atlântica? / Tiago Pereira Ribeiro da Gloria. – Campinas, SP : [s.n.], 2020. GloOrientador: Fernando Roberto Martins. GloDissertação (mestrado) – Universidade Estadual de Campinas, Instituto de Biologia. Glo1. Evolução. 2. Florestas secas. 3. Florestas tropicais. 4. Poliploide. 5. Ploidia. I. Martins, Fernando Roberto, 1949-. II. Universidade Estadual de Campinas. Instituto de Biologia. III. Título. Informações para Biblioteca Digital Título em outro idioma: How can chromosome number -
Plant DNA Barcodes and a Community Phylogeny of a Tropical Forest Dynamics Plot in Panama
Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama W. John Kressa,1, David L. Ericksona, F. Andrew Jonesb,c, Nathan G. Swensond, Rolando Perezb, Oris Sanjurb, and Eldredge Berminghamb aDepartment of Botany, MRC-166, National Museum of Natural History, Smithsonian Institution, P.O. Box 37012, Washington, DC 20013-7012; bSmithsonian Tropical Research Institute, P.O. Box 0843-03092, Balboa Anco´n, Republic of Panama´; cImperial College London, Silwood Park Campus, Buckhurst Road, Ascot, Berkshire SL5 7PY, United Kingdom; and dCenter for Tropical Forest Science - Asia Program, Harvard University Herbaria, 22 Divinity Avenue, Cambridge, MA 02138 Communicated by Daniel H. Janzen, University of Pennsylvania, Philadelphia, PA, September 3, 2009 (received for review May 13, 2009) The assembly of DNA barcode libraries is particularly relevant pling: the conserved coding locus will easily align over all taxa within species-rich natural communities for which accurate species in a community sample to establish deep phylogenetic branches identifications will enable detailed ecological forensic studies. In whereas the hypervariable region of the DNA barcode will align addition, well-resolved molecular phylogenies derived from these more easily within nested subsets of closely related species and DNA barcode sequences have the potential to improve investiga- permit relationships to be inferred among the terminal branches tions of the mechanisms underlying community assembly and of the tree. functional trait evolution. To date, no studies have effectively In this respect a supermatrix design (8, 9) is ideal for using a applied DNA barcodes sensu strictu in this manner. In this report, mixture of coding genes and intergenic spacers for phylogenetic we demonstrate that a three-locus DNA barcode when applied to reconstruction across the broadest evolutionary distances, as in 296 species of woody trees, shrubs, and palms found within the the construction of community phylogenies (10). -
Redalyc.Phylogeny, Ecological Fitting and Lung Flukes
Revista Mexicana de Biodiversidad ISSN: 1870-3453 [email protected] Universidad Nacional Autónoma de México México Brooks, Daniel R.; McLennan, Deborah A.; León Régagnon, Virginia; Hoberg, Eric Phylogeny, ecological fitting and lung flukes: helping solve the problem of emerging infectious diseases Revista Mexicana de Biodiversidad, vol. 77, núm. 2, diciembre, 2006, pp. 225-233 Universidad Nacional Autónoma de México Distrito Federal, México Available in: http://www.redalyc.org/articulo.oa?id=42577209 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Revista Mexicana de Biodiversidad 77: 225-233, 2006 Phylogeny, ecological fi tting and lung fl ukes: helping solve the problem of emerging infectious diseases Filogenia, fl exibilidad ecológica y digéneos de pulmones: ayudando a resolver la crisis de las enfermedaes infecciosas emergentes Daniel R. Brooks1*, Deborah A. McLennan1, Virginia León-Règagnon2 and Eric Hoberg3 1Department of Zoology, University of Toronto, 25 Harbord Street, Toronto, ON M5S 3G5, Canada. 2Instituto de Biología, Universidad Nacional Autónoma de Mexico, Mexico D.F. Mexico 04510. 3US National Parasite Collection and Animal Parasitic Disease Laboratory, USDA, Beltsville, Maryland 20705 *Correspondent: [email protected] Abstract. Traditional wisdom, based on assumptions of species-specifi -
Chapter 1 INTRODUCTION Alvaro J. Duque M
Chapter 1 INTRODUCTION Alvaro J. Duque M. Introduction 1.1 INTRODUCTION Northwestern Amazonian forest conservation: a challenge for ecologists The actual deforestation rates in Amazonian rain forests are extremely high. The worst case scenario could lead to an almost total disappearance of the largest tropical forest mass that nowadays exists on the earth, in a relatively short time (Laurance et al. 2001). Patterns of rain forest plant diversity in northwestern (NW) Amazonia have particular importance as plant diversity in this area reaches exceptional high values per unit area (Gentry 1988a, Valencia et al. 1994, ter Steege et al. 2003). To guarantee an effective conservation planning, basic knowledge on the distribution of individual species and species assemblages is necessary. In spite of the fact that information concerning to plant communities has much increased in the last decade, most studies have focused on trees because they are the most conspicuous elements in the forests (Gentry 1988b, Duivenvoorden 1995, 1996, Pitman et al. 1999, 2001, ter Steege et al. 2000, Condit et al. 2002). However, it is well known that vascular plant diversity in tropical rain forests is also well represented by other growth forms, such as climbers, shrubs, epiphytes and herbs (Gentry and Dobson 1987, Duivenvoorden 1994, Balslev et al. 1998, Galeano et al. 1998). In addition to this lack of knowledge on non-tree growth forms, most studies have been based on different methodological approaches at individual species or community level, different sample designs, and different spatial scales, which hampers the comparisons and extrapolations among independent case studies. The Pleistocene and Miocene-Pliocene climate history has been considered as the cornerstone to understand the origin of the plant and animal biodiversity and biogeography in Amazonian rain forests (Haffer 1969, Colinvaux 1987, Van der Hammen and Absy 1994, Hooghiemstra and van der Hammen 1998).