Vivid Biofluorescence Discovered in the Nocturnal Springhare (Pedetidae)
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Classification of Mammals 61
© Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FORCHAPTER SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION Classification © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC 4 NOT FORof SALE MammalsOR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC. NOT FOR SALE OR DISTRIBUTION. 2ND PAGES 9781284032093_CH04_0060.indd 60 8/28/13 12:08 PM CHAPTER 4: Classification of Mammals 61 © Jones Despite& Bartlett their Learning,remarkable success, LLC mammals are much less© Jones stress & onBartlett the taxonomic Learning, aspect LLCof mammalogy, but rather as diverse than are most invertebrate groups. This is probably an attempt to provide students with sufficient information NOT FOR SALE OR DISTRIBUTION NOT FORattributable SALE OR to theirDISTRIBUTION far greater individual size, to the high on the various kinds of mammals to make the subsequent energy requirements of endothermy, and thus to the inabil- discussions of mammalian biology meaningful. -
The Beaver's Phylogenetic Lineage Illuminated by Retroposon Reads
www.nature.com/scientificreports OPEN The Beaver’s Phylogenetic Lineage Illuminated by Retroposon Reads Liliya Doronina1,*, Andreas Matzke1,*, Gennady Churakov1,2, Monika Stoll3, Andreas Huge3 & Jürgen Schmitz1 Received: 13 October 2016 Solving problematic phylogenetic relationships often requires high quality genome data. However, Accepted: 25 January 2017 for many organisms such data are still not available. Among rodents, the phylogenetic position of the Published: 03 March 2017 beaver has always attracted special interest. The arrangement of the beaver’s masseter (jaw-closer) muscle once suggested a strong affinity to some sciurid rodents (e.g., squirrels), placing them in the Sciuromorpha suborder. Modern molecular data, however, suggested a closer relationship of beaver to the representatives of the mouse-related clade, but significant data from virtually homoplasy- free markers (for example retroposon insertions) for the exact position of the beaver have not been available. We derived a gross genome assembly from deposited genomic Illumina paired-end reads and extracted thousands of potential phylogenetically informative retroposon markers using the new bioinformatics coordinate extractor fastCOEX, enabling us to evaluate different hypotheses for the phylogenetic position of the beaver. Comparative results provided significant support for a clear relationship between beavers (Castoridae) and kangaroo rat-related species (Geomyoidea) (p < 0.0015, six markers, no conflicting data) within a significantly supported mouse-related clade (including Myodonta, Anomaluromorpha, and Castorimorpha) (p < 0.0015, six markers, no conflicting data). Most of an organism’s phylogenetic history is fossilized in their heritable genomic material. Using data from genome sequencing projects, particularly informative regions of this material can be extracted in sufficient num- bers to resolve the deepest history of speciation. -
Hopping and Running on Two Legs Or Four from R
Nature Vol. 287 18 September 1980 187 Hopping and running on two legs or four from R. McNeil/ Alexander MOST mammals run on all fours but some run on just two legs (like men) or hop (like kangaroos). Some birds run, some hop and some do both. What are the relative merits of the different gaits? Do they differ in energy cost? Energy costs of running and hopping can be inferred from measurements of oxygen consumption. Some of the difficulties of physiological experimentation on moving animals can be avoided by training the Dipodomys deserti hopping on a moving belt to assess energy consumption. Experimental details animal to run on a moving belt as are given by Thompson et al. on p.223 of this issue of Nature. shown. Data has been collected for mammals ranging from mice to horses and different for animals of different sizes. running because it involves larger fluc lions, and for many birds (summarized by Until recently the data seemed to indicate tuations of potential energy (Alexander & 0 6 Fedak & Seeherman Nature 282, 713; that k was proportional to (body mass) · Goldspink Mechanics and energetics of 1979). Nearly all of it conforms to a simple for quadrupeds but to (body mass)0·8 for animal locomotion, 1977). rule: the power Prequired for level running bipeds. Consequently bipedalism was more Similar calculations grossly under at speed u is given by economical than quadrupedalism for small estimate the power requirements of small animals, but less economical for large ones. runners and hoppers, such as mice and P(.u)=P(O)+ku (1) Why, then, are there small quadrupeds quail: indeed they predict that k should be (such as mice) and large bipeds (such as proportional to (body mass)1. -
Multiple Molecular Evidences for a Living Mammalian Fossil
Multiple molecular evidences for a living mammalian fossil Dorothe´ e Huchon†‡, Pascale Chevret§¶, Ursula Jordanʈ, C. William Kilpatrick††, Vincent Ranwez§, Paulina D. Jenkins‡‡, Ju¨ rgen Brosiusʈ, and Ju¨ rgen Schmitz‡ʈ †Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel; §Department of Paleontology, Phylogeny, and Paleobiology, Institut des Sciences de l’Evolution, cc064, Universite´Montpellier II, Place E. Bataillon, 34095 Montpellier Cedex 5, France; ʈInstitute of Experimental Pathology, University of Mu¨nster, D-48149 Mu¨nster, Germany; ††Department of Biology, University of Vermont, Burlington, VT 05405-0086; and ‡‡Department of Zoology, The Natural History Museum, London SW7 5BD, United Kingdom Edited by Francisco J. Ayala, University of California, Irvine, CA, and approved March 18, 2007 (received for review February 11, 2007) Laonastes aenigmamus is an enigmatic rodent first described in their classification as a diatomyid suggests that Laonastes is a 2005. Molecular and morphological data suggested that it is the living fossil and a ‘‘Lazarus taxon.’’ sole representative of a new mammalian family, the Laonastidae, The two research teams also disagreed on the taxonomic and a member of the Hystricognathi. However, the validity of this position of Laonastes. According to Jenkins et al. (2), Laonastes family is controversial because fossil-based phylogenetic analyses is either the most basal group of the hystricognaths (Fig. 2A)or suggest that Laonastes is a surviving member of the Diatomyidae, nested within the hystricognaths (Fig. 2B). According to Dawson a family considered to have been extinct for 11 million years. et al. (3), Laonastes and the other Diatomyidae are the sister According to these data, Laonastes and Diatomyidae are the sister clade of the family Ctenodactylidae (i.e., gundies), a family that clade of extant Ctenodactylidae (i.e., gundies) and do not belong does not belong to the Hystricognathi, but to which it is to the Hystricognathi. -
Animal Health Requirements for Importation of Rodents, Hedgehogs, Gymnures and Tenrecs Into Denmark
INTERNATIONAL TRADE DIVISION ANIMAL HEALTH REQUIREMENTS FOR IMPORTATION OF RODENTS, HEDGEHOGS, GYMNURES AND TENRECS INTO DENMARK. La 23,0-2111 These animal health requirements concern veterinary import requirements and certification re- quirements alone and shall apply without prejudice to other Danish and EU legislation. Rodents, hedgehogs, gymnures and tenrecs meaning animals of the Genera/Species listed below: Order Family Rodentia Sciuridae (Squirrels) (except Petaurista spp., Biswamoyopterus spp., Aeromys spp., Eupetaurus spp., Pteromys spp., Glaucomys spp., Eoglaucomys spp., Hylopetes spp., Petinomys spp., Aeretes spp., Trogopterus spp., Belomys, Pteromyscus spp., Petaurillus spp., Iomys spp.), Gliridae (Dormous’), Heteromyidae (Kangaroo rats, kangaroo mice and rock pocket mice), Geomyidae (Gophers), Spalaci- dae (Blind mole rats, bamboo rats, root rats, and zokors), Calomyscidae (Mouse-like hamsters), Ne- somyidae (Malagasy rats and mice, climbing mice, African rock mice, swamp mice, pouched rats, and the white-tailed rat), Cricetidae (Hamsters, voles, lemmings, and New World rats and mice), Muridae (mice and rats and gerbils), Dipodidae (jerboas, jumping mice, and birch mice), Pedetidae (Spring- hare), Ctenodactylidae (Gundis), Diatomyidae (Laotian rock rat), Petromuridae (Dassie Rat), Thryon- omyidae (Cane rats), Bathyergidae (Blesmols), Dasyproctidae (Agoutis and acouchis), Agoutidae (Pacas), Dinomyidae (Pacarana), Caviidae (Domestic guinea pig, wild cavies, mara and capybara), Octodontidae (Rock rats, degus, coruros, and viscacha rats), Ctenomyidae (Tuco-tucos), Echimyidae (Spiny rats), Myocastoridae (Coypu ), Capromyidae (Hutias), Chinchillidae (Chinchillas and visca- chas), Abrocomidae (Chinchilla rats). Erinaceomorpha Erinaceidae (Hedgehogs and gymnures) Afrosoricida Tenrecidae (Tenrecs) The importation of rodents, hedgehogs, gymnures and tenrecs to Denmark (excluding import to ap- proved bodies, institutes and centres as defined in Art. 2, 1, (c) of Directive 92/65/EEC) must comply with the requirements of Danish order no. -
INSIGHTS INTO RELATIONSHIPS AMONG RODENT LINEAGES BASED on MITOCHONDRIAL GENOME SEQUENCE DATA a Dissertation by LAURENCE JOHN FR
INSIGHTS INTO RELATIONSHIPS AMONG RODENT LINEAGES BASED ON MITOCHONDRIAL GENOME SEQUENCE DATA A Dissertation by LAURENCE JOHN FRABOTTA Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY December 2005 Major Subject: Zoology INSIGHTS INTO RELATIONSHIPS AMONG RODENT LINEAGES BASED ON MITOCHONDRIAL GENOME SEQUENCE DATA A Dissertation by LAURENCE JOHN FRABOTTA Submitted to the Office of Graduate Studies of Texas A&M University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Approved by: Chair of Committee, Rodney L. Honeycutt Committee Members, James B. Woolley John W. Bickham James R. Manhart Head of Department, Vincent M. Cassone December 2005 Major Subject: Zoology iii ABSTRACT Insights into Relationships among Rodent Lineages Based on Mitochondrial Genome Sequence Data. (December 2005) Laurence John Frabotta, B.S.; M.S., California State University, Long Beach Chair of Advisory Committee: Dr. Rodney L. Honeycutt This dissertation has two major sections. In Chapter II, complete mitochondrial (mt DNA) genome sequences were used to construct a hypothesis for affinities of most major lineages of rodents that arose quickly in the Eocene and were well established by the end of the Oligocene. Determining the relationships among extant members of such old lineages can be difficult. Two traditional schemes on subordinal classification of rodents have persisted for over a century, dividing rodents into either two or three suborders, with relationships among families or superfamilies remaining problematic. The mtDNA sequences for four new rodent taxa (Aplodontia, Cratogeomys, Erethizon, and Hystrix), along with previously published Euarchontoglires taxa, were analyzed under parsimony, likelihood, and Bayesian criteria. -
Heteromys Gaumeri Cheryl A
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Mammalogy Papers: University of Nebraska State Museum, University of Nebraska State Museum 10-26-1989 Heteromys gaumeri Cheryl A. Schmidt Angelo State University Mark D. Engstrom Royal Ontario Museum Hugh H. Genoways University of Nebraska - Lincoln, [email protected] Follow this and additional works at: http://digitalcommons.unl.edu/museummammalogy Part of the Zoology Commons Schmidt, Cheryl A.; Engstrom, Mark D.; and Genoways, Hugh H., "Heteromys gaumeri" (1989). Mammalogy Papers: University of Nebraska State Museum. 96. http://digitalcommons.unl.edu/museummammalogy/96 This Article is brought to you for free and open access by the Museum, University of Nebraska State at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Mammalogy Papers: University of Nebraska State Museum by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. MAMMALIANSPECIES No. 345, pp. 1-4, 4 figs. Heteromys gaumeri. By Cheryl A. Schmidt, Mark D. Engstrom, and Hugh H. Genovays Published 26 October 1989 by The American Society of Mammalogists Heteromys Desmarest, 18 17 pale-ochraceous lateral line often is present in H. desmarestianus, but seldom extends onto cheeks and ankles); having a relatively well- Heteromys Desmarest, 1817: 181. Type species Mus anomalus haired tail with a conspicuous terminal tuft (the tail in H. desma- Thompson, 1815. restianus is sparsely haired, without a conspicuous terminal tuft); CONTEXT AND CONTENT. Order Rodentia, Suborder and in having a baculum with a relatively narrow shaft (Engstrom Sciurognathi (Carleton, 1984), Infraorder Myomorpha, Superfamily et al., 1987; Genoways, 1973; Goldman, 1911). H. gaumeri has Geomyoidea, Family Heteromyidae, Subfamily Heteromyinae. -
Placement and Recovery of Seed Caches by a Solitary Rodent
PLACEMENT AND RECOVERY OF SEED CACHES BY A SOLITARY RODENT, ORD’S KANGAROO RAT (DIPODOMYS ORDII) Except where reference is made to the work of others, the work described in this dissertation is my own or was done in collaboration with my advisory committee. This dissertation does not include proprietary or classified information. _____________________________________________________ Jeremy Andrew White _____________________________ ______________________________ Robert S. Lishak Troy L. Best, Chair Associate Professor Professor Biological Sciences Biological Sciences _____________________________ ______________________________ Michael C. Wooten George Flowers Professor Interim Dean Biological Sciences Graduate School PLACEMENT AND RECOVERY OF SEED CACHES BY A SOLITARY RODENT, ORD’S KANGAROO RAT (DIPODOMYS ORDII) Jeremy Andrew White A Dissertation Submitted to the Graduate Faculty of Auburn University in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy Auburn, Alabama August 9, 2008 PLACEMENT AND RECOVERY OF SEED CACHES BY A SOLITARY RODENT, ORD’S KANGAROO RAT (DIPODOMYS ORDII) Jeremy Andrew White Permission is granted to Auburn University to make copies of this dissertation at its discretion, upon request of individuals or institutions at their expense. The author reserves all publication rights. __________________________________________ Signature of Author __________________________________________ Date of Graduation iii VITA Jeremy Andrew White, son of Rockey Craig White and Nancy Tinstman Remington, was born 11 June 1975, in Reno, Nevada. He moved to Elko, Nevada, in 1989 and graduated from Elko High School in 1993. After high school, Jeremy enrolled in the University of Nevada at Las Vegas, and in 1997, he received a Bachelor of Science degree in organismal biology from UNLV. After graduation, he moved to Reno and from 1997 to 2000 Jeremy worked as a substitute teacher for Washoe County School District, a lab instructor at Truckee Meadows Community College, and a wildland firefighter for the Bureau of Land Management. -
The Feasibility of Reintroducing African Wild Dogs (Lycaon Pictus) Into the Great Fish River Nature Reserve, Eastern Cape, South Africa
The feasibility of reintroducing African wild dogs (Lycaon pictus) into the Great Fish River Nature Reserve, Eastern Cape, South Africa. A thesis submitted in fulfilment of the requirements for the degree of MASTER OF SCIENCE of RHODES UNIVERSITY By SAMANTHA KARIN PAGE February 2014 Abstract With a declining population of roughly 3000-5000 individuals in Africa, African wild dogs (Lycaon pictus) are one of the most endangered carnivores in the world. As the global human population expands, it is becoming increasingly unlikely that large portions of land will be set aside for conservation, especially in developing countries. Thus, recent wild dog conservation efforts in South Africa have concentrated on establishing a managed metapopulation. A metapopulation is a group of geographically isolated subpopulations of a species that are managed (using supplementation and harvesting) to mimic natural gene flow. The Great Fish River Nature Reserve (GFRNR) in the Eastern Cape Province of South Africa has been identified as a potential reserve to become part of the national wild dog metapopulation. My research aimed to conduct a feasibility assessment of the long-term (~ 25 years) success of a wild dog reintroduction into the GFRNR. This assessment included biological modelling of wild dogs and their expected prey, and determining the potential anthropogenic threats to wild dogs on the private and communal land surrounding the reserve. I used VORTEX population modelling and determined that the GFRNR is likely to have a wild dog carrying capacity of ~22 individuals. Using a 25-year modelling simulation, the most appropriate wild dog reintroduction scenario would be to reintroduce six females and four males initially and supplement the population with one female and two males in years 3, 10, 15 and 23. -
Over 40% of All Mammal Species in the Next 2 Labs
Rodents Class Rodentia 5 (depends) Suborders 33 (maybe more) Families about 481 genera, 2277+ species Over 40% of all mammal species in the next 2 labs Sciuromorpha: squirrels, dormice, mountain beaver, and relatives Castorimorpha: beavers, gophers, kangaroo rats, pocket mice, and relatives Myomorpha: mice, rats, gerbils, jerboas, and relatives Anomaluromorpha: scaly-tailed squirrels and springhares Hystricomorpha: hystricognath rodents...lots of South American and African species, mostly Because rodents are such a Why rodents are evil... diverse and speciose group, their higher-level taxonomy keeps being revised. Hard to keep up! In recent decades, there have been 2, 3, 4 or 5 Suborders, depending on the revision, and Families keep getting pooled and split. We’ll just focus on some of the important Families and leave their relationships to future generations. They are a diverse and Why rodents are fun... speciose group, occur in just about every kind of habitat and climate, and show the broadest ecological diversity of any group of mammals. There are terrestrial, arboreal, scansorial, subterranean, and semiaquatic rodents. There are solitary, pair-forming, and social rodents. There are plantigrade, cursorial, You could spend your whole fossorial, bipedal, swimming life studying this group! and gliding rodents. (Some do.) General characteristics of rodents •Specialized ever-growing, self-sharpening incisors (2 upper, 2 lower) separated from cheek teeth by diastema; no canines •Cheek teeth may be ever-growing or rooted, but show a variety of cusp patterns, often with complex loops and folds of enamel and dentine reflecting the diet; cusp patterns also often useful taxonomically •Mostly small, average range of body size is 20-100 g, but some can get pretty large (capybara is largest extant species, may reach 50 kg) •Mostly herbivorous (including some specialized as folivores and granivores) or omnivorous •Females with duplex uterus, baculum present in males •Worldwide distribution, wide range of habitats and ecologies And now, on to a few Families.. -
Pika and Vole Mitochondrial Genomes Increase Support for Both Rodent Monophyly and Glires
Gene 294 (2002) 119–129 www.elsevier.com/locate/gene Pika and vole mitochondrial genomes increase support for both rodent monophyly and glires Yu-Hsin Lin*, Peter J. Waddell1, David Penny Allan Wilson Centre for Molecular Ecology and Evolution, Institute of Molecular BioSciences, Massey University, Palmerston North, New Zealand Received 4 December 2001; received in revised form 28 March 2002; accepted 14 May 2002 Received by T. Gojobori Abstract Complete mitochondrial genomes are reported for a pika (Ochotona collaris) and a vole (Volemys kikuchii) then analysed together with 35 other mitochondrial genomes from mammals. With standard phylogenetic methods the pika joins with the other lagomorph (rabbit) and the vole with the other murid rodents (rat and mouse). In addition, with hedgehog excluded, the seven rodent genomes consistently form a homogeneous group in the unrooted placental tree. Except for uncertainty of the position of tree shrew, the clade Glires (monophyletic rodents plus lagomorphs) is consistently found. The unrooted tree obtained by ProtML (Protein Maximum Likelihood, a program in MOLPHY) is compatible with a reclassification of mammals [Syst. Biol. 48, 1–5 (1999)] which is also supported by other recent studies. However, when this tree is rooted with marsupials plus platypus, the outgroup often joins the lineage leading to the three murid rodents, so the rodents are no longer monophyletic. Apart from misplacing the root, the presence of the outgroups also distorts other parts of the unrooted tree. Either constraining the tree to maintain rodents monophyletic, or omitting murids, maintains the ingroup tree and sees the outgroup join on the edge to Xenarthra, to Afrotheria, or to these two groups together. -
Postcranial Morphology and Springing Adaptations in Pedetidae from Arrisdrift, Middle Miocene (Namibia)
Palaeont. afr., 34, 101 -109 (1997) POSTCRANIAL MORPHOLOGY AND SPRINGING ADAPTATIONS IN PEDETIDAE FROM ARRISDRIFT, MIDDLE MIOCENE (NAMIBIA). by Brigitte Senut Laboratoire de Paleontologie du Museum national d' Histoire naturelle; URA 12 CNRS; 8 rue Bu.ffon, 75005 Paris, France ABSTRACT Arrisdrift, an early MiddJe Miocene site in the Proto-Orange river deposits of Namibia, was excavated in the mid 1970s by Corvinus and since 1993 by the Namibia Palaeontology Expedition. These excavations resulted in the discovery of several postcranial elements of springhares. Generally, these appear to have been smaller than those of modem Pedetes capensis or P. surdasrer, but more robust that those of the extant taxa. The Arri sdrift pedetid was larger than the lower Miocene Namibian species, Parapedetes namaquensis; must smaller and less robust than the lower M iocene East African species, Megapedetes pentadactylus; but larger than Pedetes laeroliensis from the Pliocene site ofLaeto li (Tanzania). The limb proportions, morphology of the proximal femur, distal tibia, astragalus and the calcaneum suggest that the pedetid from Arrisdrift was saltatorial, but to a lesser degree than modern springhares. lt exhibits features probably related to locomotor behaviour which are different from Parapedetes, Megapedetes and Pedetes suggest that they may represent a different genus in accordance with results of research on the cranio-dental remains (Mein & Senut, in prep.) KEYWORDS: Pedetidae, Middle Miocene, Namibia, post-cranial anatomy, Arrisdrift. INTRODUCTION Mein et at. in press) led to the discovery of other The earliest representatives of the family Pedetidae pedetids which are still under study. have been found in the early Miocene of East Africa in Miocene Pedetidae have been known in Nambia Kenya (Songhor, Rusinga) and in Uganda (Napak) with since 1926 when Stromer published the first remains, Megapedetes p entadacty lus (M acinnes 1957; Parapedetes namaquensis, from the early Miocene site, Macinnes in Bishop 1962; Lavocat 1973) and a smaller Elizabethfeld.