5.1 Noke Engineering Our Soils Scott Bartlam (Manaaki Whenua)
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Size Variation and Geographical Distribution of the Luminous Earthworm Pontodrilus Litoralis (Grube, 1855) (Clitellata, Megascolecidae) in Southeast Asia and Japan
A peer-reviewed open-access journal ZooKeys 862: 23–43 (2019) Size variation and distribution of Pontodrilus litoralis 23 doi: 10.3897/zookeys.862.35727 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research Size variation and geographical distribution of the luminous earthworm Pontodrilus litoralis (Grube, 1855) (Clitellata, Megascolecidae) in Southeast Asia and Japan Teerapong Seesamut1,2,4, Parin Jirapatrasilp2, Ratmanee Chanabun3, Yuichi Oba4, Somsak Panha2 1 Biological Sciences Program, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand 2 Ani- mal Systematics Research Unit, Department of Biology, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand 3 Program in Animal Science, Faculty of Agriculture Technology, Sakon Nakhon Rajabhat University, Sakon Nakhon 47000, Thailand 4 Department of Environmental Biology, Chubu University, Kasugai 487-8501, Japan Corresponding authors: Somsak Panha ([email protected]), Yuichi Oba ([email protected]) Academic editor: Samuel James | Received 24 April 2019 | Accepted 13 June 2019 | Published 9 July 2019 http://zoobank.org/663444CA-70E2-4533-895A-BF0698461CDF Citation: Seesamut T, Jirapatrasilp P, Chanabun R, Oba Y, Panha S (2019) Size variation and geographical distribution of the luminous earthworm Pontodrilus litoralis (Grube, 1855) (Clitellata, Megascolecidae) in Southeast Asia and Japan. ZooKeys 862: 23–42. https://doi.org/10.3897/zookeys.862.35727 Abstract The luminous earthworm Pontodrilus litoralis (Grube, 1855) occurs in a very wide range of subtropical and tropical coastal areas. Morphometrics on size variation (number of segments, body length and diameter) and genetic analysis using the mitochondrial cytochrome c oxidase subunit 1 (COI) gene sequence were conducted on 14 populations of P. -
Phylogenetic and Phenetic Systematics of The
195 PHYLOGENETICAND PHENETICSYSTEMATICS OF THE OPISTHOP0ROUSOLIGOCHAETA (ANNELIDA: CLITELLATA) B.G.M. Janieson Departnent of Zoology University of Queensland Brisbane, Australia 4067 Received September20, L977 ABSTMCT: The nethods of Hennig for deducing phylogeny have been adapted for computer and a phylogran has been constructed together with a stereo- phylogran utilizing principle coordinates, for alL farnilies of opisthopor- ous oligochaetes, that is, the Oligochaeta with the exception of the Lunbriculida and Tubificina. A phenogran based on the sane attributes conpares unfavourably with the phyLogralnsin establishing an acceptable classification., Hennigrs principle that sister-groups be given equal rank has not been followed for every group to avoid elevation of the more plesionorph, basal cLades to inacceptabl.y high ranks, the 0ligochaeta being retained as a Subclass of the class Clitellata. Three orders are recognized: the LumbricuLida and Tubificida, which were not conputed and the affinities of which require further investigation, and the Haplotaxida, computed. The Order Haplotaxida corresponds preciseLy with the Suborder Opisthopora of Michaelsen or the Sectio Diplotesticulata of Yanaguchi. Four suborders of the Haplotaxida are recognized, the Haplotaxina, Alluroidina, Monil.igastrina and Lunbricina. The Haplotaxina and Monili- gastrina retain each a single superfanily and fanily. The Alluroidina contains the superfamiJ.y All"uroidoidea with the fanilies Alluroididae and Syngenodrilidae. The Lurnbricina consists of five superfaniLies. -
The Giant Palouse Earthworm (Driloleirus Americanus)
PETITION TO LIST The Giant Palouse Earthworm (Driloleirus americanus) AS A THREATENED OR ENDANGERED SPECIES UNDER THE ENDANGERED SPECIES ACT June 30, 2009 Friends of the Clearwater Center for Biological Diversity Palouse Audubon Palouse Prairie Foundation Palouse Group of the Sierra Club 1 June 30, 2009 Ken Salazar, Secretary of the Interior Robyn Thorson, Regional Director U.S. Department of the Interior U.S. Fish & Wildlife Service 1849 C Street N.W. Pacific Region Washington, DC 20240 911 NE 11th Ave Portland, Oregon Dear Secretary Salazar, Friends of the Clearwater, Center for Biological Diversity, Palouse Prairie Foundation, Palouse Audubon, Palouse Group of the Sierra Club and Steve Paulson formally petition to list the Giant Palouse Earthworm (Driloleirus americanus) as a threatened or endangered species pursuant to the Endangered Species Act (”ESA”), 16 U.S.C. §1531 et seq. This petition is filed under 5 U.S.C. 553(e) and 50 CFR 424.14 (1990), which grant interested parties the right to petition for issuance of a rule from the Secretary of Interior. Petitioners also request that critical habitat be designated for the Giant Palouse Earthworm concurrent with the listing, pursuant to 50 CFR 424.12, and pursuant to the Administrative Procedures Act (5 U.S.C. 553). The Giant Palouse Earthworm (D. americanus) is found only in the Columbia River Drainages of eastern Washington and Northern Idaho. Only four positive collections of this species have been made within the last 110 years, despite the fact that the earthworm was historically considered “very abundant” (Smith 1897). The four collections include one between Moscow, Idaho and Pullman, Washington, one near Moscow Mountain, Idaho, one at a prairie remnant called Smoot Hill and a fourth specimen near Ellensberg, Washington (Fender and McKey- Fender, 1990, James 2000, Sánchez de León and Johnson-Maynard, 2008). -
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ISSN 0375-1511 Rec. zool. Surv. India: 113(Part-4): 213-227,2013 REPORT ON THE SOIL FAUNA OF BHADRAK AND BALASORE DISTRICT, ORISSA RiNKU GoswAMi, MAYA GHOSH AND DEBDULAL SAHA Zoological Survey of India, M-Block, New Alipore, Kolkata-700053 INTRODUCTION In this study, the assessment of soil fauna in Soil is one of the basic natural resoiirces that the study areas aimed at obtaining a general supports life on Earth. It is a huge ecosystem, overview of soil fauna in the ecosystems of the which is the habitat to several living organisms. region. Perusal of published literature shows no Historically, most of the efforts on biodiversity such systematic study was conducted in these studies focused, especially on aboveground plant areas of our study zone previously. and animal species (Wardle, 2006). However, it is Soil Fauna and their Function in Soil well recognized that in most terrestrial There are many animal groups inhabiting soil ecosystems, the belowground biota supports system. It has been reported that of the total much greater diversity of organisms than does the nirmber of described species on Earth (~1,500,000), aboveground biota, because soils are the central as many as 23 per cent are soil animals (Decaens et. organising entities in terrestrial ecosystems al., 2006). Estimated nirmbers of soil species include (Coleman, and Whitman, 2005). Soil fauna is a 30,000 bacteria; 1,500,000 fungi; 60,000 algae; 10,000 highly diverse group of organisms living within protozoa; 500,000 nematodes; and 3,000 the soil and make soil alive by their activity. -
Checklist of New Zealand Earthworms Updated from Lee (1959) by R.J
Checklist of New Zealand Earthworms updated from Lee (1959) by R.J. Blakemore August, 2006 COE fellow, Soil Ecology Group, Yokohama National Univeristy, Japan. Summary This review is based on Blakemore (2004) that updated the work completed over 40 years earlier by Lee (1959) as modified by Blakemore in Lee et al. , (2000) and in Glasby et al. (2007/8) based on the information presented at the "Species 2000" meeting held Jan. 2000 at Te Papa Museum in Wellington, New Zealand. In the current checklist Acanthodrilidae, Octochaetidae and Megascolecidae sensu Blakemore (2000b) are all given separate family status. Whereas Lee (1959) listed approximately 193 species, the current list has about 199 taxa. Because many of the natives have few reports, or are based on only a few specimens, approximately 77 are listed as "threatened" or "endangered" in Dept. Conservation threatened species list (see www.doc.govt.nz/Conservation/001~Plants-and-Animals/006~Threatened-species/Terrestrial-invertebrate-(part-one).asp April, 2005) and three species are detailed in McGuinness (2001). Further studies such as those of Springett & Grey (1998) are required. Currently I seek funding to complete my database into an interactive guide to species, to use to conduct surveys in New Zealand. Some of the changes in Blakemore (2004) from Lee (1959) are: • Microscolex macquariensis (Beddard, 1896) is removed from the list because it is known only from Macquarie Island, which is now claimed as Australian territory (see Blakemore, 2000b). • Megascolides orthostichon (Schmarda, 1861) is removed from the fauna as Fletcher (1886: 524) reported that “on the authority of Captain Hutton” this species was not from New Zealand and may be from Mt Wellington in Tasmania (see Blakemore, 2000b). -
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https://doi.org/10.24199/j.mmv.1972.33.10 7 February 1972 THE AUSTRALIAN EARTHWORM GENUS SPENCER1F.LLA AND DESCRIPTION OF TWO NEW GENERA (Megascolccidae: Oligochaeta) By B. G. M. Jamieson University of Queensland Abstract A neotype is designated for a rediscovered specimen of Diporochaeta notabilis, the only known material of the type-species of SpencerieHa Miehaelsen. The genus appears to belong to a Dichogttster-Megascolides group of genera, though poor preservation precludes certain demonstration of the stomate median meronephridia diagnostic of the group. Specimens from Lord Howe Island are shown to merit recognition of a new genus and species, Paraplutellus insularis, closely allied to Heteroporodrilus Jamieson and Plutellus Perrier on the Australian mainland. The new genus Simsia is established to receive six Victorian species assignable in former classifications to Plutellus, including the new species Simsia longwarricnsis. The type- species S. tuberculoid (Fletcher) is shown to be a senior synonym of Megascolides roseus Spencer. Paraplutellus and Simsia are members of a Perionyx group of genera. Introduction segment V, meronephridia, and tubular prostate glands with unbranched lumen. This superficial The author is currently studying the Baldwin definition (which ignored morphological hetero- Spencer earthworm collection through the kind geneity in other respects) and the disjunct geo- co-operation of Dr B. J. Smith and the authori- graphical distribution, has resulted in a poly- ties of the National Museum of Victoria. Atten- phyletic genus. Revision of the genus and tion has initially been directed to resolving the elucidation of the affinities of the included heterogeneous and clearly polyphyletic assemb- species necessitates examination of the type- lages Plutellus and Diporochaeta into distinct species. -
Te Reo O Te Repo – the Voice of the Wetland Introduction 1
TE REO O TE REPO THE VOICE OF THE WETLAND CONNECTIONS, UNDERSTANDINGS AND LEARNINGS FOR THE RESTORATION EDITED BY YVONNE TAURA CHERI VAN SCHRAVENDIJK-GOODMAN OF OUR WETLANDS AND BEVERLEY CLARKSON Te reo o te repo = The voice of the wetland: connections, understandings and learnings for the restoration of our wetlands / edited by Yvonne Taura, Cheri van Schravendijk-Goodman, Beverley Clarkson. -- Hamilton, N.Z. : Manaaki Whenua – Landcare Research and Waikato Raupatu River Trust, 2017. 1 online resource ISBN 978-0-478-34799-9 (electronic) ISBN 978-0-947525-03-3 (print) I. Taura, Y., ed. II. Manaaki Whenua – Landcare Research New Zealand Ltd. III. Waikato Raupatu River Trust. Published by Manaaki Whenua – Landcare Research Private Bag 3127, Hamilton 3216, New Zealand Waikato Raupatu River Trust PO Box 481, Hamilton 3204, New Zealand This handbook was funded mainly by the Ministry of Business, Innovation and Employment (contract C09X1002).The handbook is a collaborative project between the Waikato Raupatu River Trust and Manaaki Whenua – Landcare Research. Editors: Yvonne Taura (Ngāti Hauā, Ngāti Tūwharetoa, Ngai Te Rangi, Ngāti Rangi, Ngāti Uenuku/Waikato Raupatu River Trust and Manaaki Whenua), Cheri van Schravendijk-Goodman (Te Atihaunui a Papārangi, Ngāti Apa, Ngāti Rangi), and Beverley Clarkson (Manaaki Whenua). Peer reviewers: Anne Austin (Manaaki Whenua), Kiriwai Mangan (Waikato Raupatu Lands Trust), and Monica Peters (people+science). Design and layout: Abby Davidson (NZ Landcare Trust) This work is copyright. The copying, adaptation, or issuing of this work to the public on a non-profit basis is welcomed. No other use of this work is permitted without the prior consent of the copyright holder(s). -
An Integrative Taxonomic Approach to the Identification of Three New New Zealand Endemic Earthworm Species (Acanthodrilidae, Octochaetidae: Oligochaeta)
Zootaxa 2994: 21–32 (2011) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2011 · Magnolia Press ISSN 1175-5334 (online edition) An integrative taxonomic approach to the identification of three new New Zealand endemic earthworm species (Acanthodrilidae, Octochaetidae: Oligochaeta) STEPHANE BOYER1,3, ROBERT J. BLAKEMORE2 & STEVE D. WRATTEN1 1Bio-Protection Research Centre, Lincoln University, New Zealand 2National Museum of Science and Nature in Tokyo, Japan 3Corresponding author. E-mail: [email protected] Abstract This work adds three new species to the ca. 200 currently known from New Zealand. In Acanthodrilidae is Maoridrilus felix and in Octochaetidae are Deinodrilus gorgon and Octochaetus kenleei. All three are endemics that often have restrict- ed ranges; however, little is yet known of their distribution, ecology nor conservation status. DNA barcoding was conduct- ed, which is the first time that New Zealand endemic holotypes have been so characterized. The barcoding region COI (cytochrome c oxidase subunit 1) as well as the 16S rDNA region were sequenced using tissue from the holotype specimen to provide indisputable uniqueness of the species. These DNA sequences are publically available on GenBank to allow accurate cross checking to verify the identification of other specimens or even to identify specimens on the basis of their DNA sequences alone. Based on their 16S rDNA sequences, the position of the three newly described species in the phy- logeny of New Zealand earthworms was discussed. The description of new species using this approach is encouraged, to provide a user-friendly identification tool for ecologists studying diverse endemic faunas of poorly known earthworm species. -
Phylogeny of the Megascolecidae and Crassiclitellata (Annelida
Phylogeny of the Megascolecidae and Crassiclitellata (Annelida, Oligochaeta): combined versus partitioned analysis using nuclear (28S) and mitochondrial (12S, 16S) rDNA Barrie G. M. JAMIESON Department of Zoology and Entomology, University of Queensland, Brisbane 4072, Queensland (Australia) [email protected] Simon TILLIER Annie TILLIER Département Systématique et Évolution et Service de Systématique moléculaire, Muséum national d’Histoire naturelle, 43 rue Cuvier, F-75231 Paris cedex 05 (France) Jean-Lou JUSTINE Laboratoire de Biologie parasitaire, Protistologie, Helminthologie, Département Systématique et Évolution, Muséum national d’Histoire naturelle, 61 rue Buffon, F-75321 Paris cedex 05 (France) present address: UR “Connaissance des Faunes et Flores Marines Tropicales”, Centre IRD de Nouméa, B.P. A5, 98848 Nouméa cedex (Nouvelle-Calédonie) Edmund LING Department of Zoology and Entomology, University of Queensland, Brisbane 4072, Queensland (Australia) Sam JAMES Department of Life Sciences, Maharishi University of Management, Fairfield, Iowa 52557 (USA) Keith MCDONALD Queensland Parks and Wildlife Service, PO Box 834, Atherton 4883, Queensland (Australia) Andrew F. HUGALL Department of Zoology and Entomology, University of Queensland, Brisbane 4072, Queensland (Australia) ZOOSYSTEMA • 2002 • 24 (4) © Publications Scientifiques du Muséum national d’Histoire naturelle, Paris. www.zoosystema.com 707 Jamieson B. G. M. et al. Jamieson B. G. M., Tillier S., Tillier A., Justine J.-L., Ling E., James S., McDonald K. & Hugall A. F. 2002. — Phylogeny of the Megascolecidae and Crassiclitellata (Annelida, Oligochaeta): combined versus partitioned analysis using nuclear (28S) and mitochondrial (12S, 16S) rDNA. Zoosystema 24 (4) : 707-734. ABSTRACT Analysis of megascolecoid oligochaete (earthworms and allies) nuclear 28S rDNA and mitochondrial 12S and 16S rDNA using parsimony and likeli- hood, partition support and likelihood ratio tests, indicates that all higher, suprageneric, classifications within the Megascolecidae are incompatible with the molecular data. -
External Morphological Comparison, Taxonomic Revision and Molecular Differentiation of the Four Economically Important Species of Earthworm in Thailand
INTERNATIONAL JOURNAL OF AGRICULTURE & BIOLOGY ISSN Print: 1560–8530; ISSN Online: 1814–9596 10–607/SRZ/2011/13–4–553–558 http://www.fspublishers.org Full Length Article External Morphological Comparison, Taxonomic Revision and Molecular Differentiation of the Four Economically Important Species of Earthworm in Thailand WIRIYA LOONGYAI1, PHUWADOL BANGRAK† AND SOMCHAI CHANTSAVANG Department of Animal Science, Faculty of Agriculture, Kasetsart University, Bangkok 10900 Thailand †School of Science, Walailak University, Thasala, Nakhon Si Thammarat 80160 Thailand 1Corresponding author’s e-mail: [email protected]; [email protected] ABSTRACT Four economically important species of earthworm were cultured and the external and internal characters of adult clitellate earthworms were studied. Partial sequences for ribosomal 16S rDNA and subunit one for mitochondrial cytochrome c oxidase (COI) of four earthworm species were obtained. The result of sequence analysis combined with taxonomic characters could distinguish the different species of earthworm. Morphology and nucleotide sequence of two genes for the red worm (Pheretima peguana) were distinct from Eudrilus eugeniae but were similar to the blue worm (Perionyx excavatus) and Lao worm (P. excavates) and therefore, it was classified as a new species, Perionyx sp. 1. Moreover, Eudrilus eugeniae was evidently defined as the same genus and species. Interestingly, the blue worm and Lao worm were morphologically similar to Perionyx sp. However, the molecular data of 16S rDNA could not differentiate in taxa of those two species. COI nucleotide sequence analyses showed the presence of divergent lineages between two species, suggesting the blue worm and Lao worm could be described as Perionyx sp. 2 and Perionyx sp. -
The Rise of Earthworm DNA Barcode in India
Sci Vis 18 (1), 01—10 (2018) Available at www.sciencevision.org OPEN ACCESS Research Review Oligochaete taxonomy – The rise of earthworm DNA barcode in India H. Lalthanzara1*, Ruth Lalfelpuii1, C. Zothansanga1, M. Vabeiryureilai2, N. Senthil Kumar2, G. Gurusubramanium3 1Department of Zoology, Pachhunga University College, Aizawl 796001, India 2Department of Biotechnology, 3Department of Zoology, Mizoram University, Tanhril 796004, India Oligochaeta is a class of segmented worms under the phylum Annelida that are characterised Received 01 December 2017 Accepted 14 December 2017 by the presence of tiny setae in each body segment. Earthworms are the main members, consisting of approximately 6200 species. Their ecological importance is well known as they *For correspondence : are the major soil macro-fauna; Aristotle had named them as “the intestines of soil”. Classifi- [email protected] cation of earthworms is a controversial issue since the introduction of modern taxonomical system on earthworm by Michaelsen in 1921. This is mainly because conventional identifica- tion using morphological and anatomical characters are complicated and confusing. The key diagnostic features such as the position and structure of the reproductive organs, clitellum and the associated tubercular pubertatis are not always reliable, particularly in different de- velopmental stages, especially when the available specimens are the juveniles. DNA barcod- ing has offered a potential solution, even at the levels of identifying the juveniles or cocoons. Several genes including mitochondrial cytochrome-c oxidase I, 16S, 18S and 28S ribosomal RNAs, and protein-coding histone H3 genes have been introduced in the taxonomy and phy- logeny of earthworm. It is anticipated that DNA barcoding will help conflicting taxonomy and further exploration of species diversity in India. -
Molecular Identification and Distribution of Native and Exotic
Molecular identification and distribution of native and exotic earthworms in New Zealand human-modified soils Young-Nam Kim, Nicholas Dickinson, Mike Bowie, Brett Robinson, Stéphane Boyer To cite this version: Young-Nam Kim, Nicholas Dickinson, Mike Bowie, Brett Robinson, Stéphane Boyer. Molecular iden- tification and distribution of native and exotic earthworms in New Zealand human-modified soils. New Zealand Journal of Ecology, The New Zealand Ecological Society, 2017, 41 (2), pp.218-225. 10.20417/nzjecol.41.23. hal-02303406 HAL Id: hal-02303406 https://hal.archives-ouvertes.fr/hal-02303406 Submitted on 2 Oct 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 218 New Zealand Journal of Ecology,DOI: 10.20417/nzjecol.41.23 Vol. 41, No. 2, 2017 Molecular identification and distribution of native and exotic earthworms in New Zealand human-modified soils Young-Nam Kim1, Nicholas Dickinson1, Mike Bowie1, Brett Robinson2 and Stephane Boyer1,3* 1Department of Ecology, Lincoln University, Lincoln 7647, Christchurch, New Zealand 2 Department of Soil and Physical Sciences, Lincoln University, Lincoln 7647, Christchurch, New Zealand 3Applied Molecular Solutions Research Group, Environmental and Animal Sciences, Unitec Institute of Technology, Private Bag 92025, Victoria Street West, Auckland 1142, New Zealand *Author for correspondence (Email: [email protected]) Published online: 1 March 2017 Abstract: Important knowledge gaps remain with regards to the ecology and the systematics of New Zealand’s native earthworms.