<I>Tsuga Heterophylla</I>
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175 188:Muster Z Mykol
ZEITSCHRIFT FÜR MYKOLOGIE, Band 75/2, 2009 175 Ansätze zur Erfassung der taxonomischen Struktur der Ascomycetengattung Cosmospora und ihrer Nebenfruchtformen TOM GRÄFENHAN Widmung: Dieser Artikel erscheint aus Anlass des 75. Geburtstages meines Freundes und Mentors Dr. Walter Gams, dessen vielfache Unterstützung und lehrsame Geduld ich vieles zu verdanken habe. Sein kontinuierliches Engagement für die mykologische Lehre und Wissenschaft hat Studenten wie Kollegen die Welt der Pilze auf begeisternde Weise nahegebracht. Als echter Polyglott ist er in ganz Europa zuhause und nimmt in vielen Ländern noch immer regelmäßig an mykologischen Exkursionen teil. Die gemeinnüt- zige Studienstiftung Mykologie wurde von ihm 1995 in Köln aus privaten Mitteln ge- gründet und unterstützt seitdem wissenschaftliche Arbeiten vor allem junger Biologen. GRÄFENHAN, T. (2009): Contributions to the taxonomy of the ascomycete genus Cosmospora and its anamorphs. Z. Mykol. 75/2: 175-188 Keywords: taxonomy, morphology, phylogeny, DNA barcode, host fungus, host plant, Fusarium, Nectria, anamorph-teleomorph relationships. Summary: The hypocrealean genus Cosmospora was resurrected in 1999, mainly comprising mem- bers of the former Nectria episphaeria-group. For almost a century, anamorphs of various hypho- mycete genera were linked to different species of Cosmospora. These anamorphs include members of Acremonium, Chaetopsina, Fusarium, Stilbella, Verticillium, and Volutella. Thus, Cosmospora has long been assumed to be polyphyletic, but no formal taxonomic conclusions have been drawn. With this, it becomes apparent that known and accepted Cosmospora-anamorph connections need to be reviewed critically. For example, the anamorph-teleomorph relationship of Fusarium ciliatum with different nectriaceous fungi, viz. Nectria decora and Cosmospora diminuta, is discussed in de- tail. Ecologically little is known about Cosmospora spp. -
Présentée Par : Melle BELHOUCINE Latifa Les Champignons Associés Au Platypus Cylindrus Fab. (Coleoptera, Curculionidae, Platy
République Algérienne Démocratique Et Populaire Ministère de l’Enseignement Supérieure et de La Recherche Scientifique Université Abou Bakr Belkaid Tlemcen Faculté des Sciences de la Nature et de la Vie et Sciences de la Terre et de l’Univers Département Des Sciences d’Agronomie et des Forêts Présentée par : Melle BELHOUCINE Latifa En vue de l’obtention du diplôme de Doctorat en Sciences Forestières Les champignons associés au Platypus cylindrus Fab. (Coleoptera, Curculionidae, Platypodinae) dans un jeune peuplement de chêne-liège de la forêt de M’Sila (Oran, nord-ouest d’Algérie) : Etude particulière de la biologie et l’épidémiologie de l’insecte Devant le jury composé de: Président : Pr. Letreuch- Belarouci N. Université de Tlemcen Directeur de thèse : Pr. Bouhraoua T.R. Université de Tlemcen Co- Directeur de thèse : Pr. Pujade i-Villar J. Université de Barcelone - Espagne Examinateur : Pr. Chakali G. Université INA Alger Examinateur : Pr. Bellahcene M. Université de Mostaganem Examinateur : Pr. Abdelwahid D. Université de Tlemcen Année 2012-2013 Que ce travail soit un témoignage de ma grande affection pour : - Mon très cher père ; - Ma défunte mère ; - Mes sœurs ; - Mes frères ; - Mes nièces et neveux ; - Mes belles sœurs et beaux frères ; - Mes amis. “It’s the journey that’s important, not the getting there” (John McLeod). L'écriture de cette thèse a été un voyage fascinant plein d'expériences inoubliables. La rédaction d'une thèse est un long voyage, et évidemment pas possible sans le soutien de nombreuses personnes. J'ai été vraiment privilégiée pour commencer mon voyage dans le monde de la science avec de nombreuses personnes inspirantes. -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
2012 Annual Research Report Introduction
2012 ANNUAL RESEARCH REPORT INTRODUCTION Welcome, this report marks the 44th year of continuous crop research sponsored by California processing tomato growers. This report details research funded by the contributing growers of the California Tomato Research Institute, Inc. It is our goal to provide useful timely information, geared to assisting growers in both daily production decisions and long term crop improvement. The Institute Board of Directors continues to support a broad range of projects, addressing both current problems and long range concerns. This Annual Research Report is sent to member growers and their associates. Since the Board of Directors does not wish to exclude anyone, including potential members, a limited number of copies are available to non- members by request by email to [email protected] 2012 BOARD OF DIRECTORS CALIFORNIA TOMATO RESEARCH INSTITUTE, INC. Rick Blankenship Chairman Huron Mark Cooley Vice Chair Dixon Dino Del Carlo Sect/Treasurer Stockton Bryan Barrios Zamora Darryl Bettencourt Corcoran Daniel Burns Dos Palos Frank Coelho Five Points Brett Ferguson Lemoore Scott Houlding Cantua Creek Cannon Michael Los Banos Scott Park Meridian Ray Perez Crows Landing Kent Stenderup Arvin Tony Turkovich Winters California Tomato Research Institute ~ 2012 Annual Report Page i 2012 ANNUAL RESEARCH REPORT Table of Contents Introduction i Board of Directors i Projects Funded in 2012 ii Members of the California Tomato Research Institute iv-v Top 50 California Processing Tomato Varieties in 2012 vi Research Project Reports by Category Agronomic Projects Drip Irrigated Double-Row Tomatoes on 80-inch Beds Scott Stoddard 1 Precision Tomato Production Systems for Increased Competitiveness and Resource Use Efficiency Jeff Mitchell 11 Breeding, Genetics & Variety Development Projects UCCE Statewide Processing Tomato Variety Evaluation Trials, 2012 Brenna Aegerter 17 C.M. -
Castor, Pollux and Life Histories of Fungi'
Mycologia, 89(1), 1997, pp. 1-23. ? 1997 by The New York Botanical Garden, Bronx, NY 10458-5126 Issued 3 February 1997 Castor, Pollux and life histories of fungi' Donald H. Pfister2 1982). Nonetheless we have been indulging in this Farlow Herbarium and Library and Department of ritual since the beginning when William H. Weston Organismic and Evolutionary Biology, Harvard (1933) gave the first presidential address. His topic? University, Cambridge, Massachusetts 02138 Roland Thaxter of course. I want to take the oppor- tunity to talk about the life histories of fungi and especially those we have worked out in the family Or- Abstract: The literature on teleomorph-anamorph biliaceae. As a way to focus on the concepts of life connections in the Orbiliaceae and the position of histories, I invoke a parable of sorts. the family in the Leotiales is reviewed. 18S data show The ancient story of Castor and Pollux, the Dios- that the Orbiliaceae occupies an isolated position in curi, goes something like this: They were twin sons relationship to the other members of the Leotiales of Zeus, arising from the same egg. They carried out which have so far been studied. The following form many heroic exploits. They were inseparable in life genera have been studied in cultures derived from but each developed special individual skills. Castor ascospores of Orbiliaceae: Anguillospora, Arthrobotrys, was renowned for taming and managing horses; Pol- Dactylella, Dicranidion, Helicoon, Monacrosporium, lux was a boxer. Castor was killed and went to the Trinacrium and conidial types that are referred to as being Idriella-like. -
Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two
(topsheet) Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113. Fieldiana, Botany H. Thorsten Lumbsch Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7881 fax: 312-665-7158 e-mail: [email protected] Sabine M. Huhndorf Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7855 fax: 312-665-7158 e-mail: [email protected] 1 (cover page) FIELDIANA Botany NEW SERIES NO 00 Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 H. Thorsten Lumbsch Sabine M. Huhndorf [Date] Publication 0000 PUBLISHED BY THE FIELD MUSEUM OF NATURAL HISTORY 2 Table of Contents Abstract Part One. Outline of Ascomycota - 2009 Introduction Literature Cited Index to Ascomycota Subphylum Taphrinomycotina Class Neolectomycetes Class Pneumocystidomycetes Class Schizosaccharomycetes Class Taphrinomycetes Subphylum Saccharomycotina Class Saccharomycetes Subphylum Pezizomycotina Class Arthoniomycetes Class Dothideomycetes Subclass Dothideomycetidae Subclass Pleosporomycetidae Dothideomycetes incertae sedis: orders, families, genera Class Eurotiomycetes Subclass Chaetothyriomycetidae Subclass Eurotiomycetidae Subclass Mycocaliciomycetidae Class Geoglossomycetes Class Laboulbeniomycetes Class Lecanoromycetes Subclass Acarosporomycetidae Subclass Lecanoromycetidae Subclass Ostropomycetidae 3 Lecanoromycetes incertae sedis: orders, genera Class Leotiomycetes Leotiomycetes incertae sedis: families, genera Class Lichinomycetes Class Orbiliomycetes Class Pezizomycetes Class Sordariomycetes Subclass Hypocreomycetidae Subclass Sordariomycetidae Subclass Xylariomycetidae Sordariomycetes incertae sedis: orders, families, genera Pezizomycotina incertae sedis: orders, families Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 Introduction Literature Cited 4 Abstract Part One presents the current classification that includes all accepted genera and higher taxa above the generic level in the phylum Ascomycota. -
Notizbuchartige Auswahlliste Zur Bestimmungsliteratur Für Europäische Pilzgattungen Der Discomyceten Und Hypogäischen Ascomyc
Pilzgattungen Europas - Liste 8: Notizbuchartige Auswahlliste zur Bestimmungsliteratur für Discomyceten und hypogäische Ascomyceten Bernhard Oertel INRES Universität Bonn Auf dem Hügel 6 D-53121 Bonn E-mail: [email protected] 24.06.2011 Beachte: Ascomycota mit Discomyceten-Phylogenie, aber ohne Fruchtkörperbildung, wurden von mir in die Pyrenomyceten-Datei gestellt. Erstaunlich ist die Vielzahl der Ordnungen, auf die die nicht- lichenisierten Discomyceten verteilt sind. Als Überblick soll die folgende Auflistung dieser Ordnungen dienen, wobei die Zuordnung der Arten u. Gattungen dabei noch sehr im Fluss ist, so dass mit ständigen Änderungen bei der Systematik zu rechnen ist. Es darf davon ausgegangen werden, dass die Lichenisierung bestimmter Arten in vielen Fällen unabhängig voneinander verlorengegangen ist, so dass viele Ordnungen mit üblicherweise lichenisierten Vertretern auch einige wenige sekundär entstandene, nicht-licheniserte Arten enthalten. Eine Aufzählung der zahlreichen Familien innerhalb dieser Ordnungen würde sogar den Rahmen dieser Arbeit sprengen, dafür muss auf Kirk et al. (2008) u. auf die neuste Version des Outline of Ascomycota verwiesen werden (www.fieldmuseum.org/myconet/outline.asp). Die Ordnungen der europäischen nicht-lichenisierten Discomyceten und hypogäischen Ascomyceten Wegen eines fehlenden modernen Buches zur deutschen Discomycetenflora soll hier eine Übersicht über die Ordnungen der Discomyceten mit nicht-lichenisierten Vertretern vorangestellt werden (ca. 18 europäische Ordnungen mit nicht- lichenisierten Discomyceten): Agyriales (zu Lecanorales?) Lebensweise: Zum Teil lichenisiert Arthoniales (= Opegraphales) Lebensweise: Zum Teil lichenisiert Caliciales (zu Lecanorales?) Lebensweise: Zum Teil lichenisiert Erysiphales (diese aus praktischen Gründen in der Pyrenomyceten- Datei abgehandelt) Graphidales [seit allerneuster Zeit wieder von den Ostropales getrennt gehalten; s. Wedin et al. (2005), MR 109, 159-172; Lumbsch et al. -
AR TICLE Recommendations for Competing Sexual-Asexually Typified
IMA FUNGUS · 7(1): 131–153 (2016) doi:10.5598/imafungus.2016.07.01.08 Recommendations for competing sexual-asexually typified generic names in ARTICLE Sordariomycetes (except Diaporthales, Hypocreales, and Magnaporthales) Martina Réblová1, Andrew N. Miller2, Amy Y. Rossman3*, Keith A. Seifert4, Pedro W. Crous5, David L. Hawksworth6,7,8, Mohamed A. Abdel-Wahab9, Paul F. Cannon8, Dinushani A. Daranagama10, Z. Wilhelm De Beer11, Shi-Ke Huang10, Kevin D. Hyde10, Ruvvishika Jayawardena10, Walter Jaklitsch12,13, E. B. Gareth Jones14, Yu-Ming Ju15, Caroline Judith16, Sajeewa S. N. Maharachchikumbura17, Ka-Lai Pang18, Liliane E. Petrini19, Huzefa A. Raja20, Andrea I Romero21, Carol Shearer2, Indunil C. Senanayake10, Hermann Voglmayr13, Bevan S. Weir22, and Nalin N. Wijayawarden10 1Department of Taxonomy, Institute of Botany of the Academy of Sciences of the Czech Republic, Průhonice 252 43, Czech Republic 2Illinois Natural History Survey, University of Illinois, Champaign, Illinois 61820, USA 3Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331, USA; *corresponding author e-mail: amydianer@ yahoo.com 4Ottawa Research and Development Centre, Biodiversity (Mycology and Microbiology), Agriculture and Agri-Food Canada, 960 Carling Avenue, Ottawa, Ontario K1A 0C6 Canada 5CBS-KNAW Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands 6Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense, Plaza de Ramón y Cajal s/n, Madrid 28040, Spain 7Department of Life Sciences, -
Phylogenetic Placement of Bahusandhika, Cancellidium and Pseudoepicoccum (Asexual Ascomycota)
Phytotaxa 176 (1): 068–080 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Article PHYTOTAXA Copyright © 2014 Magnolia Press ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.176.1.9 Phylogenetic placement of Bahusandhika, Cancellidium and Pseudoepicoccum (asexual Ascomycota) PRATIBHA, J.1, PRABHUGAONKAR, A.1,2, HYDE, K.D.3,4 & BHAT, D.J.1 1 Department of Botany, Goa University, Goa 403206, India 2 Nurture Earth R&D Pvt Ltd, MIT Campus, Aurangabad-431028, India; email: [email protected] 3 Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 4 School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand Abstract Most hyphomycetous conidial fungi cannot be presently placed in a natural classification. They need recollecting and sequencing so that phylogenetic analysis can resolve their taxonomic affinities. The type species of the asexual genera, Bahusandhika, Cancellidium and Pseudoepicoccum were recollected, isolated in culture, and the ITS and LSU gene regions sequenced. The sequence data were analysed with reference data obtained through GenBank. The DNA sequence analyses shows that Bahusandhika indica has a close relationship with Berkleasmium in the order Pleosporales and Pseudoepicoccum cocos with Piedraia in Capnodiales; both are members of Dothideomycetes. Cancellidium applanatum forms a distinct lineage in the Sordariomycetes. Key words: anamorphic fungi, ITS, LSU, phylogeny Introduction Asexually reproducing ascomycetous fungi are ubiquitous in nature and worldwide in distribution, occurring from the tropics to the polar regions and from mountain tops to the deep oceans. These fungi colonize, multiply and survive in diverse habitats, such as water, soil, air, litter, dung, foam, live plants and animals, as saprobes, pathogens and mutualists. -
D-Fructose Assimilation and Fermentation by Yeasts
microorganisms Article D-Fructose Assimilation and Fermentation by Yeasts Belonging to Saccharomycetes: Rediscovery of Universal Phenotypes and Elucidation of Fructophilic Behaviors in Ambrosiozyma platypodis and Cyberlindnera americana Rikiya Endoh *, Maiko Horiyama and Moriya Ohkuma Microbe Division/Japan Collection of Microorganisms, RIKEN BioResource Research Center (RIKEN BRC-JCM), 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan; [email protected] (M.H.); [email protected] (M.O.) * Correspondence: [email protected] Abstract: The purpose of this study was to investigate the ability of ascomycetous yeasts to as- similate/ferment D-fructose. This ability of the vast majority of yeasts has long been neglected since the standardization of the methodology around 1950, wherein fructose was excluded from the standard set of physiological properties for characterizing yeast species, despite the ubiquitous presence of fructose in the natural environment. In this study, we examined 388 strains of yeast, mainly belonging to the Saccharomycetes (Saccharomycotina, Ascomycota), to determine whether they can assimilate/ferment D-fructose. Conventional methods, using liquid medium containing Citation: Endoh, R.; Horiyama, M.; yeast nitrogen base +0.5% (w/v) of D-fructose solution for assimilation and yeast extract-peptone Ohkuma, M. D-Fructose Assimilation +2% (w/v) fructose solution with an inverted Durham tube for fermentation, were used. All strains and Fermentation by Yeasts examined (n = 388, 100%) assimilated D-fructose, whereas 302 (77.8%) of them fermented D-fructose. Belonging to Saccharomycetes: D D Rediscovery of Universal Phenotypes In addition, almost all strains capable of fermenting -glucose could also ferment -fructose. These and Elucidation of Fructophilic results strongly suggest that the ability to assimilate/ferment D-fructose is a universal phenotype Behaviors in Ambrosiozyma platypodis among yeasts in the Saccharomycetes. -
Characterising Plant Pathogen Communities and Their Environmental Drivers at a National Scale
Lincoln University Digital Thesis Copyright Statement The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). This thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: you will use the copy only for the purposes of research or private study you will recognise the author's right to be identified as the author of the thesis and due acknowledgement will be made to the author where appropriate you will obtain the author's permission before publishing any material from the thesis. Characterising plant pathogen communities and their environmental drivers at a national scale A thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy at Lincoln University by Andreas Makiola Lincoln University, New Zealand 2019 General abstract Plant pathogens play a critical role for global food security, conservation of natural ecosystems and future resilience and sustainability of ecosystem services in general. Thus, it is crucial to understand the large-scale processes that shape plant pathogen communities. The recent drop in DNA sequencing costs offers, for the first time, the opportunity to study multiple plant pathogens simultaneously in their naturally occurring environment effectively at large scale. In this thesis, my aims were (1) to employ next-generation sequencing (NGS) based metabarcoding for the detection and identification of plant pathogens at the ecosystem scale in New Zealand, (2) to characterise plant pathogen communities, and (3) to determine the environmental drivers of these communities. First, I investigated the suitability of NGS for the detection, identification and quantification of plant pathogens using rust fungi as a model system. -
Ecology and Systematics of South African Protea- Associated Ophiostoma Species
ECOLOGY AND SYSTEMATICS OF SOUTH AFRICAN PROTEA- ASSOCIATED OPHIOSTOMA SPECIES FRANCOIS ROETS Dissertation presented for the degree of Doctor of Philosophy at Stellenbosch University Promotors: Doctor L.L. Dreyer, Professor P.W. Crous and Professor M.J. Wingfield July 2006 DECLARATION I, the undersigned, hereby declare that the work contained in this thesis is my own original work and has not previously in its entirety or part been submitted at any university for a degree. ………………………. ………………………. F. Roets Date "Life did not take over the globe by combat, but by networking" (Margulis and Sagan 1986) SUMMARY The well-known, and often phytopathogenic, ophiostomatoid fungi are represented in South Africa by the two phylogenetically distantly related genera Ophiostoma (Ophiostomatales) and Gondwanamyces (Microascales). They are commonly associated with the fruiting structures (infructescences) of serotinous members of the African endemic plant genus Protea. The species O. splendens, O. africanum, O. protearum, G. proteae and G. capensis have been collected from various Protea spp. in South Africa where, like other ophiostomatoid fungi, they are thought to be transported by arthropod vectors. The present study set out to identify the vector organisms of Protea-associated members of mainly Ophiostoma species, using both molecular and direct isolation methods. A polymerase chain reaction (PCR) and taxon specific primers for the two Protea-associated ophiostomatoid genera were developed. Implementation of these newly developed methods revealed the presence of Ophiostoma and Gondwanamyces DNA on three insect species. They included a beetle (Genuchus hottentottus), a bug (Oxycarenus maculates) and a psocopteran species. It was, however, curious that the frequency of these insects that tested positive for ophiostomatoid DNA was very low, despite the fact that ophiostomatoid fungi are known to colonise more than 50% of Protea infructescences.