(Amphipoda) Pseudoniphargus, Formerly Usually Pseudoniphargus
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Microevolutionary Processes in the Stygobitic Genus Typhlocirolana (Isopoda Flabellifera Cirolanidae) As Inferred by Partial 12S and 16S Rdnasequences
J. Zool. Syst. Evol. Research 42 (2004) 27–32 Received on 14 January 2003 Ó 2004 Blackwell Verlag, Berlin ISSN 0947–5745 1Department of Animal Biology and Genetics ‘Leo Pardi’, University of Florence, Florence, Italy; 2Hydrobiology and Subterranean Ecology, University of Marrakech, Morocco; 3CNR-ISE, Florence, Italy Microevolutionary processes in the stygobitic genus Typhlocirolana (Isopoda Flabellifera Cirolanidae) as inferred by partial 12S and 16S rDNAsequences M. Baratti1,M.Yacoubi Khebiza2 and G. Messana3 Abstract Morocco is one of the regions of the world where many interesting discoveries have recently been made in the field of stygobiology, particularly concerning the cirolanid isopod fauna. One of the most interesting, variable and wide spread of these taxa is the perimediterranean stygobitic genus Typhlocirolana Racovitza, 1905, which has colonized the continental groundwater of Israel, Sicily, Spain, the Balearic Islands, Algeria and Morocco with several species. More populations have recently been found in Morocco, in some southern regions around Agadir, in High Atlas valleys near Marrakech and in the northeastern part of the country close to Oujda. The populations of these zones are not yet described and are the subject of this molecular analysis, together with other already designated species. To investigate the phylogenetic relationships and evolutionary history of the Typhlocirolana populations inhabiting the western Mediterranean basin, we analysed DNA sequences from the mitochondrial 12S and 16S rDNA genes. The molecular data were also used to infer the mechanisms driving the evolution of this thalassoid limnostygobitic cirolanid taxon, considered a good paleogeographic indicator because of its poor dispersion abilities. Vicariance because of paleogeographic events in the western Mediterranean basin played a prime evolutionary role in the Cirolanidae, as already suggested by morphological and ecological studies. -
A New Species of Pseudoniphargus (Crustacea, Amphipoda, Melitidae) from an Anchialine Cave on the French Mediterranean Coast
A new species of Pseudoniphargus (Crustacea, Amphipoda, Melitidae) from an anchialine cave on the French Mediterranean coast Franck BRÉHIER Alas, F-09800 Balaguères (France) [email protected] Damià JAUME Instituto Mediterráneo de Estudios Avanzados, IMEDEA (CSIC-UIB), c/ Miquel Marquès 21, E-07190 Esporles (Mallorca) (Spain) [email protected] Bréhier F. & Jaume D. 2009. — A new species of Pseudoniphargus (Crustacea, Amphipoda, Melitidae) from an anchialine cave on the French Mediterranean coast. Zoosystema 31 (1) : 17-32. ABSTRACT A new species of the stygobiont melitid amphipod genus Pseudoniphargus Chevreux, 1901 is described from an anchialine cave located on the inner shore of the Salses-Leucate coastal lagoon, on the French Mediterranean coast. Th e new species is distinguished from other members of the genus by the combined display of: 1) gnathopod II not sexually dimorphic, with short carpus; 2) outline of basis of pereopods V-VII sexually dimorphic, with both margins convex and with overhanging posterodistal lobe in male, whereas margins subparallel and posterodistal lobe present but not overhanging in female; 3) uropod I protopod KEY WORDS lacking basofacial robust seta; 4) protopod of uropod III sexually dimorphic, Crustacea, proportionaly more elongated in male; 5) exopod of male uropod III not Amphipoda, Gammaridea, strongly elongated (less than 12 times as long as wide), slightly upcurved and Melitidae, tapering; female exopod similar but shorter (about 8.8 times as long as wide); stygofauna, and 6) telson wider than long, with distal margin shallowly excavated and with France, mixohaline waters, two distal robust setae at each side. Th e relationships of this species are briefl y new species. -
Mitochondrial Genome Rearrangements at Low Taxonomic Levels: Three Distinct Mitogenome Gene Orders in the Genus Pseudoniphargus (Crustacea: Amphipoda)
Mitochondrial DNA The Journal of DNA Mapping, Sequencing, and Analysis ISSN: 1940-1736 (Print) 1940-1744 (Online) Journal homepage: http://www.tandfonline.com/loi/imdn20 Mitochondrial genome rearrangements at low taxonomic levels: three distinct mitogenome gene orders in the genus Pseudoniphargus (Crustacea: Amphipoda) Morten Stokkan, Jose A. Jurado-Rivera, Carlos Juan, Damià Jaume & Joan Pons To cite this article: Morten Stokkan, Jose A. Jurado-Rivera, Carlos Juan, Damià Jaume & Joan Pons (2015): Mitochondrial genome rearrangements at low taxonomic levels: three distinct mitogenome gene orders in the genus Pseudoniphargus (Crustacea: Amphipoda), Mitochondrial DNA, DOI: 10.3109/19401736.2015.1079821 To link to this article: http://dx.doi.org/10.3109/19401736.2015.1079821 Published online: 02 Sep 2015. Submit your article to this journal Article views: 58 View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=imdn20 Download by: [Inst Medit Estudios Avanzados] Date: 02 March 2016, At: 01:56 http://informahealthcare.com/mdn ISSN: 1940-1736 (print), 1940-1744 (electronic) Mitochondrial DNA, Early Online: 1–11 ! 2015 Taylor & Francis. DOI: 10.3109/19401736.2015.1079821 RESEARCH ARTICLE Mitochondrial genome rearrangements at low taxonomic levels: three distinct mitogenome gene orders in the genus Pseudoniphargus (Crustacea: Amphipoda) Morten Stokkan1, Jose A. Jurado-Rivera1,2, Carlos Juan1,2, Damia` Jaume1, and Joan Pons1 1Department -
Literature Survey, Bibliographic Analysis and a Taxonomic Catalogue of Subterranean Fauna from Portugal
Subterranean Biology 10: 51-60, 2012 (2013) Hypogean taxa from Portugal 51 doi: 10.3897/subtbiol.10.4025 Literature survey, bibliographic analysis and a taxonomic catalogue of subterranean fauna from Portugal Ana Sofia P. S. REBOLEIRA (1,2,*), Fernando GONÇALVES (1), Pedro OROMÍ (2) (1) Departamento de Biologia & Centro de Estudos do Ambiente e do Mar, Universidade de Aveiro, Campus Universitário de San- tiago, 3810-193 Aveiro. Portugal, e-mail: [email protected] (2) Departamento de Biología Animal, Facultad de Biología, Universidad de La Laguna. 38206 La Laguna. Tenerife. Islas Canarias, Spain * corresponding author ABSTRACT A bibliographic analysis of the hypogean biological studies in Portugal is made, compiling 138 publications related to the subter- ranean invertebrate fauna, since its begining in 1870 until November 2012. A catalogue of hypogean endemic taxa is provided, listing 27 troglobionts and 63 stygobionts, described to be obligate hypogean and endemic from mainland Portugal (Macaronesian archipelagos excluded). The first impetus on troglobiont studies was provided by the prospections of Barros Machado during 1940’s and by an expedition of Lindberg in the spring of 1961; and the major information about stygobiont species was provided by the former Instituto de Zoologia “Dr. Augusto Nobre” from Porto University. Key words: Bibliography, checklist, troglobionts, stygobionts, Portugal INTRODUCTION A literature survey allows a critical assessment of the The great momentum in the history of Portuguese state of subterranean biology, and is a crucial labor to put subterranean biology was given by António de Barros order in the knowledge of the hypogean fauna, and to Machado, an eminent arachnologist that began methodical avoid repetition of research due to the difficulties of get- exploration of caves in Portugal in the late 1930’s. -
Global Biodiversity and Phylogenetic Evaluation of Remipedia (Crustacea)
Review Global Biodiversity and Phylogenetic Evaluation of Remipedia (Crustacea) Marco T. Neiber1*, Tamara R. Hartke1, Torben Stemme2, Alexandra Bergmann3, Jes Rust3, Thomas M. Iliffe4, Stefan Koenemann5* 1 Institute for Animal Ecology and Cell Biology, University of Veterinary Medicine Hannover, Hannover, Germany, 2 Division of Cell Biology, Institute of Physiology, University of Veterinary Medicine Hannover, Hannover, Germany, 3 Department of Palaeontology, Steinmann Institute, University of Bonn, Bonn, Germany, 4 Department of Marine Biology, Texas A&M University at Galveston, Galveston, Texas, United States of America, 5 Section of Biology, Science and Technology, University of Siegen, Siegen, Germany Remipedia is one of the most recently discovered classes of body length is approximately 9 mm in small species and up to crustaceans, first described in 1981 from anchialine caves in the 45 mm in larger species. Bahamas Archipelago. The class is divided into the order All known remipedes inhabit submerged marine (anchialine) Enantiopoda, represented by two fossil species, and Nectiopoda, caves, accessible only to highly-trained cave divers. While our which contains all known extant remipedes. Since their discovery, knowledge of remipedes has increased greatly, particularly over the number of nectiopodan species has increased to 24, half of the last ten years, there are still large gaps in our understanding of which were described during the last decade. Nectiopoda exhibit a their ecology, ethology and evolutionary history. For example, disjunct global distribution pattern, with the highest abundance nothing is yet known about their mating habits. It has been and diversity in the Caribbean region, and isolated species in the speculated that fertilization must be external, as the constant Canary Islands and in Western Australia. -
Multi-Locus Phylogenetic Analysis of Amphipoda Indicates a Single Origin of the Pelagic Suborder Hyperiidea
Multi-locus phylogenetic analysis of Amphipoda indicates a single origin of the pelagic suborder Hyperiidea Supplemental Material S1.Data Curation ii S2.Multiple-Sequence Alignment iii S3.Supplemental Discussion iii S4.Taxon Selection Table v Supplemental References xvii i S1. Data Curation Updated Identifications Due to their placement in preliminary gene trees, certain sequences from Browne et al. (2007) and Hurt et al. (2013) were re-identified by examining morphological vouchers pro- vided by Dr. William Browne at the University of Miami and using the dichotomous key in Zeidler (2004). The identifications of EF989686, KC428842, KC428893, and KC428944 were changed from Hyperietta par- viceps to Hyperioides sibaginis and the identifications of EF989667, KC428897, KC428846, and KC428948 were changed from Hyperoche medusarum to Hyperia sp. Based on personal communication with Dr. William Browne, the identifications of KC428923, KC428872, KC428974, and EF989655 were changed from Streetsia porcella or Glossocephalus sp. 19 to Glossocephalus rebecae, a new species described by Zeidler and Browne (2015). Excluded Sequence A number of selected sequences were removed after preliminary analyses for reasons described below. Whenever possible, these excluded sequences were replaced by selecting another available sequence for the same taxon. An 18S sequence identified as Hyperietta sibaginis (GU358617) was excluded because this is not an ac- cepted genus and species combination and does not appear to have been one in the past. The sequence is similar to Hyperioides 18S sequences and therefore may be Hyperioides sibaginis but this identification is speculative so the sequence was excluded. An 18S sequence identified as Hyperietta stephenseni (DQ378051) may be miss-identified and was excluded. -
Phylomitogenomics of Malacostraca (Arthropoda: Crustacea)
Acta Oceanol. Sin., 2015, Vol. 34, No. 2, P. 84–92 DOI: 10.1007/s13131-015-0583-1 http://www.hyxb.org.cn E-mail: [email protected] Phylomitogenomics of Malacostraca (Arthropoda: Crustacea) SHEN Xin1, 2, 3*, TIAN Mei1, YAN Binlun1, CHU Kahou3 1 Jiangsu Key Laboratory of Marine Biotechnology/College of Marine Science, Huaihai Institute of Technology, Lianyungang 222005, China 2 Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing 100101, China 3 Simon F. S. Li Marine Science Laboratory, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China Received 25 February 2014; accepted 29 August 2014 ©The Chinese Society of Oceanography and Springer-Verlag Berlin Heidelberg 2015 Abstract Along with the sequencing technology development and continual enthusiasm of researchers on the mitochondrial genomes, the number of metazoan mitochondrial genomes reported has a tremendous growth in the past decades. Phylomitogenomics—reconstruction of phylogenetic relationships based on mitochondrial genomic data—is now possible across large animal groups. Crustaceans in the class Malacostraca display a high diversity of body forms and include large number of ecologically and commercially important species. In this study, comprehensive and systematic analyses of the phylogenetic relationships within Malacostraca were conducted based on 86 mitochondrial genomes available from GenBank. Among 86 malacostracan mitochondrial genomes, 54 species have identical major gene arrangement (excluding tRNAs) to pancrustacean ground pattern, including six species from Stomatopoda, three species from Amphipoda, two krill, seven species from Dendrobranchiata (Decapoda), and 36 species from Pleocyemata (Decapoda). However, the other 32 mitochondrial genomes reported exhibit major gene rearrangements. Phylogenies based on Bayesian analyses of nucleotide sequences of the protein-coding genes produced a robust tree with 100% posterior probability at almost all nodes. -
Cave Fauna Management Plan Coordinator
Management Plan for Bermuda’s Critically Endangered Cave Fauna Government of Bermuda Ministry of Health Seniors and Environment Department of Conservation Services Management Plan for Bermuda’s Critically Endangered Cave Fauna Prepared in Accordance with the Bermuda Protected Species Act 2003 Funded in part by: Department of Conservation Services Bermuda Zoological Society OTEP Primary Author This plan was prepared by: Annie Glasspool, Ph.D. Vice President, Bermuda Environmental Consulting Ltd. Hamilton, Bermuda Contact: Annie Glasspool, [email protected] Cover photo: Cave mictacean Mictocaris halope by Peter Parks Map prepared by Bernie Szukalski Published by Government of Bermuda Ministry of Health Seniors and Environment Department of Conservation Services “To conserve and restore Bermuda’s natural heritage” 2 CONTENTS LIST OF FIGURES AND TABLES ................................................................................ 4 DISCLAIMER .................................................................................................................... 5 ACKNOWLEDGEMENTS ............................................................................................... 6 EXECUTIVE SUMMARY ................................................................................................ 7 PART I: INTRODUCTION ............................................................................................. 10 A. Brief overview.......................................................................................................... 10 B. -
Downloaded from Brill.Com10/06/2021 03:08:27PM Via Free Access 240 Jurado-Rivera Et Al
Contributions to Zoology, 86 (3) 239-260 (2017) Molecular systematics of Haploginglymus, a genus of subterranean amphipods endemic to the Iberian Peninsula (Amphipoda: Niphargidae) José A. Jurado-Rivera1, 5, Genaro Álvarez2, José A. Caro2, 3, Carlos Juan1, 4, Joan Pons4, Damià Jaume4 1 Departament de Biologia, Universitat de les Illes Balears (UIB), Ctra. Valldemossa km 7’5, 07122-Palma de Mallorca, Spain 2 Sociedad Espeleológica Geos (Exploraciones e Investigaciones Subterráneas), C/ Dr. Miguel Ríos Sarmiento 74, 41020-Sevilla, Spain 3 Departamento de Geografía y Ciencias del Territorio, Universidad de Córdoba, Plaza del Cardenal Salazar 3, 14071-Córdoba, Spain 4 IMEDEA (CSIC-UIB), Instituto Mediterráneo de Estudios Avanzados, C/ Miquel Marquès 21, 07190-Esporles, Spain 5 E-mail: [email protected] Key words: Stygofauna, Crustacea, taxonomy, cave fauna, phylogenetic relationships Abstract References ...................................................................................... 248 Online Supplementary Information .......................................... 250 The molecular systematics of the subterranean amphipod genus Appendix ........................................................................................ 251 Haploginglymus is addressed through the phylogenetic analysis Systematics ............................................................................... 251 of three DNA gene fragments (nuclear ribosomal 28S and pro- Haploginglymus geos sp. nov. .............................................. 251 tein-coding Histone -
(Crustacea), with Emphasis on the Iberian Species
Bijdragen tot de Dierkunde, 58 (2): 159-204 — 1988 Phylogenetic relationships and biogeography of the groundwater-dwellingamphipod genus Pseudoniphargus (Crustacea), with emphasis on the Iberian species by Jos Notenboom Institute of Taxonomic Zoology, University of Amsterdam, P.O. Box 4766, 1009 AT Amsterdam, The Netherlands Abstract El grado de diferenciación morfológica de Pseudoniphar- los gus es bajo y potenciales apomorfismos disponibles son Numerical phylogenetic methods are applied in order to insuficientes resolver las relaciones a ni- para filogenéticas arrive at synapomorphic similarities between species of vel de especie. Ello puede ser atribuible a un modelo de the Character stygobiont amphipod genus Pseudoniphargus. especiación peripátrica subyacente, a problemas de discri- polarity is assessed by comparison with the relevant minación de estados de carácter mutualmente excluyentes Parapseudoniphargus and Allomelita within a outgroups , alta de evolución inde- y homólogos, y a una probabilidad cluster of interrelated of Hadzioidea. presumedly genera de Los la pendiente caracteres. problemas que plantea re- The degree of morphological differentiation of construcción filogenética de niveles taxonómicos bajos son is low and the available Pseudoniphargus potential apomor- universales. En el de el caso un grupo estigobionte, troglo- insufficient resolve phies are to phylogenetic relationships la reducción estructural la morfismo, y morfología sene- to the species level. The inconsistency in the data is high, scente provocan problemas peculiares. which be result of may a an underlying peripatric specia- Los resultados del estudio conducen al reconocimiento tion model, difficulties in discriminating mutual exclusive de monofiléticos bien de los cuatro grupos definidos, tres and homologous character states, and a high probability cuales consisten únicamente en especies hermanas. -
Comparative Mitogenomics in Hyalella (Amphipoda: Crustacea)
G C A T T A C G G C A T genes Article Comparative Mitogenomics in Hyalella (Amphipoda: Crustacea) Francesco Zapelloni 1 , José A. Jurado-Rivera 1 , Damià Jaume 2, Carlos Juan 1,2 and Joan Pons 2,* 1 Department of Biology, University of the Balearic Islands, Ctra. Valldemossa km 7,5, 07122 Palma, Spain; [email protected] (F.Z.); [email protected] (J.A.J.-R.); [email protected] (C.J.) 2 IMEDEA (CSIC-UIB), Mediterranean Institute for Advanced Studies, C/Miquel Marquès 21, 07190 Esporles, Spain; [email protected] * Correspondence: [email protected]; Tel.: +34-971-173-332 Abstract: We present the sequencing and comparative analysis of 17 mitochondrial genomes of Nearctic and Neotropical amphipods of the genus Hyalella, most from the Andean Altiplano. The mitogenomes obtained comprised the usual 37 gene-set of the metazoan mitochondrial genome showing a gene rearrangement (a reverse transposition and a reversal) between the North and South American Hyalella mitogenomes. Hyalella mitochondrial genomes show the typical AT-richness and strong nucleotide bias among codon sites and strands of pancrustaceans. Protein-coding sequences are biased towards AT-rich codons, with a preference for leucine and serine amino acids. Numerous base changes (539) were found in tRNA stems, with 103 classified as fully compensatory, 253 hemi- compensatory and the remaining base mismatches and indels. Most compensatory Watson–Crick switches were AU -> GC linked in the same haplotype, whereas most hemi-compensatory changes resulted in wobble GU and a few AC pairs. These results suggest a pairing fitness increase in tRNAs after crossing low fitness valleys.