Title Retro-Aldol-Type Fragmentation of Reducing Sugars
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Modelling Panspermia in the TRAPPIST-1 System
October 13, 2017 Modelling panspermia in the TRAPPIST-1 system James A. Blake1,2*, David J. Armstrong1,2, Dimitri Veras1,2 Abstract The recent ground-breaking discovery of seven temperate planets within the TRAPPIST-1 system has been hailed as a milestone in the development of exoplanetary science. Centred on an ultra-cool dwarf star, the planets all orbit within a sixth of the distance from Mercury to the Sun. This remarkably compact nature makes the system an ideal testbed for the modelling of rapid lithopanspermia, the idea that micro-organisms can be distributed throughout the Universe via fragments of rock ejected during a meteoric impact event. We perform N-body simulations to investigate the timescale and success-rate of lithopanspermia within TRAPPIST-1. In each simulation, test particles are ejected from one of the three planets thought to lie within the so-called ‘habitable zone’ of the star into a range of allowed orbits, constrained by the ejection velocity and coplanarity of the case in question. The irradiance received by the test particles is tracked throughout the simulation, allowing the overall radiant exposure to be calculated for each one at the close of its journey. A simultaneous in-depth review of space microbiological literature has enabled inferences to be made regarding the potential survivability of lithopanspermia in compact exoplanetary systems. 1Department of Physics, University of Warwick, Coventry, CV4 7AL 2Centre for Exoplanets and Habitability, University of Warwick, Coventry, CV4 7AL *Corresponding author: [email protected] Contents Universe, and can propagate from one location to another. This interpretation owes itself predominantly to the works of William 1 Introduction1 Thompson (Lord Kelvin) and Hermann von Helmholtz in the 1.1 Mechanisms for panspermia...............2 latter half of the 19th Century. -
Prebiological Evolution and the Metabolic Origins of Life
Prebiological Evolution and the Andrew J. Pratt* Metabolic Origins of Life University of Canterbury Keywords Abiogenesis, origin of life, metabolism, hydrothermal, iron Abstract The chemoton model of cells posits three subsystems: metabolism, compartmentalization, and information. A specific model for the prebiological evolution of a reproducing system with rudimentary versions of these three interdependent subsystems is presented. This is based on the initial emergence and reproduction of autocatalytic networks in hydrothermal microcompartments containing iron sulfide. The driving force for life was catalysis of the dissipation of the intrinsic redox gradient of the planet. The codependence of life on iron and phosphate provides chemical constraints on the ordering of prebiological evolution. The initial protometabolism was based on positive feedback loops associated with in situ carbon fixation in which the initial protometabolites modified the catalytic capacity and mobility of metal-based catalysts, especially iron-sulfur centers. A number of selection mechanisms, including catalytic efficiency and specificity, hydrolytic stability, and selective solubilization, are proposed as key determinants for autocatalytic reproduction exploited in protometabolic evolution. This evolutionary process led from autocatalytic networks within preexisting compartments to discrete, reproducing, mobile vesicular protocells with the capacity to use soluble sugar phosphates and hence the opportunity to develop nucleic acids. Fidelity of information transfer in the reproduction of these increasingly complex autocatalytic networks is a key selection pressure in prebiological evolution that eventually leads to the selection of nucleic acids as a digital information subsystem and hence the emergence of fully functional chemotons capable of Darwinian evolution. 1 Introduction: Chemoton Subsystems and Evolutionary Pathways Living cells are autocatalytic entities that harness redox energy via the selective catalysis of biochemical transformations. -
Inhibition of Neuroinflammatory Nitric Oxide Signaling Suppresses Glycation and Prevents Neuronal Dysfunction in Mouse Prion Disease
Inhibition of neuroinflammatory nitric oxide signaling suppresses glycation and prevents neuronal dysfunction in mouse prion disease Julie-Myrtille Bourgognona, Jereme G. Spiersb, Sue W. Robinsonc, Hannah Scheiblichd, Paul Glynnc, Catharine Ortorie, Sophie J. Bradleyf, Andrew B. Tobinf, and Joern R. Steinertg,1 aCentre for Immunobiology, University of Glasgow, Glasgow, G12 8TA, United Kingdom; bDepartment of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, VIC 3083, Melbourne, Australia; cMedical Research Council Toxicology Unit, University of Leicester, Leicester, LE1 9HN, United Kingdom; dDepartment of Neurodegenerative Disease and Geriatric Psychiatry/Neurology, University of Bonn, Bonn 53127, Germany; eSchool of Pharmacy, University of Nottingham, Nottingham NG7 2RD, United Kingdom; fCentre for Translational Pharmacology, Veterinary and Life Sciences, University of Glasgow, Glasgow, G12 8QQ, United Kingdom; and gSchool of Life Sciences, Queen’s Medical Centre, University of Nottingham, Nottingham, NG7 2UH, United Kingdom Edited by Juan Carlos Saez, University of Valparaiso, Valparaiso, Chile, and approved January 22, 2021 (received for review May 14, 2020) Several neurodegenerative diseases associated with protein mis- system where it is synthesized by NO synthases (neuronal NOS folding (Alzheimer’s and Parkinson’s disease) exhibit oxidative and [nNOS], inducible NOS [iNOS], and endothelial NOS [eNOS]). nitrergic stress following initiation of neuroinflammatory path- Excessive NO production -
Chemical Evolution Theory of Life's Origins the Lattimer, AST 248, Lecture 13 – P.2/20 Organics
Chemical Evolution Theory of Life's Origins 1. the synthesis and accumulation of small organic molecules, or monomers, such as amino acids and nucleotides. • Production of glycine (an amino acid) energy 3HCN+2H2O −→ C2H5O2N+CN2H2. • Production of adenine (a base): 5 HCN → C5H5N5, • Production of ribose (a sugar): 5H2CO → C5H10O5. 2. the joining of these monomers into polymers, including proteins and nucleic acids. Bernal showed that clay-like materials could serve as sites for polymerization. 3. the concentration of these molecules into droplets, called protobionts, that had chemical characteristics different from their surroundings. This relies heavily on the formation of a semi-permeable membrane, one that allows only certain materials to flow one way or the other through it. Droplet formation requires a liquid with a large surface tension, such as water. Membrane formation naturally occurs if phospholipids are present. 4. The origin of heredity, or a means of relatively error-free reproduction. It is widely, but not universally, believed that RNA-like molecules were the first self-replicators — the RNA world hypothesis. They may have been preceded by inorganic self-replicators. Lattimer, AST 248, Lecture 13 – p.1/20 Acquisition of Organic Material and Water • In the standard model of the formatio of the solar system, volatile materials are concentrated in the outer solar system. Although there is as much carbon as nearly all other heavy elements combined in the Sun and the bulk of the solar nebula, the high temperatures in the inner solar system have lead to fractional amounts of C of 10−3 of the average. -
48 3-1-4. Reactions Using Mutant FSA A129S Another Mutant Enzyme
Results _ 3-1-4. Reactions using mutant FSA A129S Another mutant enzyme, A129S, which has serine at 129th residue instead of alanine (Fig.3-11a), has high potential to catalyze the reactions using DHA as a donor substrate. Virtually, the kcat/Km value for DHA is more than 12 fold of that of WT (Schürmann, 2001). This implies that larger amounts of products can be acquired with A129S than with WT, or unfavorable reactions with WT may be accomplished with the mutant enzyme. Firstly, FSA A129S was produced in DH5α with pUC18 plasmid vector and purified with same method as WT was done (Fig.3-11b, Table 3-8). This mutant enzyme was overexpressed well and a strong band corresponding to FSA was seen on SDS-PAGE gel (as 10~15% of total protein in crude extract). In addition, this mutant enzyme held the stability against high temperature. Thus, a heat treatment step was part of the purification protocol. However, protein solution obtained from hydroxyapatite column of the final purification step showed still a few extra protein bands on SDS-PAGE gel (Fig.3-11b). Although it contained those extra proteins, the purity appeared to be more than 90% on the gel and the specific activity was quite high enough to assay the catalytic ability of the enzyme for several substrates. Indeed, even crude extract showed higher specific activity than purified WT had (Table 3-8). Three reactions (scheme 3-1) were probed to assay catalytic ability of both FSA WT and A129S. Dihydroxyacetone (DHA) or hydroxyacetone (HA) were used as donor substrates, and formaldehyde or glycolaldehyde as acceptor. -
Nomination Background: Dihydroxyacetone (CASRN: 96-26-4)
SUMMARY OF DATA FOR CHEMICAL SELECTION Dihydroxyacetone 96-26-4 BASIS OF NOMINATION TO THE CSWG As consumers have become more mindful of the hazards ofa "healthy tan," more individuals have turned to sunless tanning. Sunless tanning products represent about 10% of the $400 million market for suntan preparations, and these products are the fastest growing segment of the suntanning preparation market. All sunless tanners contain dihydroxyacetone. Information on the toxicity of dihydroxyacetone appears contradictory. A mutagen that induces DNA strand breaks, dihydroxyacetone is also an intermediate in carbohydrate metabolism in higher plants and animals. Such contradictions are not unprecedented, and it has been suggested that autooxidation of cx-hydroxycarbonyl compounds including reducing sugars may play a role in diseases associated with age and diabetes (Morita, 1991 ). When dihydroxyacetone was applied to the skin of mice, no carcinogenic effect was observed. It is unclear whether this negative response was caused by a failure ofthe compound to penetrate the skin. If so, extrapolating the dermal results to other routes of exposure would not be appropriate. NCI is nominating dihydroxyacetone to the NTP for dermal penetration studies in rats and mice to determine whether dihydroxyacetone can penetrate the skin. This information will clarify whether additional testing of dihydroxyacetone is warranted. Dihydroxyacetone 96-26-4 CHEMICAL IDENTIFICATION CAS Registry Number: 96-26-4 Chemical Abstracts Service Name: 1,3-Dihydroxy-2-propanone (9CI; 8CI) Synonyms and Tradenames: 1,3-Dihydroxydimethyl ketone; Chromelin; CTF A 00816; Dihyxal; Otan; Oxantin; Oxatone; Soleal; Triulose; Viticolor Structural Class: Ketone, ketotriose compound Structure. Molecular Formula. and Molecular Weight: 0 II /c"-. -
The Pichia Pastoris Dihydroxyacetone Kinase Is a PTS1-Containing, but Cytosolic, Protein That Is Essential for Growth on Methanol
. 14: 759–771 (1998) The Pichia pastoris Dihydroxyacetone Kinase is a PTS1-containing, but Cytosolic, Protein that is Essential for Growth on Methanol GEORG H. LU} ERS†, RAJ ADVANI, THIBAUT WENZEL AND SURESH SUBRAMANI* Department of Biology, University of California at San Diego, La Jolla, California 92093–0322, U.S.A. Received 11 November 1997; accepted 27 January 1998 Dihydroxyacetone kinase (DAK) is essential for methanol assimilation in methylotrophic yeasts. We have cloned the DAK gene from Pichia pastoris by functional complementation of a mutant that was unable to grow on methanol. An open reading frame of 1824 bp was identified that encodes a 65·3 kDa protein with high homology to DAK from Saccharomyces cerevisiae. Although DAK from P. pastoris contained a C-terminal tripeptide, TKL, which we showed can act as a peroxisomal targeting signal when fused to the green fluorescent protein, the enzyme was primarily cytosolic. The TKL tripeptide was not required for the biochemical function of DAK because a deletion construct lacking the DNA encoding this tripeptide was able to complement the P. pastoris dakÄ mutant. Peroxisomes, which are essential for growth of P. pastoris on methanol, were present in the dakÄ mutant and the import of peroxisomal proteins was not disturbed. The dakÄ mutant grew at normal rates on glycerol and oleate media. However, unlike the wild-type cells, the dakÄ mutant was unable to grow on methanol as the sole carbon source but was able to grow on dihydroxyacetone at a much slower rate. The metabolic pathway explaining the reduced growth rate of the dakÄ mutant on dihydroxyacetone is discussed. -
Matrix Scientific PO BOX 25067 COLUMBIA, SC 29224-5067 Telephone: 803-788-9494 Fax: 803-788-9419 SAFETY DATA SHEET Transportation Emergency: 3E Co
Matrix Scientific PO BOX 25067 COLUMBIA, SC 29224-5067 Telephone: 803-788-9494 Fax: 803-788-9419 SAFETY DATA SHEET Transportation Emergency: 3E Co. (5025) 800-451-8346 1. Product Identification Name 1,3-Dihydroxyacetone Catalog Number 119322 CAS Registry Number [96-26-4] Company Matrix Scientific Physical Address 131 Pontiac Business Center Drive Elgin, SC 29045 USA Telephone/Fax (803)788-9494/(803)788-9419 2. Hazard Identification Hazardous Ingredients 1,3-Dihydroxyacetone GHS label elements, including precautionary statements Pictogram Signal word WARNING Hazard statement(s) H317 H317 May cause an allergic skin reaction H319 H319 Causes serious eye irritation Precautionary statement(s) P280 Wear protective gloves/protective clothing/eye protection/face protection. P305+351+338 IF IN EYES: Rinse cautiously with water for several minutes. Remove contact lenses if present and easy to do - continue rinsing. P411 Store at temperatures not exceeding 0°C 3. Composition, Information or Ingredients Name 1,3-Dihydroxyacetone 4. First Aid Measures 1 Last Updated 11/20/2018 Eye Contact: Check for and remove any contact lenses. Immediately flush eyes with clean, running water for at least 15 minutes while keeping eyes open. Cool water may be used. Seek medical attention. Skin Contact: After contact with skin, wash with generous quantities of running water. Gently and thoroughly wash affected area with running water and non- abrasive soap. Cool water may be used. Cover the affected area with emollient. Seek medical attention. Wash any contaminated clothing prior to reusing. Inhalation: Remove the victim from the source of exposure to fresh, uncontaminated air. If victim's breathing is difficult, administer oxygen. -
United States Patent Office
- 2,926,180 United States Patent Office Patented Feb. 23, 1960 2 cycloalkyl, etc. These substituents R and R' may also be substituted with various groupings such as carboxyl 2,926,180 groups, sulfo groups, halogen atoms, etc. Examples of CONDENSATION OF AROMATIC KETONES WITH compounds which are included within the scope of this CARBOHYDRATES AND RELATED MATER ALS 5 general formula are acetophenone, propiophenone, benzo Carl B. Linn, Riverside, Ill., assignor, by mesne assign phenone, acetomesitylene, phenylglyoxal, benzylaceto ments, to Universal Oil Products Company, Des phenone, dypnone, dibenzoylmethane, benzopinacolone, Plaines, Ill., a corporation of Delaware dimethylaminobenzophenone, acetonaphthalene, benzoyl No Drawing. Application June 18, 1957 naphthalene, acetonaphthacene, benzoylnaphthacene, ben 10 zil, benzilacetophenone, ortho-hydroxyacetophenone, para Serial No. 666,489 hydroxyacetophenone, ortho - hydroxy-para - methoxy 5 Claims. (C. 260-345.9) acetophenone, para-hydroxy-meta-methoxyacetophenone, zingerone, etc. This application is a continuation-in-part of my co Carbohydrates which are condensed with aromatic pending application Serial No. 401,068, filed December 5 ketones to form a compound selected from the group 29, 1953, now Patent No. 2,798,079. consisting of an acylaryl-desoxy-alditol and an acylaryl This invention relates to a process for interacting aro desoxy-ketitol include simple sugars, their desoxy- and matic ketones with carbohydrates and materials closely omega-carboxy derivatives, compound sugars or oligo related to carbohydrates. The process relates more par saccharides, and polysaccharides. ticularly to the condensation of simple sugars, their 20 Simple sugars include dioses, trioses, tetroses, pentoses, desoxy- and their omega-carboxy derivatives, compound hexoses, heptoses, octoses, nonoses, and decoses. Com sugars or oligosaccharides, and polysaccharides with aro pound sugars include disaccharides, trisaccharides, and matic ketones in the presence of a hydrogen fluoride tetrasaccharides. -
Assessment of DHA in Self-Tanning Creams Applied in Spray Booths
Assessment of DHA in self-tanning creams applied in spray booths Lena Höglund MSc. DTC (Danish Toxicology Centre): Betty Bügel Mogensen Rossana Bossi Marianne Glasius National Environmental Research Institute of Denmark Survey of Chemical Substances in Consumer Products, No. 72 2006 The Danish Environmental Protection Agency will, when opportunity offers, publish reports and contributions relating to environmental research and development projects financed via the Danish EPA. Please note that publication does not signify that the contents of the reports necessarily reflect the views of the Danish EPA. The reports are, however, published because the Danish EPA finds that the studies represent a valuable contribution to the debate on environmental policy in Denmark. Contents SUMMARY AND CONCLUSIONS 5 1 INTRODUCTION 7 2 OBJECTIVES 10 3 TECHNIQUES 12 3.1 DESCRIPTION OF TECHNIQUES 12 3.1.1 Manual turbine spray 12 3.1.2 Third-generation booths (closed booths) 13 3.1.3 Fourth-generation booths (open booths) 15 3.2 SAFETY INSTRUCTIONS 16 3.2.1 General remarks on enterprises' safety instructions 16 3.2.2 Safety instructions from the authorities 16 3.2.3 Advice for customers from personnel 16 4 SUBSTANCES CONTAINED IN PRODUCTS 20 5 HEALTH ASSESSMENT 22 5.1 TOXOCOLOGICAL PROFILE OF DIHYDROXYACETONE (DHA) (CAS NO. 96-26-4) 22 5.2 BRIEF HEALTH ASSESSMENT OF ETHOXYDIGLYCOL (CAS NO. 111-90-0) 26 5.3 BRIEF HEALTH ASSESSMENT OF PHENOXYETHANOL (CAS NO.122-99-6) 27 5.4 BRIEF HEALTH ASSESSMENT OF GLYCERINE (CAS NO. 56-81-5) 27 5.5 BRIEF HEALTH ASSESSMENT OF POLYSORBATES AND SORBITAN ESTERS 27 5.6 BRIEF HEALTH ASSESSMENT OF ERYTHRULOSE (CAS NO. -
Unit 1: Carbohydrates Structure and Biological Importance: Monosaccharides, Disaccharides, Polysaccharides and Glycoconjugates
CBCS 3rd Semester Core Course VII Paper: Fundamentals of Biochemistry Unit 1: Carbohydrates Structure and Biological importance: Monosaccharides, Disaccharides, Polysaccharides and Glycoconjugates By- Dr. Luna Phukan Definition The carbohydrates are a group of naturally occurring carbonyl compounds (aldehydes or ketones) that also contain several hydroxyl groups. It may also include their derivatives which produce such compounds on hydrolysis. They are the most abundant organic molecules in nature and also referred to as “saccharides”. The carbohydrates which are soluble in water and sweet in taste are called as “sugars”. Structure of Carbohydrates Carbohydrates consist of carbon, hydrogen, and oxygen. The general empirical structure for carbohydrates is (CH2O)n. They are organic compounds organized in the form of aldehydes or ketones with multiple hydroxyl groups coming off the carbon chain. The building blocks of all carbohydrates are simple sugars called monosaccharides. A monosaccharide can be a polyhydroxy aldehyde (aldose) or a polyhydroxy ketone (ketose) The carbohydrates can be structurally represented in any of the three forms: 1. Open chain structure. 2. Hemi-acetal structure. 3. Haworth structure. Open chain structure – It is the long straight-chain form of carbohydrates. Hemi-acetal structure – Here the 1st carbon of the glucose condenses with the -OH group of the 5th carbon to form a ring structure. Haworth structure – It is the presence of the pyranose ring structure Classification of Carbohydrates Monosaccharides The simple carbohydrates include single sugars (monosaccharides) and polymers, oligosaccharides, and polysaccharides. Simplest group of carbohydrates and often called simple sugars since they cannot be further hydrolyzed. Colorless, crystalline solid which are soluble in water and insoluble in a non-polar solvent. -
Acetone Thermally Treated in Different Solvents Joji Okumura, Tetsuya Yanai, Izumi Yajima and Kazuo Hayashi Kawasaki Research Center, T
Agric. Biol. Chem., 54 (7), 1631-1638, 1990 1631 Volatile Products Formed from L-Cysteine and Dihydroxy- acetone Thermally Treated in Different Solvents Joji Okumura, Tetsuya Yanai, Izumi Yajima and Kazuo Hayashi Kawasaki Research Center, T. Hasegawa Co., Ltd., 335 Kariyado, Nakahara-ku, Kawasaki 211, Japan Received November 21, 1989 Equimolecular amounts of L-cysteine and dihydroxyacetone were heated at 110°C for 3hr in different solvent systems such as deionized water, glycerine, or triglyceride. The resulting mixtures were vacuum steam-distilled and each distillate was extracted with ethyl ether. The volatiles in the ether extracts were analyzed by gas chromatographyand gas chromatograph\-massspectrometry. Differences in the quality and quantity of volatiles formed in the systems were observed. Pyrazines, thiazoles, thiophenes, and someother sulfur-containing compounds wereidentified in the volatiles. Dimethylpyrazines were formed as major volatiles in the glycerine and triglyceride systems but were minor in the water system. 2-Acetylthiazole in the triglyceride system and 2-acetylthiophene in the glycerine system were secondary abundant products. In the water system, l-mercapto-2-propanone was found as a major volatile compound, and thiophenes as the next dominants. The Maillard reaction is significant in the sugar alcohols, oils and fats, or their mixtures formation of flavors from various heated were used for various applications. It has been foods. In the flavor industry, the Maillard observed in some cases that the quality of reaction