Dinoflagellate Diversity and Distribution in Chilika Lagoon with Description of New Records
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Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
Patrons De Biodiversité À L'échelle Globale Chez Les Dinoflagellés
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Transcriptome Analysis Reveals Nuclear-Encoded Proteins for The
Wisecaver and Hackett BMC Genomics 2010, 11:366 http://www.biomedcentral.com/1471-2164/11/366 RESEARCH ARTICLE Open Access TranscriptomeResearch article analysis reveals nuclear-encoded proteins for the maintenance of temporary plastids in the dinoflagellate Dinophysis acuminata Jennifer H Wisecaver and Jeremiah D Hackett* Abstract Background: Dinophysis is exceptional among dinoflagellates, possessing plastids derived from cryptophyte algae. Although Dinophysis can be maintained in pure culture for several months, the genus is mixotrophic and needs to feed either to acquire plastids (a process known as kleptoplastidy) or obtain growth factors necessary for plastid maintenance. Dinophysis does not feed directly on cryptophyte algae, but rather on a ciliate (Myrionecta rubra) that has consumed the cryptophytes and retained their plastids. Despite the apparent absence of cryptophyte nuclear genes required for plastid function, Dinophysis can retain cryptophyte plastids for months without feeding. Results: To determine if this dinoflagellate has nuclear-encoded genes for plastid function, we sequenced cDNA from Dinophysis acuminata, its ciliate prey M. rubra, and the cryptophyte source of the plastid Geminigera cryophila. We identified five proteins complete with plastid-targeting peptides encoded in the nuclear genome of D. acuminata that function in photosystem stabilization and metabolite transport. Phylogenetic analyses show that the genes are derived from multiple algal sources indicating some were acquired through horizontal gene transfer. Conclusions: These findings suggest that D. acuminata has some functional control of its plastid, and may be able to extend the useful life of the plastid by replacing damaged transporters and protecting components of the photosystem from stress. However, the dearth of plastid-related genes compared to other fully phototrophic algae suggests that D. -
Akashiwo Sanguinea
Ocean ORIGINAL ARTICLE and Coastal http://doi.org/10.1590/2675-2824069.20-004hmdja Research ISSN 2675-2824 Phytoplankton community in a tropical estuarine gradient after an exceptional harmful bloom of Akashiwo sanguinea (Dinophyceae) in the Todos os Santos Bay Helen Michelle de Jesus Affe1,2,* , Lorena Pedreira Conceição3,4 , Diogo Souza Bezerra Rocha5 , Luis Antônio de Oliveira Proença6 , José Marcos de Castro Nunes3,4 1 Universidade do Estado do Rio de Janeiro - Faculdade de Oceanografia (Bloco E - 900, Pavilhão João Lyra Filho, 4º andar, sala 4018, R. São Francisco Xavier, 524 - Maracanã - 20550-000 - Rio de Janeiro - RJ - Brazil) 2 Instituto Nacional de Pesquisas Espaciais/INPE - Rede Clima - Sub-rede Oceanos (Av. dos Astronautas, 1758. Jd. da Granja -12227-010 - São José dos Campos - SP - Brazil) 3 Universidade Estadual de Feira de Santana - Departamento de Ciências Biológicas - Programa de Pós-graduação em Botânica (Av. Transnordestina s/n - Novo Horizonte - 44036-900 - Feira de Santana - BA - Brazil) 4 Universidade Federal da Bahia - Instituto de Biologia - Laboratório de Algas Marinhas (Rua Barão de Jeremoabo, 668 - Campus de Ondina 40170-115 - Salvador - BA - Brazil) 5 Instituto Internacional para Sustentabilidade - (Estr. Dona Castorina, 124 - Jardim Botânico - 22460-320 - Rio de Janeiro - RJ - Brazil) 6 Instituto Federal de Santa Catarina (Av. Ver. Abrahão João Francisco, 3899 - Ressacada, Itajaí - 88307-303 - SC - Brazil) * Corresponding author: [email protected] ABSTRAct The objective of this study was to evaluate variations in the composition and abundance of the phytoplankton community after an exceptional harmful bloom of Akashiwo sanguinea that occurred in Todos os Santos Bay (BTS) in early March, 2007. -
182-188 Enhanced Chlorophyll a and Primary Production in the Northern
Author version: Mar. Biol. Res., vol.8; 2012; 182-188 Enhanced chlorophyll a and primary production in the northern Arabian Sea during the spring intermonsoon due to green Noctiluca (N. scintillans) bloom N. V. Madhua,*, R. Jyothibabua, P. A. Maheswaranb, K. A. Jayaraja, C.T. Achuthankuttya aNational Institute of Oceanography, Regional Centre, Kochi -18, India bNaval Physical Oceanographic Laboratory, Kochi - 21, India Abstract The surface waters of the northeastern Arabian Sea sustained relatively high chlorophyll a (av. 0.81 ± 0.80 mgm-3) and primary production (av. 29.5 ± 23.6 mgC m-3d-1) during the early spring intermonsoon 2000. This was caused primarily by a thick patch of algal bloom spread over a vast area between 17° to 21°N and 66 to 70°E. Satellite images showed exceptionally high concentration of chlorophyll a in the bloom areas, representing the annually occurring ‘spring blooms’ during February-March. The causative organism of the bloom was the dinoflagellate, Noctiluca scintillans Macartney (synonym Noctiluca miliaris Suriray, Dinophyceae: Noctilucidea), symbiotically associated with an autotrophic prasinophyte Pedinomonas noctilucae. The symbiosis between N. scintillans and P. noctilucae is likely responsible for their explosive growth (av. 3 million cells L-1) over an extensive area making the northeastern Arabian Sea highly productive (av. 607 ± 338 mg Cm-3d-1) even during an oligotrophic period such as spring intermonsoon. Key words: - Chlorophyll a; Algal bloom; Noctiluca scintillans, Pedinomonas noctilucae; Spring intermonsoon *Email of the corresponding author - [email protected] 2 Introduction The Arabian Sea (AS hereafter) is one of the most productive regions in the Indian Ocean (Madhupratap et al., 1996), exhibiting a bimodal temperature cycles annually, with lows during winter (northeast monsoon - NEM) and summer (southwest monsoon - SWM) seasons. -
The Planktonic Protist Interactome: Where Do We Stand After a Century of Research?
bioRxiv preprint doi: https://doi.org/10.1101/587352; this version posted May 2, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bjorbækmo et al., 23.03.2019 – preprint copy - BioRxiv The planktonic protist interactome: where do we stand after a century of research? Marit F. Markussen Bjorbækmo1*, Andreas Evenstad1* and Line Lieblein Røsæg1*, Anders K. Krabberød1**, and Ramiro Logares2,1** 1 University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N- 0316 Oslo, Norway 2 Institut de Ciències del Mar (CSIC), Passeig Marítim de la Barceloneta, 37-49, ES-08003, Barcelona, Catalonia, Spain * The three authors contributed equally ** Corresponding authors: Ramiro Logares: Institute of Marine Sciences (ICM-CSIC), Passeig Marítim de la Barceloneta 37-49, 08003, Barcelona, Catalonia, Spain. Phone: 34-93-2309500; Fax: 34-93-2309555. [email protected] Anders K. Krabberød: University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N-0316 Oslo, Norway. Phone +47 22845986, Fax: +47 22854726. [email protected] Abstract Microbial interactions are crucial for Earth ecosystem function, yet our knowledge about them is limited and has so far mainly existed as scattered records. Here, we have surveyed the literature involving planktonic protist interactions and gathered the information in a manually curated Protist Interaction DAtabase (PIDA). In total, we have registered ~2,500 ecological interactions from ~500 publications, spanning the last 150 years. -
Check List 15 (5): 951–963
15 5 ANNOTATED LIST OF SPECIES Check List 15 (5): 951–963 https://doi.org/10.15560/15.5.951 Dinoflagellates in tropical estuarine waters from the Maraú River, Camamu Bay, northeastern Brazil Caio Ceza da Silva Nunes1, Sylvia Maria Moreira Susini-Ribeiro1, 2, Kaoli Pereira Cavalcante3 1 Mestrado em Sistemas Aquáticos Tropicais, Universidade Estadual de Santa Cruz, Rodovia Jorge Amado, km 16, Salobrinho, 45662090 Ilhéus, BA, Brazil. 2 Universidade Estadual de Santa Cruz, Rodovia Jorge Amado, km 16, Salobrinho, 45662090 Ilhéus, BA, Brazil. 3 Universidade Estadual Vale do Acaraú, Avenida da Universidade, 850, Campus da Betânia, Betânia, 62040370, Sobral, CE, Brazil. Corresponding author: Caio Ceza da Silva Nunes, [email protected] Abstract Dinoflagellates display great diversity in tropical regions and play an important role in the complex microbial food webs of marine and brackish environments. The goal of this study is to identify planktonic dinoflagellates and their distribution in the estuary of the Maraú River, Camamu Bay, state of Bahia, in a region with increasing use of shellfish farming. Samples were carried out monthly from August 2006 to July 2007 at four stations along the estuary. Plankton was sampled with a 20 μm mesh net. We identified 20 dinoflagellate species. The greatest species richness was ob- served in the genera Protoperidinium (five spp.), Tripos (four spp.), and Prorocentrum (three spp.). Based on literature, six species were classified as potentially harmful: Akashiwo sanguinea, Dinophysis caudata, Gonyaulax spinifera, Prorocentrum micans, Scrippsiella cf. acuminata, and Tripos furca. Protoperidinium venustum was recorded for the first time in coastal waters of Bahia. Keywords Brackish water, Dinophyta, distribution, potentially harmful species, taxonomy. -
Genomics Reveals Alga-Associated Cyanobacteria Hiding in Plain Sight COMMENTARY John M
COMMENTARY Genomics reveals alga-associated cyanobacteria hiding in plain sight COMMENTARY John M. Archibalda,b,1 Cyanobacteria occupy a special place in the pantheon of prokaryotic life. It is in the ancestors of these ubiquitous microbes that oxygenic photosynthesis first evolved more than 2 billion y ago (1), and it is from endosymbiotic cyanobacteria that the plastids (chloro- plasts) of plants and algae are derived (2). Modern-day cyanobacteria are diverse in form and function; they in- clude coccoid marine picoplankton such as Prochloro- coccus (3), freshwater biofilm-forming genera [e.g., Gloeomargarita (4)], and filamentous taxa capable of fix- ing nitrogen [e.g., Nostoc (5)]. In PNAS, Nakayama et al. (6) add an exciting chapter to the story of cyanobacterial diversity. The authors describe the genome sequence of a cyanobacterium living ectosymbiotically on an eye- catching dinoflagellate named Ornithocercus magnifi- cus. Their results provide insight into the nature of an enigmatic symbiotic relationship and reveal the exis- tence of a cryptic, globally distributed cyanobacterial lineage that has until now gone unappreciated. Ornithocercus is indeed magnificent, even by di- Fig. 1. Light micrograph of an Ornithocercus noflagellate standards. The surface of this heterotro- dinoflagellate. The ectosymbiotic OmCyn cyanobacteria phic marine protist is decorated with crown-shaped, are visible within an extracellular chamber on the cellulosic outcroppings that extend from the cell body “upper” crown of the cell. Image courtesy of Takuro Nakayama (Tohoku University, Sendai, Japan). in different directions (Fig. 1) (7). The “upper” crown forms an extracellular chamber in which autofluores- cent cyanobacteria reside, and microscopic evidence genome of the organism, which they dubbed “OmCyn.” suggests that the bacteria can be vertically transmitted In a preliminary phylogenetic analysis of the 16S ribo- from mother to daughter chambers during host cell somal RNA (rRNA) gene, OmCyn was found to branch division (8). -
Dinoflagelados (Dinophyta) De Los Órdenes Prorocentrales Y Dinophysiales Del Sistema Arrecifal Veracruzano, México
Symbol.dfont in 8/10 pts abcdefghijklmopqrstuvwxyz ABCDEFGHIJKLMNOPQRSTUVWXYZ Symbol.dfont in 10/12 pts abcdefghijklmopqrstuvwxyz ABCDEFGHIJKLMNOPQRSTUVWXYZ Symbol.dfont in 12/14 pts abcdefghijklmopqrstuvwxyz ABCDEFGHIJKLMNOPQRSTUVWXYZ Dinoflagelados (Dinophyta) de los órdenes Prorocentrales y Dinophysiales del Sistema Arrecifal Veracruzano, México Dulce Parra-Toriz1,3, María de Lourdes Araceli Ramírez-Rodríguez1 & David Uriel Hernández-Becerril2 1. Facultad de Biología, Universidad Veracruzana, Circuito Gonzalo Beltrán s/n, Zona Universitaria, Xalapa, Veracruz, 91090 México; [email protected] 2. Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México (UNAM). Apartado Postal 70-305, México D.F. 04510 México; [email protected] 3. Posgrado en Ciencias del Mar. Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México (UNAM). Apartado Postal 70-305, México D.F. 04510 México; [email protected] Recibido 12-III-2010. Corregido 24-VIII-2010. Aceptado 23-IX-2010. Abstract: Dinoflagellates (Dinophyta) of orders Dinophysiales and Prorocentrales of the Veracruz Reef System, Mexico. Dinoflagellates are a major taxonomic group in marine phytoplankton communities in terms of diversity and biomass. Some species are also important because they form blooms and/or produce toxins that may cause diverse problems. The composition of planktonic dinoflagellates of the orders Prorocentrales and Dinophysiales, in the Veracruz Reef System, were obtained during the period of October 2006 to January 2007. For this, samples were taken from the surface at 10 stations with net of 30µm mesh, and were analyzed by light and scanning electron microscopy. Each species was described and illustrated, measured and their dis- tribution and ecological data is also given. A total of nine species were found and identified, belonging to four genera: Dinophysis was represented by three species; Prorocentrum by three, Phalacroma by two, and only one species of Ornithocercus was detected. -
Dinophysis - a Planktonic Dinoflagellate Genus Which Can Act Both As a Prey and a Predator of a Ciliate
MARINE ECOLOGY PROGRESS SERIES Vol. 69: 201-204.1991 Published January 10 Mar. Ecol. Prog. Ser. NOTE Dinophysis - a planktonic dinoflagellate genus which can act both as a prey and a predator of a ciliate Per Juel Hansen Marine Biological Laboratory. University of Copenhagen. Strandpromenaden 5, DK-3000 Helsinger, Denmark ABSTRACT: Heterotrophic members of the marine plankton (Nunclon, Denmark) at low light (50 pE m-2 S-') on a dinoflagellate genus Dinophysis are specialized predators, rotating wheel at 18 + 1 "C. The feeding behaviour of whose food includes the prostomatid ciliate Tiarina fusus. This heterotrophic (colourless) Dinophysis and the nature of ciliate differs from most planktonic ciliates in its ability to ingest prey of its own size including autotrophic Dinophysis food items were studied microscopically. For enumera- spp. However, when trying to catch a heterotrophic Dinophy- tion of plankton, Lugol-fixed water samples (at least sis sp., the ciliate is trapped instead by the dinoflagellate and 50 ml) were allowed to settle, and counted using an emptied via a feeding tube (peduncle),which originates from inverted microscope. For transmission electron micros- the flagellar pore of the dinoflagellate. The specific predation on a ciliate by a heterotrophic dinoflagellate represents a new copy, cells were fixed in a 0.1 M phosphate buffer (pH trophic link in the marine planktonic food web. 7.5) with l % Os04, 3 % glutaraldehyde and l mM sucrose. The fixed cells were stained in a saturated The existence of colourl.ess thecate dinoflagellates in solution of uranyl acetate in 70 % ethanol for 1 h, the marine pelagial has been recognized among taxo- dehydrated and imbedded in Epon. -
Development of Molecular Probes for Dinophysis (Dinophyceae) Plastid: a Tool to Predict Blooming and Explore Plastid Origin
Development of Molecular Probes for Dinophysis (Dinophyceae) Plastid: A Tool to Predict Blooming and Explore Plastid Origin Yoshiaki Takahashi,1 Kiyotaka Takishita,2 Kazuhiko Koike,1 Tadashi Maruyama,2 Takeshi Nakayama,3 Atsushi Kobiyama,1 Takehiko Ogata1 1School of Fisheries Sciences, Kitasato University, Sanriku, Ofunato, Iwate, 022-01011, Japan 2Marine Biotechnology Institute, Heita Kamaishi, Iwate, 026-0001, Japan 3Institute of Biological Sciences, University of Tsukuba, Tennoh-dai, Tsukuba, Ibaraki, 305-8577, Japan Received: 9 July 2004 / Accepted: 19 August 2004 / Online publication: 24 March 2005 Abstract Introduction Dinophysis are species of dinoflagellates that cause Some phytoplankton species are known to produce diarrhetic shellfish poisoning. We have previously toxins that accumulate in plankton feeders. In par- reported that they probably acquire plastids from ticular, toxin accumulation in bivalves causes food cryptophytes in the environment, after which they poisoning in humans, and often leads to severe eco- bloom. Thus monitoring the intracellular plastid nomic damage to the shellfish industry. density in Dinophysis and the source cryptophytes Diarrhetic shellfish poisoning (DSP) is a gastro- occurring in the field should allow prediction of intestinal syndrome caused by phytoplankton tox- Dinophysis blooming. In this study the nucleotide ins, including okadaic acid, and several analogues of sequences of the plastid-encoded small subunit dinophysistoxin (Yasumoto et al., 1985). These tox- ribosomal RNA gene and rbcL (encoding the large ins are derived from several species of dinoflagellates subunit of RuBisCO) from Dinophysis spp. were belonging to the genus Dinophysis (Yasumoto et al, compared with those of cryptophytes, and genetic 1980; Lee et al., 1989). Despite extensive studies in probes specific for the Dinophysis plastid were de- the last 2 decades, little is known about the eco- signed. -
Metagenomic Characterization of Unicellular Eukaryotes in the Urban Thessaloniki Bay
Metagenomic characterization of unicellular eukaryotes in the urban Thessaloniki Bay George Tsipas SCHOOL OF ECONOMICS, BUSINESS ADMINISTRATION & LEGAL STUDIES A thesis submitted for the degree of Master of Science (MSc) in Bioeconomy Law, Regulation and Management May, 2019 Thessaloniki – Greece George Tsipas ’’Metagenomic characterization of unicellular eukaryotes in the urban Thessaloniki Bay’’ Student Name: George Tsipas SID: 268186037282 Supervisor: Prof. Dr. Savvas Genitsaris I hereby declare that the work submitted is mine and that where I have made use of another’s work, I have attributed the source(s) according to the Regulations set in the Student’s Handbook. May, 2019 Thessaloniki - Greece Page 2 of 63 George Tsipas ’’Metagenomic characterization of unicellular eukaryotes in the urban Thessaloniki Bay’’ 1. Abstract The present research investigates through metagenomics sequencing the unicellular protistan communities in Thermaikos Gulf. This research analyzes the diversity, composition and abundance in this marine environment. Water samples were collected monthly from April 2017 to February 2018 in the port of Thessaloniki (Harbor site, 40o 37’ 55 N, 22o 56’ 09 E). The extraction of DNA was completed as well as the sequencing was performed, before the downstream read processing and the taxonomic classification that was assigned using PR2 database. A total of 1248 Operational Taxonomic Units (OTUs) were detected but only 700 unicellular eukaryotes were analyzed, excluding unclassified OTUs, Metazoa and Streptophyta. In this research-based study the most abundant and diverse taxonomic groups were Dinoflagellata and Protalveolata. Specifically, the most abundant groups of all samples are Dinoflagellata with 190 OTUs (27.70%), Protalveolata with 139 OTUs (20.26%) Ochrophyta with 73 OTUs (10.64%), Cercozoa with 67 OTUs (9.77%) and Ciliophora with 64 OTUs (9.33%).