Extreme Organisms on Earth Show Us Just How Weird Life Elsewhere Could Be. by Chris Impey Astrobiology
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Where Less May Be More: How the Rare Biosphere Pulls Ecosystems Strings
The ISME Journal (2017) 11, 853–862 OPEN © 2017 International Society for Microbial Ecology All rights reserved 1751-7362/17 www.nature.com/ismej MINI REVIEW Where less may be more: how the rare biosphere pulls ecosystems strings Alexandre Jousset1, Christina Bienhold2,3, Antonis Chatzinotas4,5, Laure Gallien6,7, Angélique Gobet8, Viola Kurm9, Kirsten Küsel10,5, Matthias C Rillig11,12, Damian W Rivett13, Joana F Salles14, Marcel GA van der Heijden15,16,17, Noha H Youssef18, Xiaowei Zhang19, Zhong Wei20 and WH Gera Hol9 1Utrecht University, Department of Biology, Institute of Environmental Biology, Ecology and Biodiversity Group, Utrecht, The Netherlands; 2Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Bremerhaven, Germany; 3Max Planck Institute for Marine Microbiology, Bremen, Germany; 4Helmholtz Centre for Environmental Research – UFZ, Leipzig, Germany; 5German Centre for Integrative Biodiversity Research (iDiv), Halle-Jena-Leipzig, Leipzig, Germany; 6Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland; 7Center for Invasion Biology, Department of Botany & Zoology, Stellenbosch University, Matieland, South Africa; 8Sorbonne Universités, UPMC Université Paris 06, CNRS, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, F-29688, Roscoff Cedex, France; 9Netherlands Institute of Ecology, Department of Terrestrial Ecology, Wageningen, The Netherlands; 10Friedrich Schiller University Jena, Institute of Ecology, Jena, Germany; 11Freie Universtät Berlin, -
Experimental and Statistical Analysis of Nutritional Requirements for the Growth of the Extremophile Deinococcus Geothermalis DSM 11300
Experimental and statistical analysis of nutritional requirements for the growth of the extremophile Deinococcus geothermalis DSM 11300 Julie Bornot, Cesar Arturo Aceves-Lara, Carole Molina-Jouve, Jean-Louis Uribelarrea, Nathalie Gorret To cite this version: Julie Bornot, Cesar Arturo Aceves-Lara, Carole Molina-Jouve, Jean-Louis Uribelarrea, Nathalie Gor- ret. Experimental and statistical analysis of nutritional requirements for the growth of the ex- tremophile Deinococcus geothermalis DSM 11300. Extremophiles, Springer Verlag, 2014, 18 (6), pp.1009-1021. 10.1007/s00792-014-0671-8. hal-01268947 HAL Id: hal-01268947 https://hal.archives-ouvertes.fr/hal-01268947 Submitted on 11 Mar 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. OATAO is an open access repository that collects the work of Toulouse researchers and makes it freely available over the web where possible This is an author’s version published in: http://oatao.univ-toulouse.fr/22999 Official URL: https://doi.org/10.1007/s00792-014-0671-8 To cite this version: Bornot, Julie and Aceves-Lara, César-Arturo and Molina-Jouve, Carole and Uribelarrea, Jean-Louis and Gorret, Nathalie Experimental and statistical analysis of nutritional requirements for the growth of the extremophile Deinococcus geothermalis DSM 11300. -
Science and Innovation: the Under-Fueled Engine of Prosperity
Science and Innovation: The Under-Fueled Engine of Prosperity JULY 14, 2021 AUTHOR Benjamin F. Jones* ABSTRACT Science and innovation are central to human progress and national economic success. Currently, the United States invests 2.8% of GDP in research and development, which is supported by a range of public policies. This paper asks whether the United States invests enough. To answer that question, the conceptual case for government intervention and skepticism about that case are reviewed. The paper then turns to systematic evidence, including the very latest evidence, regarding the operation of the science and innovation system and its social returns. This evidence suggests a clear answer: We massively underinvest in science and innovation, with implications for our standards of living, health, national competitiveness, and capacity to respond to crisis. * Kellogg School of Management and National Bureau of Economic Research. Email: [email protected]. 1. Introduction Scientific and technological advances have long been recognized as engines of economic growth and rising prosperity. The fruits of these advances—instantaneous global communications, vaccines, airplanes, heart surgery, computers, skyscrapers, industrial robots, on-demand entertainment, to name a few—might seem almost magical to our ancestors from not-too-many generations ago. The power of this progress has been broadly evident since the Industrial Revolution and was recognized at the time, including by political leaders. As the British Prime Minister Benjamin Disraeli noted in 1873, “How much has happened in these fifty years … I am thinking of those revolutions of science which … have changed the position and prospects of mankind more than all the conquests and all the codes and all the legislators that ever lived.” Disraeli was talking of things like the steam engine, the telegraph, and textile manufacturing. -
Arxiv.Org | Cornell University Library, July, 2019. 1
arXiv.org | Cornell University Library, July, 2019. Extremophiles: a special or general case in the search for extra-terrestrial life? Ian von Hegner Aarhus University Abstract Since time immemorial life has been viewed as fragile, yet over the past few decades it has been found that many extreme environments are inhabited by organisms known as extremophiles. Knowledge of their emergence, adaptability, and limitations seems to provide a guideline for the search of extra-terrestrial life, since some extremophiles presumably can survive in extreme environments such as Mars, Europa, and Enceladus. Due to physico-chemical constraints, the first life necessarily came into existence at the lower limit of it‟s conceivable complexity. Thus, the first life could not have been an extremophile, furthermore, since biological evolution occurs over time, then the dual knowledge regarding what specific extremophiles are capable of, and to the analogue environment on extreme worlds, will not be sufficient as a search criterion. This is because, even though an extremophile can live in an extreme environment here-and-now, its ancestor however could not live in that very same environment in the past, which means that no contemporary extremophiles exist in that environment. Furthermore, a theoretical framework should be able to predict whether extremophiles can be considered a special or general case in the galaxy. Thus, a question is raised: does Earth‟s continuous habitability represent an extreme or average value for planets? Thus, dependent on whether it is difficult or easy for worlds to maintain the habitability, the search for extra- terrestrial life with a focus on extremophiles will either represent a search for dying worlds, or a search for special life on living worlds, focusing too narrowly on extreme values. -
Extremely Thermophilic Microorganisms As Metabolic Engineering Platforms for Production of Fuels and Industrial Chemicals
REVIEW published: 05 November 2015 doi: 10.3389/fmicb.2015.01209 Extremely thermophilic microorganisms as metabolic engineering platforms for production of fuels and industrial chemicals Benjamin M. Zeldes 1, Matthew W. Keller 2, Andrew J. Loder 1, Christopher T. Straub 1, Michael W. W. Adams 2 and Robert M. Kelly 1* 1 Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC, USA, 2 Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA Enzymes from extremely thermophilic microorganisms have been of technological interest for some time because of their ability to catalyze reactions of industrial significance at elevated temperatures. Thermophilic enzymes are now routinely produced in recombinant mesophilic hosts for use as discrete biocatalysts. Genome and metagenome sequence data for extreme thermophiles provide useful information for putative biocatalysts for a wide range of biotransformations, albeit involving at most a few enzymatic steps. However, in the past several years, unprecedented progress has been made in establishing molecular genetics tools for extreme thermophiles to the point Edited by: that the use of these microorganisms as metabolic engineering platforms has become Bettina Siebers, University of Duisburg-Essen, possible. While in its early days, complex metabolic pathways have been altered or Germany engineered into recombinant extreme thermophiles, such that the production of fuels and Reviewed by: chemicals at elevated temperatures has become possible. Not only does this expand the Haruyuki Atomi, thermal range for industrial biotechnology, it also potentially provides biodiverse options Kyoto University, Japan Phillip Craig Wright, for specific biotransformations unique to these microorganisms. The list of extreme University of Sheffield, UK thermophiles growing optimally between 70 and 100◦C with genetic toolkits currently *Correspondence: available includes archaea and bacteria, aerobes and anaerobes, coming from genera Robert M. -
Marine Extremophiles: a Source of Hydrolases for Biotechnological Applications
Mar. Drugs 2015, 13, 1925-1965; doi:10.3390/md13041925 OPEN ACCESS marine drugs ISSN 1660-3397 www.mdpi.com/journal/marinedrugs Article Marine Extremophiles: A Source of Hydrolases for Biotechnological Applications Gabriel Zamith Leal Dalmaso 1,2, Davis Ferreira 3 and Alane Beatriz Vermelho 1,* 1 BIOINOVAR—Biotechnology laboratories: Biocatalysis, Bioproducts and Bioenergy, Institute of Microbiology Paulo de Góes, Federal University of Rio de Janeiro, Av. Carlos Chagas Filho, 373, 21941-902 Rio de Janeiro, Brazil; E-Mail: [email protected] 2 Graduate Program in Plant Biotechnology, Health and Science Centre, Federal University of Rio de Janeiro, Av. Carlos Chagas Filho, 373, 21941-902 Rio de Janeiro, Brazil 3 BIOINOVAR—Biotechnology Laboratories: Virus-Cell Interaction, Institute of Microbiology Paulo de Góes, Federal University of Rio de Janeiro, Av. Carlos Chagas Filho, 373, 21941-902 Rio de Janeiro, Brazil; E-Mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +55-(21)-3936-6743; Fax: +55-(21)-2560-8344. Academic Editor: Kirk Gustafson Received: 1 December 2014 / Accepted: 25 March 2015 / Published: 3 April 2015 Abstract: The marine environment covers almost three quarters of the planet and is where evolution took its first steps. Extremophile microorganisms are found in several extreme marine environments, such as hydrothermal vents, hot springs, salty lakes and deep-sea floors. The ability of these microorganisms to support extremes of temperature, salinity and pressure demonstrates their great potential for biotechnological processes. Hydrolases including amylases, cellulases, peptidases and lipases from hyperthermophiles, psychrophiles, halophiles and piezophiles have been investigated for these reasons. -
The Resolved Mystery of Tardigrades
Journal of Investigative Genomics Mini review Open Access The resolved mystery of tardigrades Abstract Volume 4 Issue 2 - 2017 Tardigrades, also known as ‘Water bears’ or ‘Space Bears’ are famous for their ability to survive in extreme environmental conditions. With incredible ability to survive at a range Oisorjo Chakraborty, Pranab Roy Department of Biotechnology, Haldia Institute of Technology, of temperature between -272˚C to 150˚C, these small eight legged animals are considered India as one of the toughest organisms of the world. There are several records of survival of these animals under high pressure, UV exposure and even in space under cosmic radiation. For Correspondence: Pranab Roy, Department of Biotechnology, decades it remained a mystery how tardigrades can tolerate the extreme environmental Haldia Institute of Technology, India, Tel 9933037099, conditions. Afteryears of research, it was found that tardigrades dry out and turn their entire Email [email protected] body into a glass like structure at very low temperature, termed as “Bio-glass” to shut Oisorjo Chakraborty, Department of Biotechnology, Haldia down all their metabolic processes. Later by rehydrating, the creatures bring back life in Institute of Technology, India, Email [email protected] them. Finally researchers have identified the key protein in tardigrades which helps them to survive at extreme low temperature. The genome of several tardigrades species has been Received: April 21, 2017 | Published: May 19, 2017 sequenced like ‘Ramazzottius varieornatus’, ‘Hypsibius dujardini’. The sequenced genome provides evidences of expression of tolerance related genes and horizontal gene transfer in the animals helping them to survive in extreme environmental conditions with these key genes. -
Astr 450 Assignment 5: Earth-Based Life in Extreme Environments Due Thu Feb 19, 2009
Astr 450 Assignment 5: Earth-based life in extreme environments due Thu Feb 19, 2009 An ”extremophile” is an organism that thrives in extreme environments, where ”extreme” means different from the Earth surface norms in temperature, pressure, or composition. ”Thrive” in this context means that these conditions are ideal for the organism, and in fact, most extremophiles would perish if brought to Earth-normal conditions. For each of the following categories of extremophile, identify (i) the extreme condition with numerical values, and (ii) at least one location on Earth where these extreme conditions are realized, and (iii) if in your researches you come across a type of organism that does not ultimately rely upon the Sun as its source of energy, then please make a note if it. 1. Acidophile 2. Alkalophile 3. Thermophile 4. Psychrophile 5. Piezophile (also called a barophile) 6. Lithophile (also called an endolith) 7. Halophile You must include a bibliographic entry for all sources you use. You can organize this information in chart form if you wish, but it is certainly not required. Finally, quickly skim the wikipedia article on the bacterium named “deinococcus radiodurans” and tell me the (surprising) extreme condition it can tolerate which is NOT on the list above. Ref: http://en.wikipedia.org/wiki/Deinococcus radiodurans Requirements for a good assignment • The assignment will be graded strictly, as expected for a 400-level course. The assignment is graded out of 30 points. • Have your name, SID, and a word count at the top of the paper. Use question-and-answer format when writing your assignment, do NOT hand in a run-on paragraph (50% penalty). -
The Thermal Limits to Life on Earth
International Journal of Astrobiology 13 (2): 141–154 (2014) doi:10.1017/S1473550413000438 © Cambridge University Press 2014. The online version of this article is published within an Open Access environment subject to the conditions of the Creative Commons Attribution licence http://creativecommons.org/licenses/by/3.0/. The thermal limits to life on Earth Andrew Clarke1,2 1British Antarctic Survey, Cambridge, UK 2School of Environmental Sciences, University of East Anglia, Norwich, UK e-mail: [email protected] Abstract: Living organisms on Earth are characterized by three necessary features: a set of internal instructions encoded in DNA (software), a suite of proteins and associated macromolecules providing a boundary and internal structure (hardware), and a flux of energy. In addition, they replicate themselves through reproduction, a process that renders evolutionary change inevitable in a resource-limited world. Temperature has a profound effect on all of these features, and yet life is sufficiently adaptable to be found almost everywhere water is liquid. The thermal limits to survival are well documented for many types of organisms, but the thermal limits to completion of the life cycle are much more difficult to establish, especially for organisms that inhabit thermally variable environments. Current data suggest that the thermal limits to completion of the life cycle differ between the three major domains of life, bacteria, archaea and eukaryotes. At the very highest temperatures only archaea are found with the current high-temperature limit for growth being 122 °C. Bacteria can grow up to 100 °C, but no eukaryote appears to be able to complete its life cycle above *60 °C and most not above 40 °C. -
Biogeographical Patterns of Endolithic Infestation in an Invasive and an Indigenous Intertidal Marine Ecosystem Engineer
diversity Article Biogeographical Patterns of Endolithic Infestation in an Invasive and an Indigenous Intertidal Marine Ecosystem Engineer Aldwin Ndhlovu 1 , Christopher D. McQuaid 1,*, Katy Nicastro 2 , Nathalie Marquet 2 , Marcos Gektidis 3, Cristián J. Monaco 1,4 and Gerardo Zardi 1 1 Department of Zoology and Entomology, Rhodes University, Grahamstown 6140, South Africa; [email protected] (A.N.); [email protected] (C.J.M.); [email protected] (G.Z.) 2 CCMAR-CIMAR–Associated Laboratory, University of Algarve, Campus de Gambelas, 8005-139 Faro, Portugal; [email protected] (K.N.); [email protected] (N.M.) 3 Independent Researcher, Frankfurt, D-60325 Frankfurt, Germany; [email protected] 4 Southern Seas Ecology Laboratories, School of Biological Sciences and The Environment Institute, University of Adelaide, Adelaide 5005, Australia * Correspondence: [email protected] Received: 5 April 2019; Accepted: 23 April 2019; Published: 7 May 2019 Abstract: By altering the phenotypic properties of their hosts, endolithic parasites can modulate the engineering processes of marine ecosystem engineers. Here, we assessed the biogeographical patterns of species assemblages, prevalence and impact of endolithic parasitism in two mussel species that act as important ecosystem engineers in the southern African intertidal habitat, Perna perna and Mytilus galloprovincialis. We conducted large-scale surveys across three biogeographic regions along the South African coast: the subtropical east coast, dominated by the indigenous mussel, P. perna, the warm temperate south coast, where this species coexists with the invasive Mediterranean mussel, M. galloprovincialis, and the cool temperate west coast dominated by M. galloprovincialis. Infestation increased with mussel size, and in the case of M. -
Microbial Extremophiles in Aspect of Limits of Life. Elena V. ~Ikuta
Source of Acquisition NASA Marshall Space Flight Centel Microbial extremophiles in aspect of limits of life. Elena V. ~ikuta',Richard B. ~oover*,and Jane an^.^ IT LF " '-~ationalSpace Sciences and Technology CenterINASA, VP-62, 320 Sparkman Dr., Astrobiology Laboratory, Huntsville, AL 35805, USA. 3- Noblis, 3 150 Fairview Park Drive South, Falls Church, VA 22042, USA. Introduction. During Earth's evolution accompanied by geophysical and climatic changes a number of ecosystems have been formed. These ecosystems differ by the broad variety of physicochemical and biological factors composing our environment. Traditionally, pH and salinity are considered as geochemical extremes, as opposed to the temperature, pressure and radiation that are referred to as physical extremes (Van den Burg, 2003). Life inhabits all possible places on Earth interacting with the environment and within itself (cross species relations). In nature it is very rare when an ecotope is inhabited by a single species. As a rule, most ecosystems contain the functionally related and evolutionarily adjusted communities (consortia and populations). In contrast to the multicellular structure of eukaryotes (tissues, organs, systems of organs, whole organism), the highest organized form of prokaryotic life in nature is the benthic colonization in biofilms and microbial mats. In these complex structures all microbial cells of different species are distributed in space and time according to their functions and to physicochemical gradients that allow more effective system support, self- protection, and energy distribution. In vitro, of course, the most primitive organized structure for bacterial and archaeal cultures is the colony, the size, shape, color, consistency, and other characteristics of which could carry varies specifics on species or subspecies levels. -
Post-Genomic Characterization of Metabolic Pathways in Sulfolobus Solfataricus
Post-Genomic Characterization of Metabolic Pathways in Sulfolobus solfataricus Jasper Walther Thesis committee Thesis supervisors Prof. dr. J. van der Oost Personal chair at the laboratory of Microbiology Wageningen University Prof. dr. W. M. de Vos Professor of Microbiology Wageningen University Other members Prof. dr. W.J.H. van Berkel Wageningen University Prof. dr. V.A.F. Martins dos Santos Wageningen University Dr. T.J.G. Ettema Uppsala University, Sweden Dr. S.V. Albers Max Planck Institute for Terrestrial Microbiology, Marburg, Germany This research was conducted under the auspices of the Graduate School VLAG Post-Genomic Characterization of Metabolic Pathways in Sulfolobus solfataricus Jasper Walther Thesis Submitted in fulfilment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. dr. M.J. Kropff, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Monday 23 January 2012 at 11 a.m. in the Aula. Jasper Walther Post-Genomic Characterization of Metabolic Pathways in Sulfolobus solfataricus, 164 pages. Thesis, Wageningen University, Wageningen, NL (2012) With references, with summaries in Dutch and English ISBN 978-94-6173-203-3 Table of contents Chapter 1 Introduction 1 Chapter 2 Hot Transcriptomics 17 Chapter 3 Reconstruction of central carbon metabolism in Sulfolobus solfataricus using a two-dimensional gel electrophoresis map, stable isotope labelling and DNA microarray analysis 45 Chapter 4 Identification of the Missing