Douglas Charles De Burgh Daly,1,4 Paul Van Antwerp Fine2 & María Cristina Martínez-Habibe3
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The Chemistry and Pharmacology of the South America Genus Protium Burm
Pharmacognosy Reviews Vol 1, Issue 1, Jan- May, 2007 PHCOG REV. An official Publication of Phcog.Net PHCOG REV.: Plant Review The Chemistry and Pharmacology of the South America genus Protium Burm. f. (Burseraceae) A. L. Rüdiger a, A. C. Siani b and V. F. Veiga Junior a,* aDepartamento de Química, Instituto de Ciências Exatas, Universidade Federal do Amazonas, Av. Rodrigo Otávio Jordão Ramos, 3000, Campus Universitário, Coroado, 69077-040, Manaus, AM, Brazil. bInstituto de Tecnologia em Fármacos, Fundação Oswaldo Cruz, R. Sizenando Nabuco, 100, 21041-250, Rio de Janeiro, RJ, Brazil Correspondence: [email protected] ABSTRACT The family Burseraceae is considered to contain about 700 species comprised in 18 genera. Their resiniferous trees and shrubs usually figures prominently in the ethnobotany of the regions where it occurs, given that such a property has led to the use of species of this family since ancient times for their aromatic properties and many medicinal applications. Although the family is distributed throughout tropical and subtropical regions of the world, the majority of the scientific available information is limited to Asiatic and African genera, such as Commiphora (myrrh), Canarium (elemi incense) and Boswellia (frankincense), or the genus Bursera (linaloe), occurring in Mexico. In the Neotropics, the Burseraceae family is largely represented by the genus Protium , which comprises about 135 species. The present review compiles the published chemical and pharmacological information on the South American genus Protium and updates important data since the last review reported in the scientific literature on Burseraceae species. KEYWORDS - Protium , Burseraceae, Pharmacology, Phytochemistry, Review. INTRODUCTION The family Burseraceae was probably originated in the Eocen Traditional uses of Protium species period, in North America. -
Volatile Monoterpene 'Fingerprints' of Resinous Protium Tree Species in The
Phytochemistry 160 (2019) 61–70 Contents lists available at ScienceDirect Phytochemistry journal homepage: www.elsevier.com/locate/phytochem Volatile monoterpene ‘fingerprints’ of resinous Protium tree species in the T Amazon rainforest ∗ Luani R.de O. Pivaa, Kolby J. Jardineb,d, , Bruno O. Gimenezb, Ricardo de Oliveira Perdizc, Valdiek S. Menezesb, Flávia M. Durganteb, Leticia O. Cobellob, Niro Higuchib, Jeffrey Q. Chambersd,e a Department of Forest Sciences, Federal University of Paraná, Curitiba, PR, Brazil b Department of Forest Management, National Institute for Amazon Research, Manaus, AM, Brazil c Department of Botany, National Institute for Amazon Research, Manaus, AM, Brazil d Climate and Ecosystem Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA e Department of Geography, University of California Berkeley, Berkeley, CA, USA ARTICLE INFO ABSTRACT Keywords: Volatile terpenoid resins represent a diverse group of plant defense chemicals involved in defense against her- Protium spp. (Burseraceae) bivory, abiotic stress, and communication. However, their composition in tropical forests remains poorly Tropical tree identification characterized. As a part of tree identification, the ‘smell’ of damaged trunks is widely used, but is highlysub- Chemotaxonomy jective. Here, we analyzed trunk volatile monoterpene emissions from 15 species of the genus Protium in the Resins central Amazon. By normalizing the abundances of 28 monoterpenes, 9 monoterpene ‘fingerprint’ patterns Volatile organic compounds emerged, characterized by a distinct dominant monoterpene. While 4 of the ‘fingerprint’ patterns were composed Hyperdominant genus Isoprenoids of multiple species, 5 were composed of a single species. Moreover, among individuals of the same species, 6 species had a single ‘fingerprint’ pattern, while 9 species had two or more ‘fingerprint’ patterns amongin- dividuals. -
An Expanded Nuclear Phylogenomic PCR Toolkit for Sapindales1
Applications in Plant Sciences 2016 4(12): 1600078 Applications in Plant Sciences PRIMER NOTE AN EXPANDED NUCLEAR PHYLOGENOMIC PCR TOOLKIT FOR SAPINDALES1 ELIZABETH S. COLLIns2,4, MORGAN R. GOSTEL3, AND ANDREA WEEKS2 2George Mason University, 4400 University Drive, MSN 3E1, Fairfax, Virginia 22030-4444 USA; and 3Department of Botany, National Museum of Natural History, Smithsonian Institution, MRC 166, P.O. Box 37012, Washington, D.C. 20013-7012 USA • Premise of the study: We tested PCR amplification of 91 low-copy nuclear gene loci in taxa from Sapindales using primers developed for Bursera simaruba (Burseraceae). • Methods and Results: Cross-amplification of these markers among 10 taxa tested was related to their phylogenetic distance from B. simaruba. On average, each Sapindalean taxon yielded product for 53 gene regions (range: 16–90). Arabidopsis thaliana (Brassicales), by contrast, yielded product for two. Single representatives of Anacardiaceae and Rutacaeae yielded 34 and 26 products, respectively. Twenty-six primer pairs worked for all Burseraceae species tested if highly divergent Aucoumea klaineana is excluded, and eight of these amplified product in every Sapindalean taxon. • Conclusions: Our study demonstrates that customized primers for Bursera can amplify product in a range of Sapindalean taxa. This collection of primer pairs, therefore, is a valuable addition to the toolkit for nuclear phylogenomic analyses of Sapindales and warrants further investigation. Key words: Anacardiaceae; Burseraceae; low-copy nuclear genes; microfluidic PCR; Rutaceae. Low-copy nuclear gene regions offer increased phyloge- PCR-based target enrichment, a method that allows simultane- netic utility for species- and population-level studies of plants ous and cost-effective amplification of multiple loci (Blow, as compared to chloroplast and nuclear ribosomal markers 2009; Uribe-Convers et al., 2016). -
Advances in the Use of DNA Barcodes to Build a Community Phylogeny for Tropical Trees in a Puerto Rican Forest Dynamics Plot
Advances in the Use of DNA Barcodes to Build a Community Phylogeny for Tropical Trees in a Puerto Rican Forest Dynamics Plot W. John Kress1*, David L. Erickson1, Nathan G. Swenson2, Jill Thompson3¤, Maria Uriarte4, Jess K. Zimmerman3 1 Department of Botany, National Museum of Natural History Smithsonian Institution, Washington, D.C., United States of America, 2 Department of Plant Biology, Michigan State University, East Lansing, Michigan, United States of America, 3 Institute for Tropical Ecosystem Studies, University of Puerto Rico, San Juan, Puerto Rico, United States of America, 4 Ecology, Evolution & Environmental Biology, Columbia University, New York, New York, United States of America Abstract Background: Species number, functional traits, and phylogenetic history all contribute to characterizing the biological diversity in plant communities. The phylogenetic component of diversity has been particularly difficult to quantify in species-rich tropical tree assemblages. The compilation of previously published (and often incomplete) data on evolutionary relationships of species into a composite phylogeny of the taxa in a forest, through such programs as Phylomatic, has proven useful in building community phylogenies although often of limited resolution. Recently, DNA barcodes have been used to construct a robust community phylogeny for nearly 300 tree species in a forest dynamics plot in Panama using a supermatrix method. In that study sequence data from three barcode loci were used to generate a well-resolved species- level phylogeny. Methodology/Principal Findings: Here we expand upon this earlier investigation and present results on the use of a phylogenetic constraint tree to generate a community phylogeny for a diverse, tropical forest dynamics plot in Puerto Rico. -
The Monophyly of Bursera and Its Impact for Divergence Times of Burseraceae
TAXON 61 (2) • April 2012: 333–343 Becerra & al. • Monophyly of Bursera The monophyly of Bursera and its impact for divergence times of Burseraceae Judith X. Becerra,1 Kogi Noge,2 Sarai Olivier1 & D. Lawrence Venable3 1 Department of Biosphere 2, University of Arizona, Tucson, Arizona 85721, U.S.A. 2 Department of Biological Production, Akita Prefectural University, Akita 010-0195, Japan 3 Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona 85721, U.S.A. Author for correspondence: Judith X. Becerra, [email protected] Abstract Bursera is one of the most diverse and abundant groups of trees and shrubs of the Mexican tropical dry forests. Its interaction with its specialist herbivores in the chrysomelid genus Blepharida, is one of the best-studied coevolutionary systems. Prior studies based on molecular phylogenies concluded that Bursera is a monophyletic genus. Recently, however, other molecular analyses have suggested that the genus might be paraphyletic, with the closely related Commiphora, nested within Bursera. If this is correct, then interpretations of coevolution results would have to be revised. Whether Bursera is or is not monophyletic also has implications for the age of Burseraceae, since previous dates were based on calibrations using Bursera fossils assuming that Bursera was paraphyletic. We performed a phylogenetic analysis of 76 species and varieties of Bursera, 51 species of Commiphora, and 13 outgroups using nuclear DNA data. We also reconstructed a phylogeny of the Burseraceae using 59 members of the family, 9 outgroups and nuclear and chloroplast sequence data. These analyses strongly confirm previous conclusions that this genus is monophyletic. -
Nuclear and Plastid DNA Sequence-Based Molecular Phylogeography of Salvadora
bioRxiv preprint doi: https://doi.org/10.1101/050518; this version posted April 27, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Nuclear and Plastid DNA Sequence-based Molecular Phylogeography of Salvadora oleoides (Salvadoraceae) in Punjab, India Felix Bast1 and Navreet Kaur2 Centre for Plant Sciences, Central University of Punjab, Bathinda, Punjab, 151001, India 1Corresponding author; Telephone: +91 98721 52694; Email: [email protected] Email: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/050518; this version posted April 27, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract Salvadora oleiodes is a tropical tree species belonging to the little-known family Salvadoraceae and distributed in the arid regions of Africa and Asia. Aims of our study were to trace the microevolutionary legacy of this tree species with the help of sequence-based multi-local phylogeography and to find the comparative placement of family Salvadoraceae within angiosperm clade malvids. A total 20 geographical isolates were collected from different regions of North India, covering a major part of its species range within the Indian Subcontinent. Sequence data from nuclear-encoded Internal Transcribed Spacer region (ITS1-5.8S-ITS2) and plastid-encoded trnL-F spacer region, were generated for this species for the first time in the world. -
The One Hundred Tree Species Prioritized for Planting in the Tropics and Subtropics As Indicated by Database Mining
The one hundred tree species prioritized for planting in the tropics and subtropics as indicated by database mining Roeland Kindt, Ian K Dawson, Jens-Peter B Lillesø, Alice Muchugi, Fabio Pedercini, James M Roshetko, Meine van Noordwijk, Lars Graudal, Ramni Jamnadass The one hundred tree species prioritized for planting in the tropics and subtropics as indicated by database mining Roeland Kindt, Ian K Dawson, Jens-Peter B Lillesø, Alice Muchugi, Fabio Pedercini, James M Roshetko, Meine van Noordwijk, Lars Graudal, Ramni Jamnadass LIMITED CIRCULATION Correct citation: Kindt R, Dawson IK, Lillesø J-PB, Muchugi A, Pedercini F, Roshetko JM, van Noordwijk M, Graudal L, Jamnadass R. 2021. The one hundred tree species prioritized for planting in the tropics and subtropics as indicated by database mining. Working Paper No. 312. World Agroforestry, Nairobi, Kenya. DOI http://dx.doi.org/10.5716/WP21001.PDF The titles of the Working Paper Series are intended to disseminate provisional results of agroforestry research and practices and to stimulate feedback from the scientific community. Other World Agroforestry publication series include Technical Manuals, Occasional Papers and the Trees for Change Series. Published by World Agroforestry (ICRAF) PO Box 30677, GPO 00100 Nairobi, Kenya Tel: +254(0)20 7224000, via USA +1 650 833 6645 Fax: +254(0)20 7224001, via USA +1 650 833 6646 Email: [email protected] Website: www.worldagroforestry.org © World Agroforestry 2021 Working Paper No. 312 The views expressed in this publication are those of the authors and not necessarily those of World Agroforestry. Articles appearing in this publication series may be quoted or reproduced without charge, provided the source is acknowledged. -
Biodiversity of Medicinal Plants at Sambas Botanical Garden, West Kalimantan, Indonesia
doi: 10.11594/jtls.08.02.04 THE JOURNAL OF TROPICAL LIFE SCIENCE OPEN ACCESS Freely available online VOL. 8, NO. 2, pp. 116 – 122, February 2018 Submitted May 2017; Revised December 2017; Accepted December 2017 Biodiversity of Medicinal Plants at Sambas Botanical Garden, West Kalimantan, Indonesia Sudarmono * Center for Plant Conservation- Bogor Botanical Garden, Indonesia Research Institute (LIPI), Bogor, Indonesia ABSTRACT Botanical garden is one of ex-situ conservation which has function as germ plasm conservation, education/research, and recreation. To conserve plants biodiversity, many local governments in Indonesia propose to cooperate with LIPI to build botanical gardens. Sambas botanical garden with an area ± 300 ha in West Kalimantan is one of a botanical garden which is under construction. As new exploration site, many biodiversity in this area has not been entirely explored yet including its medicinal plants. Methods used in this study including field survey and interview techniques. The objective of this study is to explore a biodiversity of medicinal plants in that area. This study identified 30 medicinal plants, representing 20 families and 25 genera. It indicated that Sambas botanical garden has many highly potential values of medicinal plants. Therefore, a proper management including medicinal plant for this area is strongly required. Keywords: Sambas, botanical gardens, medicinal plants INTRODUCTION Although Sambas Botanical Garden is predicted has Indonesian flora plays an important role in the great diversity on medicinal plants but information world biodiversity as contributes to 15.5% of total world about medicinal plants and uses in this area is very lack flora. However, it is under threatened due to high rate [4]. -
Comparision of Stand Structure and Tree Species Diversity Between Medium and Rich Forests of Truong Son Forestry Company, Quang Binh Province
Silviculture COMPARISION OF STAND STRUCTURE AND TREE SPECIES DIVERSITY BETWEEN MEDIUM AND RICH FORESTS OF TRUONG SON FORESTRY COMPANY, QUANG BINH PROVINCE Cao Thi Thu Hien, Nguyen Hong Hai Vietnam National University of Forestry SUMMARY Results from this study showed several characteristics of structure, composition and tree species diversity of the medium and rich forests in the tropical moist evergreen forests of the Truong Son Forestry Company, Quang Binh province. A total of 4 plots of 100m × 100m each placed in two forest states were surveyed and all stems ≥ 6 cm DBH were measured. 3661 live stems ≥ 6 cm DBH were encountered, representing 40 families and 70 tree species. The density, mean DBH, mean height and total basal area of the medium forest ranged 809 trees/ha - 839 trees/ha, 14.55 cm – 15.05 cm, 10.80 m – 11.06 m and 19.35 m2/ha – 22.42 m2/ha, while these numbers in the rich forest were 1003 trees/ha - 1010 trees/ha, 15.55 cm – 15.64 cm, 11.79 m – 12.60 m and 28.22 m2/ha – 29.00 m2/ha, respectively. These key characteristics were significant difference between two forest states. The Exponential and Weibull distributions could provide good fit for the tree diameter and height data. The most dominant families in both two forest states were Fabaceae, Burseraceae, Lauraceae and Meliaceae, and the most important species found in both two forest states were Garuga pierrei, Ormosia balansae and Litsea glutinosa. Based on the diversity profile, there is no intrinsic diversity ordering between the medium and the rich forests. -
Elatinaceae Are Sister to Malpighiaceae; Peridiscaceae Belong to Saxifragales
Elatinaceae are Sister to Malpighiaceae; Peridiscaceae Belong to Saxifragales The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Davis, Charles C., and Mark W. Chase. 2004. Elatinaceae are sister to Malpighiaceae; Peridiscaceae belong to Saxifragales. American Journal of Botany 91(2): 262-273. Published Version http://dx.doi.org/10.3732/ajb.91.2.262 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:2666728 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA American Journal of Botany 91(2): 262±273. 2004. ELATINACEAE ARE SISTER TO MALPIGHIACEAE; PERIDISCACEAE BELONG TO SAXIFRAGALES1 CHARLES C. DAVIS2,4 AND MARK W. C HASE3 2Department of Ecology and Evolutionary Biology, University of Michigan Herbarium, 3600 Varsity Drive, Ann Arbor, Michigan 48108-2287 USA; and 3Molecular Systematics Section, Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3DS UK Phylogenetic data from plastid (ndhF and rbcL) and nuclear (PHYC) genes indicate that, within the order Malpighiales, Elatinaceae are strongly supported as sister to Malpighiaceae. There are several putative morphological synapomorphies for this clade; most notably, they both have a base chromosome number of X 5 6 (or some multiple of three or six), opposite or whorled leaves with stipules, unicellular hairs (also uniseriate in some Elatinaceae), multicellular glands on the leaves, and resin (Elatinacae) or latex (Malpighiaceae). -
Daly CV -1- 2009-11 National Science Foundation, $192,932
CURRICULUM VITAE Douglas C. Daly New York Botanical Garden Bronx, NY 10458 tel.: 718-817-8660; fax: 718-817-8649; e-mail: [email protected] Education City University of New York Ph.D., Biology/Botany 1987 Harvard University B.A., Botany 1977 Scientific Appointments Director, Institute of Systematic Botany N.Y. Botanical Garden 2007- B. A. Krukoff Curator of Amazonian Botany N.Y. Botanical Garden 1987- Adjunct Professor Yale School of Forestry and Environmental Sciences 2001- Visiting Scholar New York University 1995- Adjunct Professor City University of New York 1992- Graduate Fellow N.Y. Botanical Garden 1979-86 Principal Investigator, current and recent research support (selected) 2020-22 Ford Foundation, $200,000. Traditional Communities as Central Partners in the Conservation and Sustainable Management of Amazon Forests. (PI) 2020 Leo Model Foundation, $20,000. Support for initiatives in forest management strategies for Amazonian Brazil. (PI) 2018-20 Tinker Foundation, $200,000. Equipping Community Participation in Management and Monitoring of Amazon Forests. (PI) 2015-18 Helmsley Charitable Trust, $688,208. Establishment of a Plant Conservation and Forest Resource Management Program in Myanmar. (co-PI) 2015-16 National Geographic Committee for Research and Exploration, $17,427. On the Andaki Trail: Exploration and Conservation of Colombia's Eastern Andean Piedmont. (PI) 2014-16 Helmsley Charitable Trust, $200,000. Laying the Groundwork for Plant Conservation and Capacity Building in Myanmar. (co-PI) 2013-16 Gordon and Betty Moore Foundation, $400,000. A Better Baseline: Building Capacity and Resources for Forest Inventory in the Brazilian Amazon. 2014-15 Overbrook Foundation, $50,000. Professional Woodsmen for Managed forests in Amazonian Brazil (renewal) (PI) 2013 Tinker Foundation, $78,100. -
Contrasting Patterns of Intercontinental Connectivity and Climatic Niche Evolution in “Terebinthaceae” (Anacardiaceae and Burseraceae)
ORIGINAL RESEARCH ARTICLE published: 28 November 2014 doi: 10.3389/fgene.2014.00409 To move or to evolve: contrasting patterns of intercontinental connectivity and climatic niche evolution in “Terebinthaceae” (Anacardiaceae and Burseraceae) Andrea Weeks 1*, Felipe Zapata 2, Susan K. Pell 3, Douglas C. Daly 4, John D. Mitchell 4 and Paul V. A. Fine 5 1 Department of Biology and Ted R. Bradley Herbarium, George Mason University, Fairfax, VA, USA 2 Department of Ecology and Evolutionary Biology, Brown University, Providence, RI, USA 3 United States Botanical Garden, Washington, DC, USA 4 Institute of Systematic Botany, The New York Botanical Garden, Bronx, NY, USA 5 Department of Integrative Biology and Jepson and University Herbaria, University of California, Berkeley, CA, USA Edited by: Many angiosperm families are distributed pantropically, yet for any given continent Toby Pennington, Royal Botanic little is known about which lineages are ancient residents or recent arrivals. Here Garden Edinburgh, UK we use a comprehensive sampling of the pantropical sister pair Anacardiaceae and Reviewed by: Burseraceae to assess the relative importance of continental vicariance, long-distance Matthew T. Lavin, Montana State University, USA dispersal and niche-conservatism in generating its distinctive pattern of diversity over Wolf L. Eiserhardt, Royal Botanic time. Each family has approximately the same number of species and identical stem Gardens, Kew, UK age, yet Anacardiaceae display a broader range of fruit morphologies and dispersal *Correspondence: strategies and include species that can withstand freezing temperatures, whereas Andrea Weeks, Department of Burseraceae do not. We found that nuclear and chloroplast data yielded a highly supported Biology, George Mason University, 4400 University Drive, 3E1, Fairfax, phylogenetic reconstruction that supports current taxonomic concepts and time-calibrated VA 22030, USA biogeographic reconstructions that are broadly congruent with the fossil record.