The Padul Mammoth Finds — on the Southernmost Record of Mammuthus
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Molecular and Functional Evolution of Hemoglobin in Perissodactyl
Molecular and functional evolution of hemoglobin in perissodactyl mammals (equids, tapirs, and rhinos) by Margaret Clapin A thesis submitted to the Faculty of Graduate Studies of the University of Manitoba in partial fulfillment of the requirements for the degree of Master of Science Department of Biological Sciences University of Manitoba Winnipeg, Manitoba Canada © 2019 Abstract: In this thesis, the oxygen binding characteristics of recombinant hemoglobin (Hb) isoforms (HbA [α2β2] and HbA2 [α2δ2]) from the extinct woolly rhinoceros (Coelodonta antiquitatis) are compared with Sumatran rhino (Dicerorhinus sumatrensis) and black rhino (Diceros bicornis) Hb. The major Hb component (HbA) of horses (Equus caballus) was also examined, as its blood O2 affinity has a low thermal sensitivity. This trait is commonly associated with cold-adaptation as it permits O2 to be offloaded at the cool peripheral tissues of regionally endothermic mammals, though the mechanism(s) by which the oxygenation enthalpy is reduced in horse Hb is unknown. It was hypothesized that the woolly rhino Hb isoforms would have similarly low thermal sensitivities to that of horses, either through enhanced effector binding or by altering the energetic transition from the tense to the relaxed state of hemoglobin. To test this hypothesis the hemoglobin coding sequences for each of the above species were determined and their Hb isoforms expressed using E. coli and purified. Oxygen equilibrium curves were then determined in the presence and absence of allosteric effectors at 25 and 37°C. Horse HbA had a low sensitivity to 2,3- diphosphoglycerate (DPG), though its low temperature sensitivity was primarily driven by increased DPG binding at the lower test temperature. -
Ancient Metaproteomics: a Novel Approach for Understanding Disease And
Ancient metaproteomics: a novel approach for understanding disease and diet in the archaeological record Jessica Hendy PhD University of York Archaeology August, 2015 ii Abstract Proteomics is increasingly being applied to archaeological samples following technological developments in mass spectrometry. This thesis explores how these developments may contribute to the characterisation of disease and diet in the archaeological record. This thesis has a three-fold aim; a) to evaluate the potential of shotgun proteomics as a method for characterising ancient disease, b) to develop the metaproteomic analysis of dental calculus as a tool for understanding both ancient oral health and patterns of individual food consumption and c) to apply these methodological developments to understanding individual lifeways of people enslaved during the 19th century transatlantic slave trade. This thesis demonstrates that ancient metaproteomics can be a powerful tool for identifying microorganisms in the archaeological record, characterising the functional profile of ancient proteomes and accessing individual patterns of food consumption with high taxonomic specificity. In particular, analysis of dental calculus may be an extremely valuable tool for understanding the aetiology of past oral diseases. Results of this study highlight the value of revisiting previous studies with more recent methodological approaches and demonstrate that biomolecular preservation can have a significant impact on the effectiveness of ancient proteins as an archaeological tool for this characterisation. Using the approaches developed in this study we have the opportunity to increase the visibility of past diseases and their aetiology, as well as develop a richer understanding of individual lifeways through the production of molecular life histories. iii iv List of Contents Abstract ............................................................................................................................... -
Timeline of the Evolutionary History of Life
Timeline of the evolutionary history of life This timeline of the evolutionary history of life represents the current scientific theory Life timeline Ice Ages outlining the major events during the 0 — Primates Quater nary Flowers ←Earliest apes development of life on planet Earth. In P Birds h Mammals – Plants Dinosaurs biology, evolution is any change across Karo o a n ← Andean Tetrapoda successive generations in the heritable -50 0 — e Arthropods Molluscs r ←Cambrian explosion characteristics of biological populations. o ← Cryoge nian Ediacara biota – z ← Evolutionary processes give rise to diversity o Earliest animals ←Earliest plants at every level of biological organization, i Multicellular -1000 — c from kingdoms to species, and individual life ←Sexual reproduction organisms and molecules, such as DNA and – P proteins. The similarities between all present r -1500 — o day organisms indicate the presence of a t – e common ancestor from which all known r Eukaryotes o species, living and extinct, have diverged -2000 — z o through the process of evolution. More than i Huron ian – c 99 percent of all species, amounting to over ←Oxygen crisis [1] five billion species, that ever lived on -2500 — ←Atmospheric oxygen Earth are estimated to be extinct.[2][3] Estimates on the number of Earth's current – Photosynthesis Pong ola species range from 10 million to 14 -3000 — A million,[4] of which about 1.2 million have r c been documented and over 86 percent have – h [5] e not yet been described. However, a May a -3500 — n ←Earliest oxygen 2016 -
Matheus Souza Lima Ribeiro
Palaeogeography, Palaeoclimatology, Palaeoecology 392 (2013) 546–556 Contents lists available at ScienceDirect Palaeogeography, Palaeoclimatology, Palaeoecology journal homepage: www.elsevier.com/locate/palaeo Climate and humans set the place and time of Proboscidean extinction in late Quaternary of South America Matheus Souza Lima-Ribeiro a,b,⁎, David Nogués-Bravo c,LeviCarinaTerribilea, Persaram Batra d, José Alexandre Felizola Diniz-Filho e a Departamento de Ciências Biológicas, Universidade Federal de Goiás, Campus Jataí, Cx. Postal 03, 75804-020 Jataí, GO, Brazil b Programa de Pós-graduação em Ecologia e Evolução, Universidade Federal de Goiás, Cx. Postal 131, 74001-970 Goiânia, GO, Brazil c Centre for Macroecology, Evolution and Climate, University of Copenhagen, Universitetsparken 15, 2100, Denmark d Department of Geology, Greenfield Community College, Greenfield, MA 01301, USA e Departamento de Ecologia, ICB, Universidade Federal de Goiás, Cx. Postal 131, 74001-970 Goiânia, GO, Brazil article info abstract Article history: The late Quaternary extinctions have been widely debated for a long time, but the varying magnitude of Received 18 April 2013 human vs. climate change impacts across time and space is still an unresolved question. Here we assess Received in revised form 7 October 2013 the geographic range shifts in response to climate change based on Ecological Niche Models (ENMs) and Accepted 21 October 2013 modeled the timing for extinction under human hunting scenario, and both variables were used to explain Available online 30 October 2013 the extinction dynamics of Proboscideans during a full interglacial/glacial cycle (from 126 ka to 6 ka) in South America. We found a large contraction in the geographic range size of two Proboscidean species stud- Keywords: Late Quaternary extinctions ied (Cuvieronius hyodon and Notiomastodon platensis) across time. -
Distinguishing Extant Elephants Ivory from Mammoth Ivory Using a Short
www.nature.com/scientificreports OPEN Distinguishing extant elephants ivory from mammoth ivory using a short sequence of cytochrome b gene Jacob Njaramba Ngatia1, Tian Ming Lan2,3,4, Yue Ma1,5, Thi Dao Dinh1, Zhen Wang1,5, Thomas D. Dahmer6 & Yan Chun Xu1,5,7* Trade in ivory from extant elephant species namely Asian elephant (Elephas maximus), African savanna elephant (Loxodonta africana) and African forest elephant (Loxodonta cyclotis) is regulated internationally, while the trade in ivory from extinct species of Elephantidae, including woolly mammoth, is unregulated. This distinction creates opportunity for laundering and trading elephant ivory as mammoth ivory. The existing morphological and molecular genetics methods do not reliably distinguish the source of ivory items that lack clear identifcation characteristics or for which the quality of extracted DNA cannot support amplifcation of large gene fragments. We present a PCR-sequencing method based on 116 bp target sequence of the cytochrome b gene to specifcally amplify elephantid DNA while simultaneously excluding non-elephantid species and ivory substitutes, and while avoiding contamination by human DNA. The partial Cytochrome b gene sequence enabled accurate association of ivory samples with their species of origin for all three extant elephants and from mammoth. The detection limit of the PCR system was as low as 10 copy numbers of target DNA. The amplifcation and sequencing success reached 96.7% for woolly mammoth ivory and 100% for African savanna elephant and African forest elephant ivory. This is the frst validated method for distinguishing elephant from mammoth ivory and it provides forensic support for investigation of ivory laundering cases. -
Migration: on the Move in Alaska
National Park Service U.S. Department of the Interior Alaska Park Science Alaska Region Migration: On the Move in Alaska Volume 17, Issue 1 Alaska Park Science Volume 17, Issue 1 June 2018 Editorial Board: Leigh Welling Jim Lawler Jason J. Taylor Jennifer Pederson Weinberger Guest Editor: Laura Phillips Managing Editor: Nina Chambers Contributing Editor: Stacia Backensto Design: Nina Chambers Contact Alaska Park Science at: [email protected] Alaska Park Science is the semi-annual science journal of the National Park Service Alaska Region. Each issue highlights research and scholarship important to the stewardship of Alaska’s parks. Publication in Alaska Park Science does not signify that the contents reflect the views or policies of the National Park Service, nor does mention of trade names or commercial products constitute National Park Service endorsement or recommendation. Alaska Park Science is found online at: www.nps.gov/subjects/alaskaparkscience/index.htm Table of Contents Migration: On the Move in Alaska ...............1 Future Challenges for Salmon and the Statewide Movements of Non-territorial Freshwater Ecosystems of Southeast Alaska Golden Eagles in Alaska During the A Survey of Human Migration in Alaska's .......................................................................41 Breeding Season: Information for National Parks through Time .......................5 Developing Effective Conservation Plans ..65 History, Purpose, and Status of Caribou Duck-billed Dinosaurs (Hadrosauridae), Movements in Northwest -
Preliminary Note on a Bavelian Fauna from the North Sea with Possibly Two Mammoth Species
Dick Mol 1,2, Klaas Post 1,Jelle W.F.Reumer 1,John de Vos 3 & Cees Laban 4 1 Natuurmuseum Rotterdam 2 Cerpolex, Paris 3 Naturalis, Leiden 4 NITG, Utrecht Het Gat: preliminary note on a Bavelian fauna from the North Sea with possibly two mammoth species Mol, D., Post, K., Reumer, J.W.F., De Vos, J. & Laban, C., 2003 - Het Gat: preliminary note on a Bavelian fauna from the North Sea with possibly two mammoth species - in: Reumer, J.W.F., De Vos, J. & Mol, D. (eds.) - ADVANCES IN MAMMOTH RESEARCH (Proceedings of the Second International Mammoth Conference, Rotterdam, May 16-20 1999) DEINSEA 9: 253 - 266 [ISSN 0923-9308] Published 24 May 2003 We describe the fossil vertebrate remains from a site (‘Het Gat’) on the bottom of the North Sea, between the United Kingdom and the Netherlands. The site is a maximally c. 46 m deep gully that cuts through layers of Holocene and Eemian sediments and reaches into the Yarmouth Roads Formation. This part of the Yarmouth Roads Formation is a complex of fluvial sediments of late Early-Pleistocene, most probably Bavelian, age. The age of the Bavelian is considered to be some 1.000.000 - 750.000 years (1 - 0.75 Ma). As the fossils originate from the Yarmouth Roads Formation, the fauna is thus attributed a late Early Pleistocene age; we correlate it to localities such as Untermassfeld (Germany) and Saint-Prest (France), which both have an estimated age of c. 1 Ma. The faunal content of the site ‘Het Gat’ is provisionally as follows: (Proboscidea) Mammuthus meridionalis and/or Mammuthus trogontherii; (Artiodactyla) Hippopotamus antiquus, Alces lati- frons, Megaloceros dawkinsi, Megaloceros savini, Eucladoceros ctenoides, Bison menneri; (Perissodactyla) Equus major, Stephanorhinus etruscus; (Carnivora) Homotherium cf. -
Investigating Sexual Dimorphism in Ceratopsid Horncores
University of Calgary PRISM: University of Calgary's Digital Repository Graduate Studies The Vault: Electronic Theses and Dissertations 2013-01-25 Investigating Sexual Dimorphism in Ceratopsid Horncores Borkovic, Benjamin Borkovic, B. (2013). Investigating Sexual Dimorphism in Ceratopsid Horncores (Unpublished master's thesis). University of Calgary, Calgary, AB. doi:10.11575/PRISM/26635 http://hdl.handle.net/11023/498 master thesis University of Calgary graduate students retain copyright ownership and moral rights for their thesis. You may use this material in any way that is permitted by the Copyright Act or through licensing that has been assigned to the document. For uses that are not allowable under copyright legislation or licensing, you are required to seek permission. Downloaded from PRISM: https://prism.ucalgary.ca UNIVERSITY OF CALGARY Investigating Sexual Dimorphism in Ceratopsid Horncores by Benjamin Borkovic A THESIS SUBMITTED TO THE FACULTY OF GRADUATE STUDIES IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE DEPARTMENT OF BIOLOGICAL SCIENCES CALGARY, ALBERTA JANUARY, 2013 © Benjamin Borkovic 2013 Abstract Evidence for sexual dimorphism was investigated in the horncores of two ceratopsid dinosaurs, Triceratops and Centrosaurus apertus. A review of studies of sexual dimorphism in the vertebrate fossil record revealed methods that were selected for use in ceratopsids. Mountain goats, bison, and pronghorn were selected as exemplar taxa for a proof of principle study that tested the selected methods, and informed and guided the investigation of sexual dimorphism in dinosaurs. Skulls of these exemplar taxa were measured in museum collections, and methods of analysing morphological variation were tested for their ability to demonstrate sexual dimorphism in their horns and horncores. -
Elephas Antiquus in Greece: New finds and a Reappraisal of Older Material (Mammalia, Proboscidea, Elephantidae)
Quaternary International xxx (2010) 1e11 Contents lists available at ScienceDirect Quaternary International journal homepage: www.elsevier.com/locate/quaint Elephas antiquus in Greece: New finds and a reappraisal of older material (Mammalia, Proboscidea, Elephantidae) Evangelia Tsoukala a,*, Dick Mol b, Spyridoula Pappa a, Evangelos Vlachos a, Wilrie van Logchem c, Markos Vaxevanopoulos d, Jelle Reumer e a Aristotle University, School of Geology, University campus, 54 124 Thessaloniki, Macedonia, Greece b Natural History Museum Rotterdam and Mammuthus Club International, Gudumholm 41, 2133 HG Hoofddorp, The Netherlands c Mammuthus Club International, Bosuilstraat 12, 4105 WE Culemborg, The Netherlands d Ministry of Culture, Ephorate of Palaeoanthropology-Speleology of Northern Greece, Navarinou 28, 55131, Thessaloniki, Greece e Faculty of Geosciences, Utrecht University and Natural History Museum Rotterdam, PO Box 23452, 3001 KL Rotterdam, The Netherlands article info abstract Article history: This paper briefly describes some recently discovered remains of the straight-tusked elephant, Elephas Available online xxx antiquus, from Greece. Material of this extinct proboscidean was found in four localities in Northern Greece: Kaloneri and Sotiras in Western Macedonia, Xerias in Eastern Macedonia, and Larissa in Thessaly. In addition, published elephant remains from Ambelia, Petres and Perdikas, also from Northern Greece, are reinterpreted and also attributed to E. antiquus. Of all these, the Kaloneri elephant shows an inter- esting paleopathology: it was disabled by a broken right tusk. Ó 2010 Elsevier Ltd and INQUA. All rights reserved. 1. Introduction of E. namadicus comes from India. Maglio (1973) considered the Asiatic form E. namadicus to be a senior synonym of the European Fossil Proboscidea are known from Neogene and Quaternary form E. -
Straight-Tusked Elephant (Palaeoloxodon Antiquus) and Other Megafauna in Europe
The World of Elephants - International Congress, Rome 2001 The Late Quaternary extinction of woolly mammoth (Mammuthus primigenius), straight-tusked elephant (Palaeoloxodon antiquus) and other megafauna in Europe A.J. Stuart, A.M. Lister Department of Biology, University College, London, UK [email protected] We are engaged in a research project (funded at present, it is apparent that these range changes by the Natural Environment Research Council - were not the same for each species; for example NERC) on megafaunal extinctions throughout the “last stands” of Mammuthus primigenius, Europe within the period ca. 50,000 to 9000 14C Megaloceros giganteus and Palaeoloxodon years BP. The work involves a survey of strati- antiquus appear to have been made in very dif- graphic information and available 14C dates, and ferent regions of Europe. Tracking these changes also sampling crucial material for a major involves firstly gathering data from the literature programme of AMS 14C dating. Both of the and from colleagues in each region. By these elephant species present in the European Late means we are building up an approximate pic- Pleistocene: Mammuthus primigenius and ture and specifying the likely latest material of Palaeoloxodon antiquus are included in the our target species for each region. In order to project. obtain a much more accurate database, we are Our target species include most of those that sampling the putatively latest material and sub- became extinct, or regionally extinct, after mitting it for 14C dating. ca. 15,000 BP: woolly mammoth Mammuthus Late Quaternary extinctions have been vari- primigenius, woolly rhinoceros Coelodonta ously attributed to overkill by human hunters antiquitatis; giant deer Megaloceros giganteus; (Martin 1984; Martin & Steadman 1999), to lion Panthera leo; and spotted hyaena Crocuta environmental changes (Graham & Lundelius crocuta. -
The Woolly Mammoth
The Woolly Mammoth The Woolly Mammoth by Edward I. Maxwell The closest relative of the woolly mammoth is the Asian elephant. The main difference between the two is that the mammoth had an incredible coat of fur, made up of an outer layer of coarse "guard hair" with an inner layer of curly wool. The last known group of mammoths died off, or became extinct, around 4,000 years ago. The mammoth roamed the northern lands of the world during a period known as the Ice Age. It was among the largest land mammals to roam the earth. The mammoth was a tough beast and was able to endure extreme weather conditions and frigid temperatures. The mammoth shared these northern territories with other mammals during the Ice Age. The most important mammal to interact with the mammoth, however, was the human. When the mammoths were at their greatest numbers, humans mainly hunted animals and foraged for food. These hunters would follow herds of animals over incredibly long distances in order to hunt them. The woolly mammoth provided a great amount of food and other important things for these humans. The fur, for example, could be used to make coats and blankets that would help keep out the cold in the icy environment. Bones from the mammoth could be used to make tools and weapons. Because one mammoth provided so many useful things to a large group of people, early humans would follow the herds wherever they went. There is even a theory that the humans followed the mammoth over a land-bridge from Asia into the Americas. -
Manus Descriptions of an Undescribed Mastodon from the Latest Miocene-Earliest Pliocene Gray Fossil Site, with Comparisons to Other North American Proboscidean Taxa
East Tennessee State University Digital Commons @ East Tennessee State University Electronic Theses and Dissertations Student Works 12-2019 Manus Descriptions of an Undescribed Mastodon from the Latest Miocene-Earliest Pliocene Gray Fossil Site, with Comparisons to other North American Proboscidean Taxa Brenna Hart-Farrar East Tennessee State University Follow this and additional works at: https://dc.etsu.edu/etd Part of the Geology Commons, and the Paleobiology Commons Recommended Citation Hart-Farrar, Brenna, "Manus Descriptions of an Undescribed Mastodon from the Latest Miocene-Earliest Pliocene Gray Fossil Site, with Comparisons to other North American Proboscidean Taxa" (2019). Electronic Theses and Dissertations. Paper 3680. https://dc.etsu.edu/etd/3680 This Thesis - unrestricted is brought to you for free and open access by the Student Works at Digital Commons @ East Tennessee State University. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of Digital Commons @ East Tennessee State University. For more information, please contact [email protected]. Manus Descriptions of an Undescribed Mastodon from the Latest Miocene-Earliest Pliocene Gray Fossil Site, with Comparisons to other North American Proboscidean Taxa _________________________________ A thesis presented to the faculty of the Department of Geosciences East Tennessee State University In partial fulfillment of the requirements for the degree Master of Science in Geosciences _________________________________ by Brenna J. Hart-Farrar December 2019 _________________________________ Steven C. Wallace, Chair Chris. Widga Blaine W. Schubert Keywords: Gray Fossil Site, Mammut, Mastodon, Morphology, Manus ABSTRACT Manus descriptions of an Undescribed Mastodon from the Latest Miocene-Earliest Pliocene Gray Fossil Site, with Comparisons to other North American Proboscidean Taxa by Brenna J.